Wall clock time and date at job start Mon Mar 30 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46816 * 2 1 4 4 C 1.46491 * 120.00655 * 86.06990 * 3 2 1 5 5 C 1.50703 * 109.47221 * 82.69892 * 4 3 2 6 6 H 1.08005 * 119.99737 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99915 * 180.02562 * 5 4 3 8 8 N 1.31504 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99771 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47161 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47024 * 119.99825 * 9 7 5 12 12 H 1.48500 * 109.47208 * 240.00089 * 9 7 5 13 13 C 1.34781 * 119.99493 * 266.06769 * 3 2 1 14 14 O 1.21565 * 120.00198 * 4.27814 * 13 3 2 15 15 C 1.47734 * 120.00054 * 184.27501 * 13 3 2 16 16 C 1.39652 * 120.08969 * 48.12180 * 15 13 3 17 17 C 1.37916 * 120.01714 * 179.97438 * 16 15 13 18 18 C 1.38477 * 120.20300 * 359.97438 * 17 16 15 19 19 F 1.35104 * 119.90932 * 180.02562 * 18 17 16 20 20 C 1.39239 * 120.17959 * 0.02562 * 18 17 16 21 21 N 1.39881 * 120.00927 * 180.02562 * 20 18 17 22 22 C 1.38495 * 119.98370 * 359.75476 * 20 18 17 23 23 H 1.08997 * 109.47361 * 300.00538 * 1 2 3 24 24 H 1.08998 * 109.47082 * 60.00077 * 1 2 3 25 25 H 1.09002 * 109.46809 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47361 * 239.99462 * 2 1 3 27 27 H 1.09002 * 109.47019 * 119.98976 * 2 1 3 28 28 H 1.09001 * 109.47556 * 202.69495 * 4 3 2 29 29 H 1.09002 * 109.47231 * 322.70124 * 4 3 2 30 30 H 0.97002 * 120.00115 * 179.97438 * 8 7 5 31 31 H 1.07996 * 119.98690 * 359.97438 * 16 15 13 32 32 H 1.08003 * 119.89633 * 179.97438 * 17 16 15 33 33 H 0.97001 * 120.00206 * 0.02562 * 21 20 18 34 34 H 0.96999 * 119.99981 * 180.02562 * 21 20 18 35 35 H 1.07995 * 120.10555 * 180.24841 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1805 2.1010 1.2656 5 6 3.5038 1.7338 1.8863 6 1 4.1583 1.0340 1.3880 7 6 3.8784 2.2906 3.0908 8 7 3.0807 3.1415 3.6982 9 14 5.5184 1.8349 3.8605 10 1 6.2230 0.8637 2.9855 11 1 6.3490 3.0560 4.0149 12 1 5.2865 1.2221 5.1931 13 6 2.3183 1.9899 -1.1645 14 8 2.1107 1.4212 -2.2187 15 6 2.8995 3.3481 -1.1599 16 6 3.9775 3.6455 -0.3234 17 6 4.5192 4.9138 -0.3207 18 6 3.9979 5.8958 -1.1463 19 9 4.5335 7.1361 -1.1392 20 6 2.9232 5.6084 -1.9836 21 7 2.3997 6.6029 -2.8164 22 6 2.3762 4.3361 -1.9958 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.1520 3.1746 1.0794 29 1 1.3726 1.8284 1.9447 30 1 3.3441 3.5329 4.5458 31 1 4.3870 2.8821 0.3214 32 1 5.3526 5.1418 0.3273 33 1 2.7856 7.4928 -2.8110 34 1 1.6508 6.4026 -3.3994 35 1 1.5452 4.1099 -2.6474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040332470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:29 Heat of formation + Delta-G solvation = -75.543155 kcal Electronic energy + Delta-G solvation = -20398.556119 eV Core-core repulsion = 17117.001905 eV Total energy + Delta-G solvation = -3281.554214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -49.82273 -41.25263 -39.34963 -36.99912 -35.54361 -34.65805 -32.45763 -31.26900 -29.44377 -28.98740 -25.32218 -24.97656 -23.62625 -23.12666 -20.36907 -18.76605 -18.60055 -18.30143 -18.01238 -17.26289 -16.77289 -16.59528 -16.24127 -16.04693 -15.53352 -15.09887 -14.78744 -14.47831 -14.35461 -13.87937 -13.80477 -13.61519 -13.42664 -13.15606 -13.05263 -12.65778 -12.61117 -12.19020 -12.00238 -11.82356 -11.66112 -11.49005 -10.86887 -10.54560 -9.81912 -9.47094 -8.48209 -8.15949 -6.28041 -0.08220 0.50785 1.43582 1.48567 1.57420 1.75011 2.24564 2.45179 2.78197 2.85794 3.14163 3.26201 3.64094 3.88951 4.22040 4.29915 4.39091 4.42474 4.57721 4.74279 4.83857 4.85568 4.99961 5.00924 5.09362 5.22334 5.35834 5.44800 5.52995 5.69671 5.80420 5.86222 6.08918 6.42323 6.55200 6.82917 6.91215 7.24149 7.41971 8.89950 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.008731 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.294647 B = 3206.036387 C = 4798.724150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.589 5.589 4 C 0.249 3.751 5 C -0.537 4.537 6 H 0.059 0.941 7 C 0.031 3.969 8 N -0.913 5.913 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.555 3.445 14 O -0.588 6.588 15 C -0.101 4.101 16 C -0.105 4.105 17 C -0.117 4.117 18 C 0.024 3.976 19 F -0.142 7.142 20 C 0.182 3.818 21 N -0.861 5.861 22 C -0.132 4.132 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.408 0.592 34 H 0.413 0.587 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 3.719 -7.903 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.318 5.318 4 C 0.129 3.871 5 C -0.576 4.576 6 H 0.077 0.923 7 C -0.171 4.171 8 N -0.552 5.552 9 Si 0.773 3.227 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.344 3.656 14 O -0.472 6.472 15 C -0.104 4.104 16 C -0.126 4.126 17 C -0.136 4.136 18 C 0.000 4.000 19 F -0.121 7.121 20 C 0.076 3.924 21 N -0.404 5.404 22 C -0.156 4.156 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.238 0.762 34 H 0.244 0.756 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.440 3.539 -8.226 9.070 hybrid contribution 0.724 0.337 0.688 1.054 sum -0.716 3.876 -7.538 8.507 Atomic orbital electron populations 1.22009 0.94753 1.03100 1.01224 1.21470 0.95274 0.82087 1.02652 1.48231 1.62003 1.14454 1.07127 1.19204 0.96172 0.92275 0.79474 1.21544 1.03643 1.26693 1.05691 0.92255 1.25539 0.99987 0.94561 0.97005 1.70018 1.38030 1.29839 1.17278 0.85662 0.80259 0.78348 0.78429 1.19139 1.20342 1.20788 1.18530 0.77471 0.86195 0.83420 1.90654 1.57117 1.67564 1.31819 1.19701 0.98334 0.93672 0.98714 1.21694 0.96021 0.97824 0.97030 1.20987 1.01498 0.92252 0.98865 1.17365 0.98075 0.81122 1.03476 1.91411 1.85450 1.39287 1.95993 1.17404 0.92529 0.90163 0.92321 1.42174 1.40103 1.11812 1.46290 1.20457 1.02934 0.90410 1.01768 0.93083 0.93660 0.89253 0.90916 0.90072 0.95010 0.96364 0.92401 0.83282 0.83814 0.76176 0.75605 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 10.24 71.98 0.74 -3.96 16 2 C 0.11 3.90 6.15 86.38 0.53 4.43 16 3 N -0.59 -24.94 2.46 -829.69 -2.04 -26.99 16 4 C 0.25 11.74 4.67 85.64 0.40 12.14 16 5 C -0.54 -26.46 6.54 25.60 0.17 -26.29 16 6 H 0.06 2.95 7.77 -2.91 -0.02 2.92 16 7 C 0.03 1.53 5.46 84.66 0.46 1.99 16 8 N -0.91 -48.67 13.29 21.45 0.28 -48.39 16 9 Si 0.95 40.05 29.54 68.60 2.03 42.07 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.55 23.84 7.21 86.75 0.63 24.47 16 14 O -0.59 -26.86 16.57 -3.92 -0.06 -26.93 16 15 C -0.10 -4.00 4.73 -20.10 -0.09 -4.09 16 16 C -0.11 -4.24 7.71 22.54 0.17 -4.06 16 17 C -0.12 -4.19 10.00 22.25 0.22 -3.96 16 18 C 0.02 0.78 7.32 22.57 0.17 0.94 16 19 F -0.14 -4.34 16.63 44.97 0.75 -3.59 16 20 C 0.18 5.45 6.75 38.16 0.26 5.71 16 21 N -0.86 -18.20 9.10 -51.29 -0.47 -18.67 16 22 C -0.13 -4.44 9.56 22.66 0.22 -4.22 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.07 2.62 7.37 -2.39 -0.02 2.61 16 27 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 28 H 0.03 1.60 5.95 -2.39 -0.01 1.58 16 29 H 0.02 0.91 8.12 -2.39 -0.02 0.90 16 30 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.15 6.61 4.92 -2.91 -0.01 6.59 16 32 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.41 7.41 8.31 -92.71 -0.77 6.64 16 34 H 0.41 6.72 8.84 -92.71 -0.82 5.90 16 35 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -58.67 303.46 3.90 -54.78 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.45 Total: 24.62 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 3.86 Total: 3.09 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -2.22 Total: -94.04 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.06 Total: -26.93 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.75 Total: -3.59 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.07 kcal Total: -58.67 3.90 -54.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040332470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.765 kcal (2) G-P(sol) polarization free energy of solvation -58.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds