Wall clock time and date at job start Mon Mar 30 2020 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46879 * 2 1 4 4 C 1.46499 * 119.99697 * 96.93324 * 3 2 1 5 5 C 1.50702 * 109.46926 * 269.99517 * 4 3 2 6 6 C 1.34507 * 125.78927 * 90.00321 * 5 4 3 7 7 C 1.41390 * 106.83975 * 179.97438 * 6 5 4 8 8 C 1.34516 * 106.84217 * 0.02562 * 7 6 5 9 9 O 1.34307 * 125.78665 * 269.69566 * 5 4 3 10 10 C 1.34776 * 120.00197 * 276.92542 * 3 2 1 11 11 O 1.21437 * 120.00089 * 176.20365 * 10 3 2 12 12 C 1.48835 * 119.99764 * 356.20016 * 10 3 2 13 13 O 1.21495 * 119.99873 * 5.71886 * 12 10 3 14 14 N 1.34775 * 119.99763 * 185.71678 * 12 10 3 15 15 C 1.36122 * 119.99667 * 179.97438 * 14 12 10 16 16 H 1.07996 * 120.00478 * 0.02562 * 15 14 12 17 17 C 1.39592 * 119.99692 * 179.97438 * 15 14 12 18 18 N 1.31015 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99711 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47091 * 90.00487 * 19 17 15 21 21 H 1.48504 * 109.46956 * 210.00182 * 19 17 15 22 22 H 1.48499 * 109.47295 * 330.00111 * 19 17 15 23 23 H 1.08997 * 109.46965 * 60.00081 * 1 2 3 24 24 H 1.09002 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47133 * 299.99557 * 1 2 3 26 26 H 1.08997 * 109.46789 * 239.99745 * 2 1 3 27 27 H 1.09007 * 109.46938 * 120.00111 * 2 1 3 28 28 H 1.09000 * 109.47946 * 29.99602 * 4 3 2 29 29 H 1.09004 * 109.47099 * 149.99563 * 4 3 2 30 30 H 1.07996 * 126.58201 * 0.03050 * 6 5 4 31 31 H 1.07998 * 126.57732 * 179.97438 * 7 6 5 32 32 H 1.07996 * 125.79278 * 180.02562 * 8 7 6 33 33 H 0.97004 * 120.00161 * 0.02562 * 14 12 10 34 34 H 0.97001 * 119.99171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4068 2.0207 1.2595 5 6 1.2102 2.7102 1.8628 6 6 0.3327 2.1572 2.7192 7 6 -0.6223 3.1533 3.0271 8 6 -0.2716 4.2552 2.3399 9 8 0.8425 3.9827 1.6409 10 6 2.1102 2.0635 -1.1587 11 8 2.4490 3.2296 -1.1514 12 6 1.7966 1.3877 -2.4471 13 8 1.3585 0.2545 -2.4477 14 7 1.9986 2.0328 -3.6130 15 6 1.7122 1.4145 -4.7914 16 1 1.3228 0.4072 -4.7921 17 6 1.9210 2.0828 -5.9990 18 7 2.3929 3.3050 -5.9982 19 14 1.5273 1.2346 -7.6161 20 1 0.1179 1.5139 -7.9913 21 1 2.4325 1.7460 -8.6765 22 1 1.7187 -0.2303 -7.4661 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.7778 1.2648 1.9516 29 1 3.1904 2.7539 1.0681 30 1 0.3541 1.1467 3.0995 31 1 -1.4710 3.0492 3.6868 32 1 -0.7940 5.2003 2.3523 33 1 2.3487 2.9374 -3.6125 34 1 2.5383 3.7692 -6.8374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042445927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:44 Heat of formation + Delta-G solvation = -63.247239 kcal Electronic energy + Delta-G solvation = -20362.132280 eV Core-core repulsion = 17068.738468 eV Total energy + Delta-G solvation = -3293.393813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.47561 -41.48489 -39.14880 -37.52632 -36.01310 -33.90597 -33.42871 -32.50916 -30.74837 -28.18998 -26.93496 -24.82186 -23.50463 -22.63201 -21.58065 -20.71620 -19.93658 -18.54445 -18.19156 -17.84067 -17.04354 -16.73602 -16.67328 -15.92830 -15.70880 -15.50158 -14.99656 -14.66315 -14.40532 -14.06043 -13.68204 -13.63894 -13.53903 -13.29780 -12.97831 -12.97631 -12.66549 -12.53365 -12.14758 -12.09119 -11.84558 -11.50671 -10.79852 -10.24860 -10.04676 -9.88901 -9.34451 -8.63547 -6.07882 0.56455 0.74040 1.41263 1.46839 1.55361 1.62386 1.95540 2.17821 2.29781 2.40486 3.10268 3.17118 3.78050 3.91987 4.10054 4.17306 4.21660 4.31992 4.44330 4.57545 4.71848 4.84203 4.91977 5.01784 5.16641 5.20074 5.27186 5.41489 5.56489 5.65934 5.71130 6.06215 6.28312 6.35971 6.78081 6.98743 7.30596 7.83000 8.52546 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.004916 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.474670 B = 5693.870991 C = 6054.418071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.096 3.904 3 N -0.579 5.579 4 C 0.187 3.813 5 C -0.054 4.054 6 C -0.189 4.189 7 C -0.223 4.223 8 C -0.054 4.054 9 O -0.200 6.200 10 C 0.511 3.489 11 O -0.565 6.565 12 C 0.394 3.606 13 O -0.589 6.589 14 N -0.517 5.517 15 C -0.341 4.341 16 H 0.102 0.898 17 C -0.007 4.007 18 N -0.901 5.901 19 Si 1.010 2.990 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.261 1.261 23 H 0.019 0.981 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.226 0.774 33 H 0.397 0.603 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 -3.455 15.834 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 N -0.311 5.311 4 C 0.066 3.934 5 C -0.105 4.105 6 C -0.209 4.209 7 C -0.242 4.242 8 C -0.121 4.121 9 O -0.097 6.097 10 C 0.296 3.704 11 O -0.444 6.444 12 C 0.179 3.821 13 O -0.477 6.477 14 N -0.151 5.151 15 C -0.470 4.470 16 H 0.120 0.880 17 C -0.211 4.211 18 N -0.539 5.539 19 Si 0.831 3.169 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.185 1.185 23 H 0.039 0.961 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.176 0.824 29 H 0.102 0.898 30 H 0.191 0.809 31 H 0.191 0.809 32 H 0.242 0.758 33 H 0.231 0.769 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.897 -3.251 15.516 16.115 hybrid contribution -0.225 0.619 -0.785 1.025 sum -3.121 -2.632 14.731 15.287 Atomic orbital electron populations 1.22012 0.96032 1.02436 1.00349 1.22233 0.94983 0.79850 1.05386 1.47944 1.63318 1.15300 1.04576 1.20210 0.91059 0.97557 0.84589 1.23181 1.01943 0.83104 1.02275 1.21920 0.95718 1.01968 1.01298 1.22198 1.03336 0.93232 1.05435 1.24810 0.88288 1.02769 0.96268 1.84117 1.38483 1.29763 1.57325 1.20389 0.77679 0.85964 0.86331 1.90687 1.48452 1.17340 1.87922 1.19481 0.89468 0.88191 0.84942 1.90459 1.52148 1.18760 1.86377 1.41688 1.52188 1.16270 1.04958 1.19969 1.42891 1.01174 0.83005 0.88048 1.26539 0.94980 0.96070 1.03507 1.69569 1.41256 1.12380 1.30677 0.84695 0.78588 0.78553 0.75084 1.19217 1.19312 1.18512 0.96145 0.90224 0.92162 0.88641 0.86900 0.82427 0.89759 0.80907 0.80904 0.75773 0.76884 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.73 71.98 0.70 -3.82 16 2 C 0.10 2.83 5.75 86.38 0.50 3.33 16 3 N -0.58 -19.80 2.47 -828.43 -2.05 -21.85 16 4 C 0.19 5.04 5.95 85.63 0.51 5.55 16 5 C -0.05 -1.55 6.88 24.83 0.17 -1.38 16 6 C -0.19 -4.30 9.33 22.19 0.21 -4.09 16 7 C -0.22 -4.82 10.91 22.19 0.24 -4.57 16 8 C -0.05 -1.32 12.09 66.97 0.81 -0.51 16 9 O -0.20 -6.63 10.65 -2.58 -0.03 -6.65 16 10 C 0.51 23.12 7.65 87.08 0.67 23.78 16 11 O -0.57 -28.15 16.10 -3.52 -0.06 -28.21 16 12 C 0.39 20.18 7.58 87.08 0.66 20.84 16 13 O -0.59 -30.22 11.36 -3.70 -0.04 -30.26 16 14 N -0.52 -28.72 5.24 -308.87 -1.62 -30.34 16 15 C -0.34 -19.17 9.67 84.35 0.82 -18.36 16 16 H 0.10 5.79 7.15 -2.91 -0.02 5.77 16 17 C -0.01 -0.39 5.51 85.14 0.47 0.08 16 18 N -0.90 -49.34 13.03 21.77 0.28 -49.05 16 19 Si 1.01 41.08 29.56 68.60 2.03 43.11 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H 0.02 0.77 7.00 -2.39 -0.02 0.76 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.61 6.57 -2.39 -0.02 1.60 16 26 H 0.10 3.44 5.40 -2.41 -0.01 3.43 16 27 H 0.11 2.17 7.82 -2.38 -0.02 2.15 16 28 H 0.16 2.59 7.85 -2.39 -0.02 2.57 16 29 H 0.08 2.52 7.48 -2.39 -0.02 2.50 16 30 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.23 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.40 22.71 7.36 -92.71 -0.68 22.02 16 34 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 Total: -1.00 -70.59 298.04 4.72 -65.87 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.46 Total: 36.53 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 5.75 Total: 20.86 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -3.39 Total: -101.24 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -0.13 Total: -65.13 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -70.59 4.72 -65.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042445927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.624 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds