Wall clock time and date at job start Mon Mar 30 2020 04:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47477 * 2 1 4 4 C 1.46893 * 111.00483 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47374 * 180.02562 * 4 3 2 6 6 C 1.38116 * 120.03281 * 259.72425 * 5 4 3 7 7 C 1.38289 * 120.06796 * 179.74263 * 6 5 4 8 8 N 1.48021 * 119.92473 * 180.26018 * 7 6 5 9 9 O 1.31706 * 119.99572 * 180.25470 * 8 7 6 10 10 O 1.31697 * 120.00150 * 0.24567 * 8 7 6 11 11 C 1.38330 * 120.14446 * 0.51079 * 7 6 5 12 12 C 1.38067 * 120.07212 * 359.76359 * 11 7 6 13 13 C 1.38887 * 120.04096 * 79.99733 * 5 4 3 14 14 O 1.35723 * 120.07037 * 0.02630 * 13 5 4 15 15 C 1.22310 * 117.00358 * 174.24903 * 14 13 5 16 16 H 1.08005 * 119.99568 * 5.10574 * 15 14 13 17 17 C 1.46627 * 120.00414 * 185.09755 * 15 14 13 18 18 N 1.29373 * 119.99814 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00148 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47209 * 90.00227 * 19 17 15 21 21 H 1.48507 * 109.47124 * 210.00039 * 19 17 15 22 22 H 1.48502 * 109.47284 * 329.99858 * 19 17 15 23 23 H 1.08999 * 109.47210 * 300.00352 * 1 2 3 24 24 H 1.09001 * 109.47169 * 60.00481 * 1 2 3 25 25 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47706 * 239.99650 * 2 1 3 27 27 H 1.09001 * 109.47169 * 119.99519 * 2 1 3 28 28 H 1.00904 * 110.99973 * 303.95287 * 3 2 1 29 29 H 1.09008 * 109.46969 * 299.99632 * 4 3 2 30 30 H 1.09001 * 109.47265 * 59.99813 * 4 3 2 31 31 H 1.08000 * 119.96418 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.96465 * 179.74684 * 11 7 6 33 33 H 1.07997 * 120.03345 * 179.97438 * 12 11 7 34 34 H 0.97001 * 119.99605 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 6 3.9524 2.8579 0.0012 6 6 4.3687 3.4501 -1.1750 7 6 4.7899 4.7673 -1.1762 8 7 5.2300 5.4007 -2.4396 9 8 5.6361 6.6536 -2.4415 10 8 5.2156 4.7114 -3.5617 11 6 4.8057 5.4927 0.0015 12 6 4.3960 4.9048 1.1817 13 6 3.9674 3.5833 1.1855 14 8 3.5646 3.0024 2.3441 15 6 3.7020 3.6547 3.3695 16 1 4.0503 4.6757 3.3173 17 6 3.3938 3.0507 4.6696 18 7 2.9770 1.8276 4.7321 19 14 3.6030 4.0473 6.2356 20 1 2.3353 4.7568 6.5439 21 1 3.9473 3.1384 7.3585 22 1 4.6926 5.0389 6.0495 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6442 1.9013 -0.7814 29 1 3.8646 0.9204 0.8909 30 1 3.8654 0.9201 -0.8891 31 1 4.3618 2.8851 -2.0953 32 1 5.1390 6.5200 -0.0020 33 1 4.4090 5.4716 2.1009 34 1 2.7728 1.4282 5.5921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037710171.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:35 Heat of formation + Delta-G solvation = 35.247131 kcal Electronic energy + Delta-G solvation = -19825.360113 eV Core-core repulsion = 16536.237337 eV Total energy + Delta-G solvation = -3289.122776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.16999 -38.41075 -36.90949 -35.78713 -33.83732 -33.01934 -31.92521 -29.97365 -29.01869 -26.62971 -24.80340 -24.52863 -21.88032 -21.75845 -20.65253 -19.17367 -17.97685 -17.02194 -16.67343 -15.65964 -15.44979 -15.31824 -15.00957 -14.59144 -14.53667 -14.20368 -13.70579 -13.60191 -12.86516 -12.59114 -12.41226 -12.10476 -11.81151 -11.62331 -11.34380 -11.20551 -11.14852 -11.00280 -10.87972 -10.01843 -9.92481 -9.88489 -9.76410 -9.54230 -8.49709 -8.03827 -7.96186 -7.86742 -4.38743 0.39281 2.04769 2.12593 2.48480 2.58370 2.63643 2.66888 3.13906 3.74153 4.24365 4.33993 4.73729 5.22204 5.32368 5.37949 5.44312 5.63764 5.71865 5.78131 5.82165 5.93505 6.01790 6.13655 6.19778 6.21211 6.33501 6.52990 6.58988 6.74818 6.88813 7.00745 7.15119 7.35689 7.40274 7.66089 7.75210 8.24125 8.83626 9.25656 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.006859 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.057146 B = 4081.458954 C = 5965.575322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 N -0.679 5.679 4 C 0.121 3.879 5 C -0.137 4.137 6 C -0.021 4.021 7 C -0.124 4.124 8 N 0.042 4.958 9 O -0.307 6.307 10 O -0.307 6.307 11 C -0.005 4.005 12 C -0.230 4.230 13 C 0.066 3.934 14 O -0.027 6.027 15 C -0.321 4.321 16 H 0.115 0.885 17 C 0.042 3.958 18 N -0.735 5.735 19 Si 0.959 3.041 20 H -0.256 1.256 21 H -0.263 1.263 22 H -0.249 1.249 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.022 0.978 27 H 0.072 0.928 28 H 0.337 0.663 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 -4.255 5.387 7.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 N -0.310 5.310 4 C -0.008 4.008 5 C -0.141 4.141 6 C -0.042 4.042 7 C -0.225 4.225 8 N 0.467 4.533 9 O -0.464 6.464 10 O -0.465 6.465 11 C -0.025 4.025 12 C -0.251 4.251 13 C 0.003 3.997 14 O 0.090 5.910 15 C -0.401 4.401 16 H 0.132 0.868 17 C -0.184 4.184 18 N -0.357 5.357 19 Si 0.778 3.222 20 H -0.180 1.180 21 H -0.187 1.187 22 H -0.172 1.172 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.888 -4.833 6.535 9.010 hybrid contribution 0.359 0.422 -0.619 0.831 sum -3.529 -4.411 5.915 8.179 Atomic orbital electron populations 1.21745 0.95375 1.01137 1.02326 1.21880 0.95390 0.89962 1.00098 1.60454 1.07844 1.12837 1.49893 1.20510 0.87300 0.92419 1.00538 1.18301 1.09631 0.95977 0.90175 1.20087 0.95072 0.91836 0.97180 1.19368 1.25121 0.95625 0.82339 1.49924 0.98157 1.01684 1.03537 1.96111 1.57755 0.97204 1.95374 1.96107 1.67792 1.63348 1.19245 1.20317 0.93624 0.98915 0.89676 1.20466 1.11337 0.95456 0.97827 1.18790 1.02800 0.92712 0.85398 1.80267 1.54248 1.43316 1.13213 1.22057 1.36043 0.98612 0.83439 0.86847 1.27611 0.94729 0.96198 0.99816 1.68909 1.23251 1.12680 1.30872 0.85369 0.80987 0.79490 0.76337 1.18027 1.18708 1.17177 0.91743 0.93126 0.92652 0.96016 0.90978 0.84558 0.90046 0.95207 0.85298 0.85336 0.84789 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.17 37.15 0.38 -1.42 16 2 C 0.06 0.78 6.40 -3.83 -0.02 0.75 16 3 N -0.68 -11.14 6.49 -115.06 -0.75 -11.88 16 4 C 0.12 2.08 5.48 -4.98 -0.03 2.06 16 5 C -0.14 -2.67 5.41 -104.43 -0.56 -3.24 16 6 C -0.02 -0.42 9.19 -39.61 -0.36 -0.78 16 7 C -0.12 -2.75 6.89 -79.89 -0.55 -3.30 16 8 N 0.04 1.05 4.98 33.99 0.17 1.22 16 9 O -0.31 -7.86 19.15 -31.57 -0.60 -8.46 16 10 O -0.31 -7.85 19.15 -31.56 -0.60 -8.46 16 11 C 0.00 -0.10 9.57 -39.61 -0.38 -0.48 16 12 C -0.23 -4.50 9.12 -39.39 -0.36 -4.86 16 13 C 0.07 1.37 6.56 -39.09 -0.26 1.11 16 14 O -0.03 -0.59 8.52 20.99 0.18 -0.41 16 15 C -0.32 -6.51 9.48 34.12 0.32 -6.19 16 16 H 0.11 2.11 5.03 -52.48 -0.26 1.84 16 17 C 0.04 0.79 5.69 -15.20 -0.09 0.71 16 18 N -0.74 -14.72 13.66 55.99 0.76 -13.96 16 19 Si 0.96 13.76 29.64 -169.99 -5.04 8.73 16 20 H -0.26 -3.65 7.11 56.52 0.40 -3.25 16 21 H -0.26 -3.65 7.11 56.52 0.40 -3.25 16 22 H -0.25 -3.52 7.11 56.52 0.40 -3.12 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.34 5.28 8.72 -39.29 -0.34 4.94 16 29 H 0.08 1.50 7.86 -51.92 -0.41 1.09 16 30 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 31 H 0.13 2.48 7.55 -52.49 -0.40 2.09 16 32 H 0.13 2.46 7.57 -52.49 -0.40 2.06 16 33 H 0.13 2.36 5.69 -52.49 -0.30 2.06 16 34 H 0.31 5.30 8.26 -40.82 -0.34 4.97 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -26.61 306.27 -6.95 -33.56 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -3.77 Total: 10.70 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.91 Total: -15.64 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.19 Total: -24.62 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -1.03 Total: -17.33 kcal Atomic # 14 Polarization: 13.76 SS G_CDS: -5.04 Total: 8.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.61 -6.95 -33.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037710171.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.804 kcal (2) G-P(sol) polarization free energy of solvation -26.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds