Wall clock time and date at job start Mon Mar 30 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47328 * 2 1 4 4 C 1.46499 * 120.00028 * 95.12098 * 3 2 1 5 5 C 1.50705 * 109.46736 * 269.99655 * 4 3 2 6 6 H 1.07996 * 120.00150 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99762 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00574 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99931 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46896 * 90.00121 * 9 7 5 11 11 H 1.48493 * 109.47343 * 209.99835 * 9 7 5 12 12 H 1.48499 * 109.46824 * 330.00297 * 9 7 5 13 13 C 1.34777 * 119.99860 * 275.11106 * 3 2 1 14 14 O 1.21572 * 119.99677 * 174.49070 * 13 3 2 15 15 C 1.47704 * 120.00323 * 354.49696 * 13 3 2 16 16 C 1.39614 * 120.12683 * 305.02052 * 15 13 3 17 17 C 1.38510 * 119.79620 * 179.81130 * 16 15 13 18 18 N 1.39857 * 119.96662 * 180.21090 * 17 16 15 19 19 C 1.39059 * 120.06631 * 0.45147 * 17 16 15 20 20 C 1.38117 * 120.26526 * 359.77827 * 19 17 16 21 21 C 1.38318 * 120.20385 * 0.02562 * 20 19 17 22 22 F 1.35096 * 120.04006 * 179.97438 * 21 20 19 23 23 H 1.08993 * 109.47632 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46486 * 300.00242 * 1 2 3 25 25 H 1.09002 * 109.46573 * 59.99417 * 1 2 3 26 26 H 1.08999 * 109.46486 * 239.99758 * 2 1 3 27 27 H 1.09002 * 109.46573 * 120.00583 * 2 1 3 28 28 H 1.09004 * 109.47009 * 29.98986 * 4 3 2 29 29 H 1.08996 * 109.47266 * 149.99867 * 4 3 2 30 30 H 0.96998 * 120.00573 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.10290 * 0.03025 * 16 15 13 32 32 H 0.96993 * 120.00203 * 180.23647 * 18 17 16 33 33 H 0.96999 * 119.99470 * 0.23335 * 18 17 16 34 34 H 1.08000 * 119.86706 * 179.76329 * 19 17 16 35 35 H 1.08002 * 119.89627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3694 2.0340 1.2637 5 6 1.1555 2.7297 1.8237 6 1 0.2164 2.6892 1.2917 7 6 1.2435 3.4170 3.0157 8 7 2.3865 3.4651 3.6642 9 14 -0.2610 4.2799 3.7095 10 1 -1.0060 3.3445 4.5901 11 1 0.1665 5.4651 4.4954 12 1 -1.1397 4.7159 2.5945 13 6 2.1450 2.0511 -1.1626 14 8 2.4538 3.2270 -1.1560 15 6 1.9085 1.3569 -2.4447 16 6 2.6128 0.1908 -2.7505 17 6 2.3828 -0.4568 -3.9530 18 7 3.0831 -1.6276 -4.2611 19 6 1.4599 0.0586 -4.8565 20 6 0.7652 1.2146 -4.5588 21 6 0.9832 1.8681 -3.3594 22 9 0.3022 2.9989 -3.0718 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7193 1.2853 1.9745 29 1 3.1584 2.7652 1.0880 30 1 2.4485 3.9489 4.5026 31 1 3.3322 -0.2070 -2.0500 32 1 2.9250 -2.0796 -5.1045 33 1 3.7271 -1.9874 -3.6312 34 1 1.2859 -0.4469 -5.7949 35 1 0.0501 1.6099 -5.2651 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040332476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:33 Heat of formation + Delta-G solvation = -51.031801 kcal Electronic energy + Delta-G solvation = -20409.628105 eV Core-core repulsion = 17129.136783 eV Total energy + Delta-G solvation = -3280.491322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -48.42141 -39.80162 -38.22710 -35.25455 -34.26996 -32.75744 -31.23948 -29.94714 -28.25740 -27.12154 -24.30967 -22.90679 -22.49151 -21.84033 -19.03602 -17.42518 -17.20490 -16.91685 -16.46103 -15.81801 -15.44776 -15.15924 -14.93498 -14.24120 -14.05590 -13.88512 -13.16913 -13.06701 -12.88630 -12.80342 -12.71120 -12.12279 -12.04922 -11.57563 -11.18272 -11.13156 -10.87541 -10.68028 -10.46744 -10.34226 -10.01873 -9.53896 -9.14806 -8.85086 -8.38052 -7.64684 -7.53605 -5.99375 -4.02741 1.04248 1.38070 3.27684 3.34482 3.41206 3.47156 3.63425 3.67561 4.04914 4.48512 4.52148 4.73135 4.86153 5.08431 5.29443 5.35367 5.49553 5.68493 5.74097 5.81325 5.91719 6.01864 6.15554 6.20013 6.25152 6.37966 6.74098 6.80372 7.07726 7.27630 7.44088 7.55683 7.57855 7.97326 8.28162 8.39593 8.92771 9.08098 9.61745 11.08957 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.005684 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.513803 B = 4924.927797 C = 5264.701757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.547 3.453 14 O -0.522 6.522 15 C -0.093 4.093 16 C -0.144 4.144 17 C 0.199 3.801 18 N -0.878 5.878 19 C -0.161 4.161 20 C -0.111 4.111 21 C 0.082 3.918 22 F -0.130 7.130 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.136 0.864 32 H 0.398 0.602 33 H 0.399 0.601 34 H 0.129 0.871 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -13.376 -15.732 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.021 4.021 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.559 4.559 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.332 3.668 14 O -0.399 6.399 15 C -0.098 4.098 16 C -0.167 4.167 17 C 0.095 3.905 18 N -0.418 5.418 19 C -0.183 4.183 20 C -0.130 4.130 21 C 0.060 3.940 22 F -0.109 7.109 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.147 0.853 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.494 -12.581 -15.487 19.960 hybrid contribution -0.807 0.315 0.454 0.978 sum -1.302 -12.266 -15.034 19.447 Atomic orbital electron populations 1.22186 0.96366 1.00860 1.03139 1.21613 0.94736 0.83696 1.02053 1.48191 1.62847 1.13229 1.07664 1.19350 0.96876 0.93104 0.77925 1.21443 0.96381 1.32389 1.05687 0.92249 1.24921 0.96191 0.96192 0.96811 1.69925 1.24444 1.42820 1.16454 0.86519 0.82929 0.79214 0.78947 1.20695 1.21121 1.19823 1.17942 0.79152 0.86431 0.83255 1.90802 1.47420 1.14771 1.86867 1.20097 0.97535 0.96068 0.96131 1.20506 1.03461 0.95705 0.97004 1.17593 0.92153 0.87616 0.93091 1.42402 1.47948 1.27367 1.24124 1.20435 0.99663 0.98091 1.00157 1.20795 1.00936 0.95791 0.95491 1.17421 0.95769 0.85912 0.94866 1.91539 1.77727 1.47957 1.93652 0.92801 0.90824 0.93371 0.91276 0.90504 0.94776 0.93928 0.92796 0.84669 0.77415 0.77243 0.85265 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.20 37.16 0.38 -2.40 16 2 C 0.10 1.74 5.94 -4.04 -0.02 1.72 16 3 N -0.59 -12.96 2.47 -176.22 -0.43 -13.40 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.52 -15.05 9.19 -34.44 -0.32 -15.37 16 6 H 0.06 1.74 7.41 -52.49 -0.39 1.35 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.55 12.43 6.81 -12.39 -0.08 12.34 16 14 O -0.52 -14.34 16.52 5.30 0.09 -14.25 16 15 C -0.09 -1.65 4.87 -104.93 -0.51 -2.17 16 16 C -0.14 -1.94 7.45 -38.97 -0.29 -2.23 16 17 C 0.20 2.12 6.75 -83.79 -0.57 1.56 16 18 N -0.88 -6.05 9.10 32.40 0.29 -5.75 16 19 C -0.16 -1.65 9.88 -39.32 -0.39 -2.04 16 20 C -0.11 -1.38 10.00 -39.60 -0.40 -1.78 16 21 C 0.08 1.40 7.27 -38.97 -0.28 1.12 16 22 F -0.13 -2.60 16.66 2.25 0.04 -2.57 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.41 7.54 -51.93 -0.39 1.02 16 25 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 26 H 0.07 0.97 4.52 -51.93 -0.23 0.73 16 27 H 0.08 1.23 7.84 -51.93 -0.41 0.83 16 28 H 0.03 0.90 7.86 -51.93 -0.41 0.49 16 29 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.14 1.66 7.36 -52.49 -0.39 1.28 16 32 H 0.40 1.85 8.84 -40.82 -0.36 1.49 16 33 H 0.40 2.25 8.84 -40.82 -0.36 1.89 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -35.13 306.18 -6.44 -41.57 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.15 Total: -0.32 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.60 Total: -1.05 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.60 Total: -45.40 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.13 -6.44 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040332476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.460 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds