Wall clock time and date at job start Mon Mar 30 2020 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46879 * 2 1 4 4 C 1.46499 * 119.99697 * 96.93324 * 3 2 1 5 5 C 1.50702 * 109.46926 * 269.99517 * 4 3 2 6 6 C 1.34507 * 125.78927 * 90.00321 * 5 4 3 7 7 C 1.41390 * 106.83975 * 179.97438 * 6 5 4 8 8 C 1.34516 * 106.84217 * 0.02562 * 7 6 5 9 9 O 1.34307 * 125.78665 * 269.69566 * 5 4 3 10 10 C 1.34776 * 120.00197 * 276.92542 * 3 2 1 11 11 O 1.21437 * 120.00089 * 176.20365 * 10 3 2 12 12 C 1.48835 * 119.99764 * 356.20016 * 10 3 2 13 13 O 1.21495 * 119.99873 * 5.71886 * 12 10 3 14 14 N 1.34775 * 119.99763 * 185.71678 * 12 10 3 15 15 C 1.36122 * 119.99667 * 179.97438 * 14 12 10 16 16 H 1.07996 * 120.00478 * 0.02562 * 15 14 12 17 17 C 1.39592 * 119.99692 * 179.97438 * 15 14 12 18 18 N 1.31015 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99711 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47091 * 90.00487 * 19 17 15 21 21 H 1.48504 * 109.46956 * 210.00182 * 19 17 15 22 22 H 1.48499 * 109.47295 * 330.00111 * 19 17 15 23 23 H 1.08997 * 109.46965 * 60.00081 * 1 2 3 24 24 H 1.09002 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47133 * 299.99557 * 1 2 3 26 26 H 1.08997 * 109.46789 * 239.99745 * 2 1 3 27 27 H 1.09007 * 109.46938 * 120.00111 * 2 1 3 28 28 H 1.09000 * 109.47946 * 29.99602 * 4 3 2 29 29 H 1.09004 * 109.47099 * 149.99563 * 4 3 2 30 30 H 1.07996 * 126.58201 * 0.03050 * 6 5 4 31 31 H 1.07998 * 126.57732 * 179.97438 * 7 6 5 32 32 H 1.07996 * 125.79278 * 180.02562 * 8 7 6 33 33 H 0.97004 * 120.00161 * 0.02562 * 14 12 10 34 34 H 0.97001 * 119.99171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4068 2.0207 1.2595 5 6 1.2102 2.7102 1.8628 6 6 0.3327 2.1572 2.7192 7 6 -0.6223 3.1533 3.0271 8 6 -0.2716 4.2552 2.3399 9 8 0.8425 3.9827 1.6409 10 6 2.1102 2.0635 -1.1587 11 8 2.4490 3.2296 -1.1514 12 6 1.7966 1.3877 -2.4471 13 8 1.3585 0.2545 -2.4477 14 7 1.9986 2.0328 -3.6130 15 6 1.7122 1.4145 -4.7914 16 1 1.3228 0.4072 -4.7921 17 6 1.9210 2.0828 -5.9990 18 7 2.3929 3.3050 -5.9982 19 14 1.5273 1.2346 -7.6161 20 1 0.1179 1.5139 -7.9913 21 1 2.4325 1.7460 -8.6765 22 1 1.7187 -0.2303 -7.4661 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.7778 1.2648 1.9516 29 1 3.1904 2.7539 1.0681 30 1 0.3541 1.1467 3.0995 31 1 -1.4710 3.0492 3.6868 32 1 -0.7940 5.2003 2.3523 33 1 2.3487 2.9374 -3.6125 34 1 2.5383 3.7692 -6.8374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042445927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:44 Heat of formation + Delta-G solvation = -41.826984 kcal Electronic energy + Delta-G solvation = -20361.203428 eV Core-core repulsion = 17068.738468 eV Total energy + Delta-G solvation = -3292.464961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.41809 -39.74974 -37.28074 -35.91558 -34.10734 -32.83777 -31.51072 -31.24139 -29.44649 -26.57812 -25.31982 -23.31470 -21.93722 -21.60723 -20.42128 -18.93517 -18.07577 -17.36470 -16.56703 -16.29030 -15.60698 -15.23149 -15.00485 -14.30128 -14.12581 -13.97991 -13.47061 -13.25678 -12.78123 -12.69890 -12.60722 -12.41616 -12.03735 -11.77458 -11.71968 -11.40894 -11.23259 -10.65647 -10.50206 -10.41959 -10.13670 -9.79067 -9.66502 -8.58854 -8.44983 -8.22547 -7.89876 -6.67967 -4.00143 1.77928 2.41464 2.65109 3.11081 3.15110 3.19092 3.20754 3.42044 4.03648 4.24159 4.75883 4.80776 5.08048 5.11185 5.17114 5.28164 5.42126 5.56656 5.83024 5.89157 5.93776 5.96203 6.00342 6.15690 6.18830 6.53512 6.57934 6.77257 6.94320 7.27968 7.30200 7.61978 7.77732 8.30368 8.57294 8.94854 9.30835 9.84155 10.46810 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.004916 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.474670 B = 5693.870991 C = 6054.418071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.100 3.900 3 N -0.594 5.594 4 C 0.190 3.810 5 C -0.018 4.018 6 C -0.204 4.204 7 C -0.220 4.220 8 C -0.042 4.042 9 O -0.162 6.162 10 C 0.513 3.487 11 O -0.538 6.538 12 C 0.395 3.605 13 O -0.584 6.584 14 N -0.498 5.498 15 C -0.305 4.305 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.868 5.868 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.124 0.876 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.199 0.801 33 H 0.404 0.596 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -2.086 14.089 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.022 4.022 3 N -0.328 5.328 4 C 0.067 3.933 5 C -0.070 4.070 6 C -0.224 4.224 7 C -0.239 4.239 8 C -0.111 4.111 9 O -0.056 6.056 10 C 0.299 3.701 11 O -0.414 6.414 12 C 0.180 3.820 13 O -0.474 6.474 14 N -0.132 5.132 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.506 5.506 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.142 0.858 27 H 0.077 0.923 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.215 0.785 33 H 0.239 0.761 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.142 -1.845 13.721 14.009 hybrid contribution -0.404 0.219 -0.464 0.653 sum -2.546 -1.626 13.257 13.597 Atomic orbital electron populations 1.22093 0.96112 1.01503 1.01926 1.22143 0.95012 0.80912 1.04100 1.47875 1.65345 1.14882 1.04739 1.19841 0.91281 0.96519 0.85644 1.23047 1.00696 0.82959 1.00331 1.21531 0.96955 1.00869 1.03008 1.21773 1.02762 0.93878 1.05498 1.24056 0.89146 1.01027 0.96826 1.84144 1.36920 1.28599 1.55955 1.20839 0.77212 0.86230 0.85793 1.90704 1.46776 1.16392 1.87491 1.18840 0.90824 0.88248 0.84116 1.90459 1.52618 1.18559 1.85717 1.41579 1.50895 1.16422 1.04286 1.19875 1.40707 1.01073 0.81903 0.86902 1.25592 0.95932 0.95578 1.00488 1.69490 1.40584 1.11132 1.29411 0.85724 0.78516 0.79663 0.79668 1.19926 1.20533 1.18882 0.91643 0.92376 0.93682 0.85805 0.92346 0.87401 0.88385 0.83680 0.83757 0.78470 0.76061 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.73 37.16 0.36 -2.17 16 2 C 0.10 1.59 5.75 -4.04 -0.02 1.56 16 3 N -0.59 -10.49 2.47 -175.80 -0.43 -10.93 16 4 C 0.19 2.76 5.95 -5.19 -0.03 2.73 16 5 C -0.02 -0.28 6.88 -35.63 -0.25 -0.52 16 6 C -0.20 -2.67 9.33 -39.70 -0.37 -3.04 16 7 C -0.22 -2.71 10.91 -39.70 -0.43 -3.15 16 8 C -0.04 -0.55 12.09 29.42 0.36 -0.19 16 9 O -0.16 -2.71 10.65 5.68 0.06 -2.65 16 10 C 0.51 11.35 7.65 -11.87 -0.09 11.26 16 11 O -0.54 -12.93 16.10 5.42 0.09 -12.84 16 12 C 0.40 9.76 7.58 -11.87 -0.09 9.67 16 13 O -0.58 -14.61 11.36 5.37 0.06 -14.55 16 14 N -0.50 -13.21 5.24 -11.59 -0.06 -13.27 16 15 C -0.30 -8.27 9.67 -15.14 -0.15 -8.42 16 16 H 0.11 3.10 7.15 -52.49 -0.38 2.72 16 17 C 0.03 0.80 5.51 -17.39 -0.10 0.71 16 18 N -0.87 -23.22 13.03 55.53 0.72 -22.50 16 19 Si 0.94 19.92 29.56 -169.99 -5.02 14.90 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 H 0.06 1.28 7.00 -51.93 -0.36 0.92 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.67 6.57 -51.93 -0.34 0.33 16 26 H 0.12 2.29 5.40 -51.93 -0.28 2.01 16 27 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 28 H 0.11 1.12 7.85 -51.93 -0.41 0.72 16 29 H 0.10 1.49 7.48 -51.93 -0.39 1.10 16 30 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.40 10.94 7.36 -40.82 -0.30 10.64 16 34 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -30.93 298.04 -4.59 -35.52 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.69 Total: 13.41 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -0.81 Total: 8.42 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.23 Total: -46.70 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: 0.21 Total: -30.04 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.93 -4.59 -35.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042445927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.306 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds