Wall clock time and date at job start Mon Mar 30 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47346 * 2 1 4 4 C 1.46495 * 120.00149 * 264.50825 * 3 2 1 5 5 C 1.50704 * 109.46657 * 269.99723 * 4 3 2 6 6 H 1.07990 * 120.00339 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99670 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00222 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00532 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.46932 * 89.99668 * 9 7 5 11 11 H 1.48496 * 109.47345 * 210.00125 * 9 7 5 12 12 H 1.48510 * 109.46678 * 329.99973 * 9 7 5 13 13 C 1.34774 * 119.99556 * 84.49954 * 3 2 1 14 14 O 1.21607 * 119.99621 * 185.91657 * 13 3 2 15 15 C 1.47433 * 120.00378 * 5.92362 * 13 3 2 16 16 C 1.39763 * 120.19508 * 54.35296 * 15 13 3 17 17 C 1.37932 * 119.89965 * 179.97438 * 16 15 13 18 18 F 1.35105 * 119.84939 * 180.02562 * 17 16 15 19 19 C 1.38783 * 120.29906 * 359.72518 * 17 16 15 20 20 C 1.37961 * 120.39981 * 0.55391 * 19 17 16 21 21 C 1.38925 * 120.09130 * 359.44831 * 20 19 17 22 22 N 1.39002 * 120.15211 * 180.25351 * 21 20 19 23 23 H 1.08994 * 109.47204 * 300.00396 * 1 2 3 24 24 H 1.09000 * 109.47269 * 59.99955 * 1 2 3 25 25 H 1.08996 * 109.47417 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47115 * 240.00151 * 2 1 3 27 27 H 1.09000 * 109.47269 * 120.00045 * 2 1 3 28 28 H 1.09003 * 109.47033 * 29.99345 * 4 3 2 29 29 H 1.08996 * 109.47310 * 149.99814 * 4 3 2 30 30 H 0.97003 * 120.00628 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.04903 * 359.95641 * 16 15 13 32 32 H 1.08000 * 119.79797 * 180.27950 * 19 17 16 33 33 H 1.08002 * 119.95542 * 179.72307 * 20 19 17 34 34 H 0.96996 * 119.99595 * 355.05786 * 22 21 20 35 35 H 0.96997 * 120.00383 * 175.05895 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3771 2.0314 -1.2628 5 6 3.8335 1.7828 -1.5598 6 1 4.4319 1.1987 -0.8765 7 6 4.4017 2.3003 -2.7044 8 7 5.6728 2.0839 -2.9634 9 14 3.3662 3.3090 -3.8876 10 1 3.4322 4.7423 -3.5049 11 1 3.8867 3.1407 -5.2682 12 1 1.9564 2.8456 -3.8302 13 6 2.1375 2.0538 1.1619 14 8 2.4392 3.2318 1.1543 15 6 1.9023 1.3613 2.4420 16 6 2.6036 0.1916 2.7477 17 6 2.3791 -0.4510 3.9474 18 9 3.0580 -1.5813 4.2421 19 6 1.4637 0.0617 4.8558 20 6 0.7605 1.2123 4.5643 21 6 0.9736 1.8729 3.3608 22 7 0.2696 3.0351 3.0681 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7671 1.6222 -2.0682 29 1 2.2006 3.1039 -1.1823 30 1 6.0726 2.4477 -3.7689 31 1 3.3199 -0.2086 2.0455 32 1 1.2976 -0.4456 5.7946 33 1 0.0465 1.6025 5.2745 34 1 -0.4230 3.3475 3.6712 35 1 0.4708 3.5338 2.2609 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:20 Heat of formation + Delta-G solvation = -51.765975 kcal Electronic energy + Delta-G solvation = -20382.197627 eV Core-core repulsion = 17101.674469 eV Total energy + Delta-G solvation = -3280.523158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.22 seconds Orbital eigenvalues (eV) -48.61016 -40.13134 -37.99819 -35.56054 -34.21626 -32.79803 -31.31326 -30.32455 -28.41878 -27.51532 -24.24703 -23.04090 -22.50724 -21.65283 -19.06235 -17.43309 -17.11256 -17.09570 -16.88877 -16.04125 -15.54645 -15.29453 -15.00453 -14.42767 -14.04817 -13.90297 -13.43904 -13.25514 -12.90879 -12.82565 -12.73239 -12.37689 -12.17688 -11.86047 -11.50272 -11.29749 -11.00191 -10.76268 -10.55198 -10.32292 -10.18635 -9.58108 -9.25700 -8.94413 -8.61280 -7.78579 -7.46410 -6.10941 -4.10428 1.04547 1.40952 3.14783 3.27043 3.33001 3.34456 3.66867 3.79850 3.85985 4.37072 4.46481 4.71596 4.86444 5.04496 5.22557 5.29917 5.34725 5.57372 5.62524 5.74786 5.83637 5.99550 6.08243 6.14055 6.18132 6.20319 6.41333 6.67180 6.80141 6.90143 7.27040 7.40850 7.57269 7.71861 8.17381 8.43082 8.82564 8.93134 9.48690 11.02280 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.005861 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.897248 B = 4775.815218 C = 5128.660942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 N -0.582 5.582 4 C 0.215 3.785 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.561 3.439 14 O -0.541 6.541 15 C -0.170 4.170 16 C -0.071 4.071 17 C 0.028 3.972 18 F -0.146 7.146 19 C -0.089 4.089 20 C -0.181 4.181 21 C 0.251 3.749 22 N -0.862 5.862 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.398 0.602 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.594 -4.350 12.750 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.312 5.312 4 C 0.095 3.905 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.348 3.652 14 O -0.419 6.419 15 C -0.179 4.179 16 C -0.090 4.090 17 C 0.007 3.993 18 F -0.125 7.125 19 C -0.109 4.109 20 C -0.204 4.204 21 C 0.142 3.858 22 N -0.400 5.400 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.226 0.774 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.246 -3.736 12.550 18.626 hybrid contribution -0.344 0.542 -0.723 0.967 sum -13.590 -3.194 11.827 18.297 Atomic orbital electron populations 1.22180 0.96649 1.01632 1.01965 1.21663 0.93582 0.83756 1.03594 1.47890 1.62526 1.13416 1.07364 1.19710 0.96736 0.94052 0.80051 1.21325 0.93321 1.34596 1.07774 0.90680 1.24851 0.94844 0.95644 0.97584 1.69894 1.11450 1.45424 1.26623 0.86852 0.80902 0.81404 0.80540 1.19898 1.21031 1.19067 1.17883 0.77677 0.86407 0.83261 1.90754 1.48346 1.15659 1.87163 1.19365 1.03131 0.98443 0.96912 1.21061 0.98864 0.93373 0.95751 1.17203 0.98707 0.87173 0.96215 1.91471 1.78820 1.48563 1.93600 1.20900 0.95119 0.96028 0.98862 1.20330 1.05308 0.98182 0.96558 1.17620 0.89779 0.86598 0.91773 1.42528 1.41603 1.26194 1.29711 0.92997 0.92454 0.91946 0.89564 0.90691 0.95072 0.94407 0.92506 0.83936 0.84820 0.84985 0.77397 0.75862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.20 37.16 0.38 -1.83 16 2 C 0.10 1.59 5.89 -4.04 -0.02 1.56 16 3 N -0.58 -11.91 2.47 -176.32 -0.44 -12.35 16 4 C 0.21 5.18 4.25 -5.19 -0.02 5.16 16 5 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 6 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 9 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.56 11.48 6.44 -12.52 -0.08 11.40 16 14 O -0.54 -12.91 15.35 5.27 0.08 -12.83 16 15 C -0.17 -2.81 4.87 -104.81 -0.51 -3.32 16 16 C -0.07 -1.09 7.57 -39.12 -0.30 -1.39 16 17 C 0.03 0.39 7.28 -39.49 -0.29 0.10 16 18 F -0.15 -2.07 17.26 2.25 0.04 -2.03 16 19 C -0.09 -1.01 10.00 -39.48 -0.39 -1.40 16 20 C -0.18 -1.98 9.88 -39.43 -0.39 -2.37 16 21 C 0.25 3.42 6.75 -83.58 -0.56 2.86 16 22 N -0.86 -10.29 8.96 32.56 0.29 -10.00 16 23 H 0.05 0.69 8.03 -51.93 -0.42 0.27 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 27 H 0.07 1.12 4.49 -51.93 -0.23 0.89 16 28 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 29 H 0.04 0.97 6.78 -51.93 -0.35 0.61 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.14 2.28 7.33 -52.49 -0.38 1.90 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.40 3.29 8.84 -40.82 -0.36 2.93 16 35 H 0.41 5.78 6.82 -40.82 -0.28 5.50 16 LS Contribution 300.97 15.07 4.54 4.54 Total: -1.00 -33.13 300.97 -6.11 -39.24 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.09 Total: 6.16 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.63 Total: -2.69 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.63 Total: -49.08 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.13 -6.11 -39.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.524 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.22 seconds