Wall clock time and date at job start Mon Mar 30 2020 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47477 * 2 1 4 4 C 1.46893 * 111.00483 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47374 * 180.02562 * 4 3 2 6 6 C 1.38116 * 120.03281 * 259.72425 * 5 4 3 7 7 C 1.38289 * 120.06796 * 179.74263 * 6 5 4 8 8 N 1.48021 * 119.92473 * 180.26018 * 7 6 5 9 9 O 1.31706 * 119.99572 * 180.25470 * 8 7 6 10 10 O 1.31697 * 120.00150 * 0.24567 * 8 7 6 11 11 C 1.38330 * 120.14446 * 0.51079 * 7 6 5 12 12 C 1.38067 * 120.07212 * 359.76359 * 11 7 6 13 13 C 1.38887 * 120.04096 * 79.99733 * 5 4 3 14 14 O 1.35723 * 120.07037 * 0.02630 * 13 5 4 15 15 C 1.22310 * 117.00358 * 174.24903 * 14 13 5 16 16 H 1.08005 * 119.99568 * 5.10574 * 15 14 13 17 17 C 1.46627 * 120.00414 * 185.09755 * 15 14 13 18 18 N 1.29373 * 119.99814 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00148 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47209 * 90.00227 * 19 17 15 21 21 H 1.48507 * 109.47124 * 210.00039 * 19 17 15 22 22 H 1.48502 * 109.47284 * 329.99858 * 19 17 15 23 23 H 1.08999 * 109.47210 * 300.00352 * 1 2 3 24 24 H 1.09001 * 109.47169 * 60.00481 * 1 2 3 25 25 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47706 * 239.99650 * 2 1 3 27 27 H 1.09001 * 109.47169 * 119.99519 * 2 1 3 28 28 H 1.00904 * 110.99973 * 303.95287 * 3 2 1 29 29 H 1.09008 * 109.46969 * 299.99632 * 4 3 2 30 30 H 1.09001 * 109.47265 * 59.99813 * 4 3 2 31 31 H 1.08000 * 119.96418 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.96465 * 179.74684 * 11 7 6 33 33 H 1.07997 * 120.03345 * 179.97438 * 12 11 7 34 34 H 0.97001 * 119.99605 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 6 3.9524 2.8579 0.0012 6 6 4.3687 3.4501 -1.1750 7 6 4.7899 4.7673 -1.1762 8 7 5.2300 5.4007 -2.4396 9 8 5.6361 6.6536 -2.4415 10 8 5.2156 4.7114 -3.5617 11 6 4.8057 5.4927 0.0015 12 6 4.3960 4.9048 1.1817 13 6 3.9674 3.5833 1.1855 14 8 3.5646 3.0024 2.3441 15 6 3.7020 3.6547 3.3695 16 1 4.0503 4.6757 3.3173 17 6 3.3938 3.0507 4.6696 18 7 2.9770 1.8276 4.7321 19 14 3.6030 4.0473 6.2356 20 1 2.3353 4.7568 6.5439 21 1 3.9473 3.1384 7.3585 22 1 4.6926 5.0389 6.0495 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6442 1.9013 -0.7814 29 1 3.8646 0.9204 0.8909 30 1 3.8654 0.9201 -0.8891 31 1 4.3618 2.8851 -2.0953 32 1 5.1390 6.5200 -0.0020 33 1 4.4090 5.4716 2.1009 34 1 2.7728 1.4282 5.5921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037710171.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:33 Heat of formation + Delta-G solvation = 17.588772 kcal Electronic energy + Delta-G solvation = -19826.125837 eV Core-core repulsion = 16536.237337 eV Total energy + Delta-G solvation = -3289.888500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -43.77454 -39.72771 -37.84420 -36.93059 -36.20845 -33.75587 -33.17221 -31.40737 -30.29989 -28.74375 -26.23497 -25.88067 -23.61000 -22.91215 -22.14028 -21.06380 -19.84507 -18.14366 -17.93531 -17.69735 -17.27314 -16.94529 -16.57396 -15.94446 -15.69762 -15.42266 -15.07988 -14.92761 -14.35740 -13.94861 -13.81355 -13.44754 -13.21919 -13.08912 -12.81519 -12.54608 -12.43084 -12.12879 -11.99494 -11.58661 -11.57562 -10.85010 -10.79521 -10.67277 -10.09847 -9.94218 -9.59420 -9.36199 -6.14549 -1.39017 0.61243 0.71400 0.97189 1.36853 1.58117 1.83543 2.00208 2.02025 2.12177 2.79528 3.31988 3.41876 3.83234 3.97658 4.03876 4.26397 4.28995 4.45586 4.47940 4.60102 4.68564 4.71353 4.76542 4.93458 4.98340 5.12848 5.17134 5.31581 5.37785 5.42577 5.76603 5.91234 6.06006 6.39101 6.46406 6.70581 6.90304 7.53835 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.006859 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.057146 B = 4081.458954 C = 5965.575322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 N -0.686 5.686 4 C 0.116 3.884 5 C -0.030 4.030 6 C -0.131 4.131 7 C -0.036 4.036 8 N -0.003 5.003 9 O -0.558 6.558 10 O -0.563 6.563 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.124 4.124 14 O 0.007 5.993 15 C -0.027 4.027 16 H 0.186 0.814 17 C -0.013 4.013 18 N -0.641 5.641 19 Si 1.038 2.962 20 H -0.239 1.239 21 H -0.242 1.242 22 H -0.226 1.226 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.338 0.662 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.177 0.823 34 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 -10.632 26.419 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 N -0.318 5.318 4 C -0.013 4.013 5 C -0.035 4.035 6 C -0.152 4.152 7 C -0.162 4.162 8 N 0.324 4.676 9 O -0.648 6.648 10 O -0.653 6.653 11 C -0.130 4.130 12 C -0.144 4.144 13 C -0.179 4.179 14 O 0.138 5.862 15 C -0.126 4.126 16 H 0.202 0.798 17 C -0.248 4.248 18 N -0.264 5.264 19 Si 0.847 3.153 20 H -0.162 1.162 21 H -0.165 1.165 22 H -0.148 1.148 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.156 0.844 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.194 0.806 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.190 -10.933 26.517 30.118 hybrid contribution 0.519 0.275 -1.878 1.968 sum -8.671 -10.657 24.639 28.210 Atomic orbital electron populations 1.21708 0.93853 1.02469 1.02000 1.21988 0.96569 0.88408 1.00564 1.60543 1.06525 1.14578 1.50148 1.20613 0.88551 0.90976 1.01125 1.18447 1.00454 0.95686 0.88937 1.19712 1.05577 0.92629 0.97314 1.19952 1.17421 0.95747 0.83066 1.48856 1.14325 1.01592 1.02788 1.95767 1.71968 1.01127 1.95980 1.95773 1.81886 1.65212 1.22435 1.20052 1.03258 0.99345 0.90381 1.20557 1.02677 0.93483 0.97701 1.18074 1.21766 0.94859 0.83204 1.80412 1.46146 1.44556 1.15082 1.25888 1.03060 0.99801 0.83825 0.79787 1.29846 0.95125 0.98278 1.01554 1.68809 1.08070 1.12612 1.36929 0.84284 0.82732 0.78421 0.69838 1.16236 1.16474 1.14772 0.92395 0.93130 0.90529 0.95363 0.90638 0.84438 0.89258 0.94804 0.88216 0.86932 0.80611 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 92. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 10.17 71.98 0.73 -2.04 16 2 C 0.05 1.23 6.40 86.30 0.55 1.79 16 3 N -0.69 -19.96 6.49 -517.95 -3.36 -23.32 16 4 C 0.12 3.73 5.48 85.56 0.47 4.19 16 5 C -0.03 -1.17 5.41 -19.74 -0.11 -1.28 16 6 C -0.13 -6.65 9.19 22.25 0.20 -6.44 16 7 C -0.04 -2.12 6.89 36.41 0.25 -1.87 16 8 N 0.00 -0.22 4.98 -46.38 -0.23 -0.46 16 9 O -0.56 -43.37 19.15 3.50 0.07 -43.31 16 10 O -0.56 -44.32 19.15 3.52 0.07 -44.25 16 11 C -0.11 -5.29 9.57 22.25 0.21 -5.08 16 12 C -0.12 -4.21 9.12 22.39 0.20 -4.00 16 13 C -0.12 -4.24 6.56 22.59 0.15 -4.09 16 14 O 0.01 0.19 8.52 52.19 0.44 0.64 16 15 C -0.03 -0.51 9.48 70.01 0.66 0.15 16 16 H 0.19 2.37 5.03 -2.91 -0.01 2.35 16 17 C -0.01 -0.19 5.69 87.25 0.50 0.31 16 18 N -0.64 -11.20 13.66 23.22 0.32 -10.88 16 19 Si 1.04 6.94 29.64 68.60 2.03 8.97 16 20 H -0.24 -1.75 7.11 99.48 0.71 -1.04 16 21 H -0.24 -1.56 7.11 99.48 0.71 -0.85 16 22 H -0.23 -1.44 7.11 99.48 0.71 -0.73 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.34 10.42 8.72 -89.69 -0.78 9.64 16 29 H 0.09 2.64 7.86 -2.38 -0.02 2.63 16 30 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 31 H 0.10 5.41 7.55 -2.91 -0.02 5.39 16 32 H 0.11 5.58 7.57 -2.91 -0.02 5.56 16 33 H 0.18 3.89 5.69 -2.91 -0.02 3.88 16 34 H 0.36 4.16 8.26 -92.71 -0.77 3.39 16 Total: -1.00 -97.62 306.27 3.53 -94.09 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.36 Total: 36.88 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 3.83 Total: -18.36 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: -3.28 Total: -34.66 kcal Atomic # 8 Polarization: -87.50 SS G_CDS: 0.58 Total: -86.92 kcal Atomic # 14 Polarization: 6.94 SS G_CDS: 2.03 Total: 8.97 kcal Total: -97.62 3.53 -94.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037710171.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.681 kcal (2) G-P(sol) polarization free energy of solvation -97.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds