Wall clock time and date at job start Mon Mar 30 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47328 * 2 1 4 4 C 1.46499 * 120.00028 * 95.12098 * 3 2 1 5 5 C 1.50705 * 109.46736 * 269.99655 * 4 3 2 6 6 H 1.07996 * 120.00150 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99762 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00574 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99931 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46896 * 90.00121 * 9 7 5 11 11 H 1.48493 * 109.47343 * 209.99835 * 9 7 5 12 12 H 1.48499 * 109.46824 * 330.00297 * 9 7 5 13 13 C 1.34777 * 119.99860 * 275.11106 * 3 2 1 14 14 O 1.21572 * 119.99677 * 174.49070 * 13 3 2 15 15 C 1.47704 * 120.00323 * 354.49696 * 13 3 2 16 16 C 1.39614 * 120.12683 * 305.02052 * 15 13 3 17 17 C 1.38510 * 119.79620 * 179.81130 * 16 15 13 18 18 N 1.39857 * 119.96662 * 180.21090 * 17 16 15 19 19 C 1.39059 * 120.06631 * 0.45147 * 17 16 15 20 20 C 1.38117 * 120.26526 * 359.77827 * 19 17 16 21 21 C 1.38318 * 120.20385 * 0.02562 * 20 19 17 22 22 F 1.35096 * 120.04006 * 179.97438 * 21 20 19 23 23 H 1.08993 * 109.47632 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46486 * 300.00242 * 1 2 3 25 25 H 1.09002 * 109.46573 * 59.99417 * 1 2 3 26 26 H 1.08999 * 109.46486 * 239.99758 * 2 1 3 27 27 H 1.09002 * 109.46573 * 120.00583 * 2 1 3 28 28 H 1.09004 * 109.47009 * 29.98986 * 4 3 2 29 29 H 1.08996 * 109.47266 * 149.99867 * 4 3 2 30 30 H 0.96998 * 120.00573 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.10290 * 0.03025 * 16 15 13 32 32 H 0.96993 * 120.00203 * 180.23647 * 18 17 16 33 33 H 0.96999 * 119.99470 * 0.23335 * 18 17 16 34 34 H 1.08000 * 119.86706 * 179.76329 * 19 17 16 35 35 H 1.08002 * 119.89627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3694 2.0340 1.2637 5 6 1.1555 2.7297 1.8237 6 1 0.2164 2.6892 1.2917 7 6 1.2435 3.4170 3.0157 8 7 2.3865 3.4651 3.6642 9 14 -0.2610 4.2799 3.7095 10 1 -1.0060 3.3445 4.5901 11 1 0.1665 5.4651 4.4954 12 1 -1.1397 4.7159 2.5945 13 6 2.1450 2.0511 -1.1626 14 8 2.4538 3.2270 -1.1560 15 6 1.9085 1.3569 -2.4447 16 6 2.6128 0.1908 -2.7505 17 6 2.3828 -0.4568 -3.9530 18 7 3.0831 -1.6276 -4.2611 19 6 1.4599 0.0586 -4.8565 20 6 0.7652 1.2146 -4.5588 21 6 0.9832 1.8681 -3.3594 22 9 0.3022 2.9989 -3.0718 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7193 1.2853 1.9745 29 1 3.1584 2.7652 1.0880 30 1 2.4485 3.9489 4.5026 31 1 3.3322 -0.2070 -2.0500 32 1 2.9250 -2.0796 -5.1045 33 1 3.7271 -1.9874 -3.6312 34 1 1.2859 -0.4469 -5.7949 35 1 0.0501 1.6099 -5.2651 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040332476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:29 Heat of formation + Delta-G solvation = -76.481188 kcal Electronic energy + Delta-G solvation = -20410.731673 eV Core-core repulsion = 17129.136783 eV Total energy + Delta-G solvation = -3281.594890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -49.75812 -41.21062 -39.55135 -37.05267 -35.21341 -34.83288 -32.47843 -31.54967 -29.30684 -29.00162 -25.86729 -24.58145 -23.79308 -23.11834 -20.49281 -18.75135 -18.46129 -18.40629 -18.10315 -17.41556 -16.79312 -16.47059 -16.33772 -15.94086 -15.53796 -15.20547 -14.61972 -14.54869 -14.30043 -13.96033 -13.89844 -13.77461 -13.61431 -13.30912 -13.04264 -12.80849 -12.58371 -12.27687 -12.21894 -11.85089 -11.67916 -11.32835 -10.79961 -10.64368 -10.06550 -9.50336 -8.40718 -8.23703 -6.36559 -0.04973 0.35423 1.32987 1.36726 1.47035 1.70311 2.22536 2.39658 2.67738 2.98313 3.05775 3.41935 3.50745 3.82788 4.08736 4.19139 4.30686 4.41752 4.56636 4.68982 4.80156 4.88665 4.93721 5.00200 5.12897 5.15505 5.20583 5.23802 5.40859 5.57159 5.74298 5.81472 6.05115 6.54533 6.62582 6.71656 7.06481 7.21819 7.37595 8.83750 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.005684 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.513803 B = 4924.927797 C = 5264.701757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.591 5.591 4 C 0.260 3.740 5 C -0.537 4.537 6 H 0.047 0.953 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.540 3.460 14 O -0.590 6.590 15 C -0.115 4.115 16 C -0.152 4.152 17 C 0.220 3.780 18 N -0.856 5.856 19 C -0.142 4.142 20 C -0.097 4.097 21 C 0.036 3.964 22 F -0.162 7.162 23 H 0.096 0.904 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.034 0.966 29 H -0.003 1.003 30 H 0.268 0.732 31 H 0.144 0.856 32 H 0.415 0.585 33 H 0.409 0.591 34 H 0.176 0.824 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -16.571 -17.961 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.320 5.320 4 C 0.139 3.861 5 C -0.575 4.575 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.328 3.672 14 O -0.471 6.471 15 C -0.120 4.120 16 C -0.175 4.175 17 C 0.113 3.887 18 N -0.397 5.397 19 C -0.165 4.165 20 C -0.116 4.116 21 C 0.015 3.985 22 F -0.141 7.141 23 H 0.115 0.885 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.246 0.754 33 H 0.239 0.761 34 H 0.194 0.806 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.342 -15.882 -17.739 23.847 hybrid contribution -0.459 1.156 1.020 1.609 sum -1.802 -14.726 -16.719 22.352 Atomic orbital electron populations 1.22110 0.95864 1.02888 1.00930 1.21970 0.95117 0.81028 1.04329 1.48199 1.62579 1.15078 1.06179 1.18856 0.94975 0.92272 0.79993 1.21636 0.96510 1.33277 1.06106 0.93466 1.25790 0.99336 0.96695 0.97080 1.70028 1.26323 1.43407 1.16901 0.85485 0.79134 0.78479 0.78148 1.18451 1.20293 1.20473 1.18827 0.77393 0.85927 0.85058 1.90735 1.50374 1.17914 1.88108 1.19704 1.00362 0.98055 0.93882 1.20511 1.03427 0.94764 0.98821 1.17602 0.91515 0.87928 0.91646 1.42406 1.46698 1.25578 1.24988 1.20940 0.97576 0.96669 1.01269 1.21094 1.01022 0.95773 0.93697 1.17938 0.97295 0.86298 0.97010 1.91446 1.78589 1.49915 1.94136 0.88507 0.94169 0.94401 0.87539 0.89546 0.94853 0.98460 0.92350 0.83818 0.75397 0.76114 0.80641 0.81928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 10.20 71.98 0.73 -4.49 16 2 C 0.10 3.25 5.94 86.38 0.51 3.77 16 3 N -0.59 -27.34 2.47 -829.72 -2.05 -29.38 16 4 C 0.26 14.72 5.16 85.63 0.44 15.16 16 5 C -0.54 -32.62 9.19 25.60 0.24 -32.39 16 6 H 0.05 2.92 7.41 -2.91 -0.02 2.89 16 7 C 0.01 0.59 5.46 84.65 0.46 1.06 16 8 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 9 Si 0.96 47.11 29.54 68.60 2.03 49.14 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 13 C 0.54 26.04 6.81 86.75 0.59 26.63 16 14 O -0.59 -35.21 16.52 -3.94 -0.07 -35.27 16 15 C -0.12 -4.14 4.87 -20.07 -0.10 -4.24 16 16 C -0.15 -3.79 7.45 22.67 0.17 -3.62 16 17 C 0.22 3.70 6.75 38.12 0.26 3.96 16 18 N -0.86 -7.04 9.10 -51.41 -0.47 -7.50 16 19 C -0.14 -2.18 9.88 22.44 0.22 -1.96 16 20 C -0.10 -2.14 10.00 22.26 0.22 -1.92 16 21 C 0.04 1.25 7.27 22.67 0.16 1.42 16 22 F -0.16 -6.88 16.66 44.97 0.75 -6.13 16 23 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.04 1.56 7.54 -2.39 -0.02 1.55 16 25 H 0.04 1.30 8.05 -2.39 -0.02 1.28 16 26 H 0.11 2.77 4.52 -2.39 -0.01 2.76 16 27 H 0.09 2.71 7.84 -2.39 -0.02 2.69 16 28 H 0.03 1.86 7.86 -2.38 -0.02 1.84 16 29 H 0.00 -0.18 7.50 -2.39 -0.02 -0.19 16 30 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.14 3.23 7.36 -2.91 -0.02 3.21 16 32 H 0.41 1.21 8.84 -92.71 -0.82 0.39 16 33 H 0.41 2.51 8.84 -92.71 -0.82 1.69 16 34 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 35 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -84.58 306.18 3.89 -80.68 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -0.50 Total: 2.27 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 3.91 Total: 3.38 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -2.23 Total: -94.07 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.07 Total: -35.27 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.75 Total: -6.13 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -84.58 3.89 -80.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040332476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.203 kcal (2) G-P(sol) polarization free energy of solvation -84.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds