Wall clock time and date at job start Mon Mar 30 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47346 * 2 1 4 4 C 1.46495 * 120.00149 * 264.50825 * 3 2 1 5 5 C 1.50704 * 109.46657 * 269.99723 * 4 3 2 6 6 H 1.07990 * 120.00339 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99670 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00222 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00532 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.46932 * 89.99668 * 9 7 5 11 11 H 1.48496 * 109.47345 * 210.00125 * 9 7 5 12 12 H 1.48510 * 109.46678 * 329.99973 * 9 7 5 13 13 C 1.34774 * 119.99556 * 84.49954 * 3 2 1 14 14 O 1.21607 * 119.99621 * 185.91657 * 13 3 2 15 15 C 1.47433 * 120.00378 * 5.92362 * 13 3 2 16 16 C 1.39763 * 120.19508 * 54.35296 * 15 13 3 17 17 C 1.37932 * 119.89965 * 179.97438 * 16 15 13 18 18 F 1.35105 * 119.84939 * 180.02562 * 17 16 15 19 19 C 1.38783 * 120.29906 * 359.72518 * 17 16 15 20 20 C 1.37961 * 120.39981 * 0.55391 * 19 17 16 21 21 C 1.38925 * 120.09130 * 359.44831 * 20 19 17 22 22 N 1.39002 * 120.15211 * 180.25351 * 21 20 19 23 23 H 1.08994 * 109.47204 * 300.00396 * 1 2 3 24 24 H 1.09000 * 109.47269 * 59.99955 * 1 2 3 25 25 H 1.08996 * 109.47417 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47115 * 240.00151 * 2 1 3 27 27 H 1.09000 * 109.47269 * 120.00045 * 2 1 3 28 28 H 1.09003 * 109.47033 * 29.99345 * 4 3 2 29 29 H 1.08996 * 109.47310 * 149.99814 * 4 3 2 30 30 H 0.97003 * 120.00628 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.04903 * 359.95641 * 16 15 13 32 32 H 1.08000 * 119.79797 * 180.27950 * 19 17 16 33 33 H 1.08002 * 119.95542 * 179.72307 * 20 19 17 34 34 H 0.96996 * 119.99595 * 355.05786 * 22 21 20 35 35 H 0.96997 * 120.00383 * 175.05895 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3771 2.0314 -1.2628 5 6 3.8335 1.7828 -1.5598 6 1 4.4319 1.1987 -0.8765 7 6 4.4017 2.3003 -2.7044 8 7 5.6728 2.0839 -2.9634 9 14 3.3662 3.3090 -3.8876 10 1 3.4322 4.7423 -3.5049 11 1 3.8867 3.1407 -5.2682 12 1 1.9564 2.8456 -3.8302 13 6 2.1375 2.0538 1.1619 14 8 2.4392 3.2318 1.1543 15 6 1.9023 1.3613 2.4420 16 6 2.6036 0.1916 2.7477 17 6 2.3791 -0.4510 3.9474 18 9 3.0580 -1.5813 4.2421 19 6 1.4637 0.0617 4.8558 20 6 0.7605 1.2123 4.5643 21 6 0.9736 1.8729 3.3608 22 7 0.2696 3.0351 3.0681 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7671 1.6222 -2.0682 29 1 2.2006 3.1039 -1.1823 30 1 6.0726 2.4477 -3.7689 31 1 3.3199 -0.2086 2.0455 32 1 1.2976 -0.4456 5.7946 33 1 0.0465 1.6025 5.2745 34 1 -0.4230 3.3475 3.6712 35 1 0.4708 3.5338 2.2609 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:14 Heat of formation + Delta-G solvation = -74.949122 kcal Electronic energy + Delta-G solvation = -20383.202924 eV Core-core repulsion = 17101.674469 eV Total energy + Delta-G solvation = -3281.528455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.69225 -41.47017 -39.30110 -37.13047 -35.28763 -34.87736 -32.61467 -31.74789 -29.76141 -29.03279 -25.62924 -24.58921 -23.73281 -23.00042 -20.48333 -19.14543 -18.55926 -18.31868 -18.11547 -17.51122 -16.98770 -16.46148 -16.27015 -16.01405 -15.50126 -15.12761 -14.89951 -14.57956 -14.45804 -14.05294 -13.85946 -13.78351 -13.66354 -13.30083 -13.21450 -12.70004 -12.45461 -12.31847 -12.05742 -12.01361 -11.76485 -11.37065 -10.85457 -10.80957 -10.08197 -9.45776 -8.49374 -8.35779 -6.42014 -0.03136 0.36474 1.31827 1.35756 1.44526 1.69682 2.23378 2.29635 2.63741 2.87848 2.98207 3.37762 3.59856 3.77985 4.03308 4.13349 4.29892 4.37360 4.52127 4.62212 4.75106 4.83217 4.88993 4.91889 4.97156 5.08315 5.13467 5.21768 5.30366 5.43166 5.58959 5.79252 6.20313 6.36182 6.58101 6.59958 6.87990 7.15590 7.30172 8.81185 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.005861 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.897248 B = 4775.815218 C = 5128.660942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 N -0.589 5.589 4 C 0.224 3.776 5 C -0.541 4.541 6 H 0.026 0.974 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.557 3.443 14 O -0.587 6.587 15 C -0.199 4.199 16 C -0.084 4.084 17 C 0.019 3.981 18 F -0.151 7.151 19 C -0.070 4.070 20 C -0.162 4.162 21 C 0.252 3.748 22 N -0.854 5.854 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.269 0.731 31 H 0.120 0.880 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.417 0.583 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.860 -4.530 14.344 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 N -0.318 5.318 4 C 0.102 3.898 5 C -0.579 4.579 6 H 0.045 0.955 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.772 3.228 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.346 3.654 14 O -0.469 6.469 15 C -0.208 4.208 16 C -0.104 4.104 17 C -0.002 4.002 18 F -0.130 7.130 19 C -0.089 4.089 20 C -0.184 4.184 21 C 0.141 3.859 22 N -0.392 5.392 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.190 0.810 33 H 0.194 0.806 34 H 0.248 0.752 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -16.561 -3.957 14.182 22.160 hybrid contribution 0.731 0.538 -1.078 1.410 sum -15.830 -3.418 13.104 20.832 Atomic orbital electron populations 1.22076 0.93690 1.03513 1.01878 1.21904 0.95926 0.81527 1.03690 1.47965 1.62564 1.14902 1.06408 1.19375 0.94060 0.93813 0.82510 1.21557 0.95423 1.33895 1.07056 0.95521 1.25871 0.96177 0.96870 0.99723 1.70054 1.13691 1.47029 1.27686 0.85688 0.80364 0.79000 0.77746 1.19927 1.19989 1.16026 1.18531 0.76323 0.86017 0.84493 1.90702 1.50405 1.17790 1.88010 1.19019 1.06229 0.99600 0.95948 1.20871 0.99063 0.93781 0.96665 1.17331 0.99570 0.87148 0.96183 1.91458 1.79155 1.48844 1.93539 1.21323 0.92880 0.95509 0.99223 1.20781 1.04919 0.97089 0.95614 1.17842 0.89054 0.86951 0.92043 1.42532 1.41649 1.25428 1.29581 0.92702 0.92833 0.89007 0.90506 0.89654 0.93161 0.95686 0.92195 0.86184 0.81026 0.80609 0.75162 0.77089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 10.20 71.98 0.73 -3.09 16 2 C 0.09 3.01 5.89 86.38 0.51 3.51 16 3 N -0.59 -24.85 2.47 -830.02 -2.05 -26.90 16 4 C 0.22 11.06 4.25 85.64 0.36 11.43 16 5 C -0.54 -32.32 9.94 25.60 0.25 -32.06 16 6 H 0.03 1.79 8.06 -2.92 -0.02 1.76 16 7 C 0.01 0.70 5.47 84.65 0.46 1.16 16 8 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 9 Si 0.95 44.48 27.47 68.60 1.88 46.37 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 13 C 0.56 23.57 6.44 86.67 0.56 24.13 16 14 O -0.59 -29.23 15.35 -4.05 -0.06 -29.29 16 15 C -0.20 -6.58 4.87 -19.98 -0.10 -6.67 16 16 C -0.08 -2.63 7.57 22.57 0.17 -2.46 16 17 C 0.02 0.48 7.28 22.33 0.16 0.65 16 18 F -0.15 -4.11 17.26 44.97 0.78 -3.33 16 19 C -0.07 -1.28 10.00 22.33 0.22 -1.05 16 20 C -0.16 -2.79 9.88 22.37 0.22 -2.57 16 21 C 0.25 6.28 6.75 38.67 0.26 6.54 16 22 N -0.85 -18.59 8.96 -50.91 -0.46 -19.04 16 23 H 0.05 1.34 8.03 -2.39 -0.02 1.32 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 2.61 8.03 -2.38 -0.02 2.59 16 27 H 0.09 2.62 4.49 -2.39 -0.01 2.60 16 28 H 0.05 2.28 7.13 -2.39 -0.02 2.26 16 29 H 0.03 1.30 6.78 -2.39 -0.02 1.28 16 30 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 31 H 0.12 4.16 7.33 -2.91 -0.02 4.14 16 32 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.42 5.53 8.84 -92.71 -0.82 4.71 16 35 H 0.40 10.99 6.82 -92.71 -0.63 10.36 16 Total: -1.00 -76.89 300.97 3.85 -73.05 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -0.37 Total: 19.68 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 3.82 Total: -0.49 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -2.20 Total: -105.99 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.06 Total: -29.29 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -76.89 3.85 -73.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.902 kcal (2) G-P(sol) polarization free energy of solvation -76.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds