Wall clock time and date at job start Mon Mar 30 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46816 * 2 1 4 4 C 1.46491 * 120.00655 * 86.06990 * 3 2 1 5 5 C 1.50703 * 109.47221 * 82.69892 * 4 3 2 6 6 H 1.08005 * 119.99737 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99915 * 180.02562 * 5 4 3 8 8 N 1.31504 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99771 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47161 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47024 * 119.99825 * 9 7 5 12 12 H 1.48500 * 109.47208 * 240.00089 * 9 7 5 13 13 C 1.34781 * 119.99493 * 266.06769 * 3 2 1 14 14 O 1.21565 * 120.00198 * 4.27814 * 13 3 2 15 15 C 1.47734 * 120.00054 * 184.27501 * 13 3 2 16 16 C 1.39652 * 120.08969 * 48.12180 * 15 13 3 17 17 C 1.37916 * 120.01714 * 179.97438 * 16 15 13 18 18 C 1.38477 * 120.20300 * 359.97438 * 17 16 15 19 19 F 1.35104 * 119.90932 * 180.02562 * 18 17 16 20 20 C 1.39239 * 120.17959 * 0.02562 * 18 17 16 21 21 N 1.39881 * 120.00927 * 180.02562 * 20 18 17 22 22 C 1.38495 * 119.98370 * 359.75476 * 20 18 17 23 23 H 1.08997 * 109.47361 * 300.00538 * 1 2 3 24 24 H 1.08998 * 109.47082 * 60.00077 * 1 2 3 25 25 H 1.09002 * 109.46809 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47361 * 239.99462 * 2 1 3 27 27 H 1.09002 * 109.47019 * 119.98976 * 2 1 3 28 28 H 1.09001 * 109.47556 * 202.69495 * 4 3 2 29 29 H 1.09002 * 109.47231 * 322.70124 * 4 3 2 30 30 H 0.97002 * 120.00115 * 179.97438 * 8 7 5 31 31 H 1.07996 * 119.98690 * 359.97438 * 16 15 13 32 32 H 1.08003 * 119.89633 * 179.97438 * 17 16 15 33 33 H 0.97001 * 120.00206 * 0.02562 * 21 20 18 34 34 H 0.96999 * 119.99981 * 180.02562 * 21 20 18 35 35 H 1.07995 * 120.10555 * 180.24841 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1805 2.1010 1.2656 5 6 3.5038 1.7338 1.8863 6 1 4.1583 1.0340 1.3880 7 6 3.8784 2.2906 3.0908 8 7 3.0807 3.1415 3.6982 9 14 5.5184 1.8349 3.8605 10 1 6.2230 0.8637 2.9855 11 1 6.3490 3.0560 4.0149 12 1 5.2865 1.2221 5.1931 13 6 2.3183 1.9899 -1.1645 14 8 2.1107 1.4212 -2.2187 15 6 2.8995 3.3481 -1.1599 16 6 3.9775 3.6455 -0.3234 17 6 4.5192 4.9138 -0.3207 18 6 3.9979 5.8958 -1.1463 19 9 4.5335 7.1361 -1.1392 20 6 2.9232 5.6084 -1.9836 21 7 2.3997 6.6029 -2.8164 22 6 2.3762 4.3361 -1.9958 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.1520 3.1746 1.0794 29 1 1.3726 1.8284 1.9447 30 1 3.3441 3.5329 4.5458 31 1 4.3870 2.8821 0.3214 32 1 5.3526 5.1418 0.3273 33 1 2.7856 7.4928 -2.8110 34 1 1.6508 6.4026 -3.3994 35 1 1.5452 4.1099 -2.6474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040332470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:37 Heat of formation + Delta-G solvation = -59.076255 kcal Electronic energy + Delta-G solvation = -20397.842061 eV Core-core repulsion = 17117.001905 eV Total energy + Delta-G solvation = -3280.840156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.53 seconds Orbital eigenvalues (eV) -48.49016 -39.67239 -37.89170 -35.27828 -34.27372 -32.80849 -30.95641 -29.81621 -28.11276 -27.14682 -23.86223 -23.12697 -22.22340 -21.68202 -18.82404 -17.34204 -17.03256 -16.76564 -16.39761 -15.69930 -15.32524 -15.25424 -14.64547 -14.46589 -14.00343 -13.60466 -13.43342 -12.99550 -12.69007 -12.37191 -12.26417 -12.14214 -11.86573 -11.61302 -11.44068 -10.95489 -10.88323 -10.68113 -10.44689 -10.29448 -10.06214 -9.75092 -9.18406 -8.62433 -8.37610 -7.75437 -7.21947 -6.23306 -4.30278 1.36818 1.90852 3.18178 3.27960 3.30229 3.37093 3.77722 4.05369 4.22107 4.31632 4.60426 5.07545 5.16278 5.32192 5.62066 5.69954 5.81628 5.82507 5.90199 6.10503 6.22344 6.28078 6.39170 6.45010 6.65558 6.77874 6.91084 6.99099 7.17866 7.22346 7.53011 7.62363 7.69706 7.83941 8.00179 8.30298 8.72972 8.94612 9.35449 10.82736 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.008731 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.294647 B = 3206.036387 C = 4798.724150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.587 5.587 4 C 0.231 3.769 5 C -0.541 4.541 6 H 0.065 0.935 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.890 3.110 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.557 3.443 14 O -0.569 6.569 15 C -0.083 4.083 16 C -0.088 4.088 17 C -0.114 4.114 18 C 0.028 3.972 19 F -0.149 7.149 20 C 0.167 3.833 21 N -0.880 5.880 22 C -0.129 4.129 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.266 0.734 31 H 0.171 0.829 32 H 0.135 0.865 33 H 0.398 0.602 34 H 0.399 0.601 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 3.162 -7.219 7.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.316 5.316 4 C 0.112 3.888 5 C -0.579 4.579 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.717 3.283 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.346 3.654 14 O -0.451 6.451 15 C -0.087 4.087 16 C -0.107 4.107 17 C -0.134 4.134 18 C 0.005 3.995 19 F -0.128 7.128 20 C 0.063 3.937 21 N -0.422 5.422 22 C -0.153 4.153 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.188 0.812 32 H 0.152 0.848 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.472 2.969 -7.513 8.211 hybrid contribution 0.765 0.457 0.554 1.049 sum -0.707 3.426 -6.959 7.789 Atomic orbital electron populations 1.22099 0.96829 1.01234 1.01983 1.21265 0.93530 0.83450 1.02598 1.48199 1.61978 1.13570 1.07861 1.19578 0.97249 0.92950 0.79059 1.21460 1.03415 1.27261 1.05780 0.91695 1.24932 0.97316 0.94648 0.96583 1.69928 1.36447 1.28678 1.16815 0.86553 0.83632 0.78628 0.79440 1.19465 1.20653 1.20808 1.18269 0.77823 0.85611 0.83745 1.90682 1.56081 1.66900 1.31436 1.19690 0.97786 0.93756 0.97451 1.21977 0.95049 0.97479 0.96228 1.20913 1.01259 0.92633 0.98558 1.17377 0.97720 0.81064 1.03373 1.91394 1.85509 1.39890 1.96037 1.17428 0.93452 0.89961 0.92813 1.42184 1.40264 1.12237 1.47524 1.20356 1.02536 0.90384 1.01991 0.92470 0.92900 0.92402 0.90963 0.90224 0.93569 0.94738 0.92449 0.81157 0.84751 0.77404 0.77288 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.11 2.10 6.15 -4.04 -0.02 2.07 16 3 N -0.59 -12.29 2.46 -176.22 -0.43 -12.72 16 4 C 0.23 5.34 4.67 -5.20 -0.02 5.32 16 5 C -0.54 -13.16 6.54 -34.44 -0.23 -13.38 16 6 H 0.06 1.60 7.77 -52.48 -0.41 1.19 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.88 -23.32 13.29 55.43 0.74 -22.58 16 9 Si 0.89 19.53 29.54 -169.99 -5.02 14.51 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.56 11.90 7.21 -12.38 -0.09 11.81 16 14 O -0.57 -13.02 16.57 5.31 0.09 -12.93 16 15 C -0.08 -1.65 4.73 -104.98 -0.50 -2.15 16 16 C -0.09 -1.74 7.71 -39.17 -0.30 -2.04 16 17 C -0.11 -2.07 10.00 -39.61 -0.40 -2.47 16 18 C 0.03 0.49 7.32 -39.12 -0.29 0.20 16 19 F -0.15 -2.44 16.63 2.25 0.04 -2.40 16 20 C 0.17 2.67 6.75 -83.72 -0.57 2.11 16 21 N -0.88 -10.64 9.10 32.44 0.30 -10.35 16 22 C -0.13 -2.25 9.56 -38.98 -0.37 -2.62 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.32 7.37 -51.93 -0.38 0.93 16 27 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 28 H 0.05 1.13 5.95 -51.93 -0.31 0.82 16 29 H 0.03 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 31 H 0.17 3.67 4.92 -52.49 -0.26 3.41 16 32 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 33 H 0.40 4.27 8.31 -40.82 -0.34 3.93 16 34 H 0.40 3.91 8.84 -40.82 -0.36 3.55 16 35 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -27.92 303.46 -6.37 -34.29 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.15 Total: 9.32 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.50 Total: -1.72 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.60 Total: -45.65 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.92 -6.37 -34.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040332470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.785 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.53 seconds