Wall clock time and date at job start Mon Mar 30 2020 04:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34310 * 125.78880 * 2 1 4 4 C 1.34306 * 109.47416 * 180.23660 * 3 2 1 5 5 C 1.34511 * 108.42290 * 359.76447 * 4 3 2 6 6 C 1.34512 * 125.79314 * 179.83090 * 2 1 3 7 7 C 1.50699 * 126.57802 * 0.03825 * 6 2 1 8 8 N 1.46499 * 109.46967 * 79.71003 * 7 6 2 9 9 C 1.46501 * 120.00026 * 269.99769 * 8 7 6 10 10 C 1.34777 * 119.99830 * 90.00145 * 8 7 6 11 11 O 1.21440 * 120.00175 * 356.46696 * 10 8 7 12 12 C 1.48834 * 119.99971 * 176.46946 * 10 8 7 13 13 O 1.21503 * 119.99924 * 5.93046 * 12 10 8 14 14 N 1.34776 * 120.00118 * 185.93728 * 12 10 8 15 15 C 1.36120 * 120.00206 * 179.97438 * 14 12 10 16 16 H 1.08001 * 119.99776 * 359.97438 * 15 14 12 17 17 C 1.39582 * 120.00001 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00430 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99995 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46539 * 89.99848 * 19 17 15 21 21 H 1.48495 * 109.47479 * 210.00197 * 19 17 15 22 22 H 1.48500 * 109.47131 * 330.00850 * 19 17 15 23 23 H 1.09001 * 109.47616 * 270.16532 * 1 2 3 24 24 H 1.08994 * 109.47487 * 30.17124 * 1 2 3 25 25 H 1.09005 * 109.46625 * 150.16694 * 1 2 3 26 26 H 1.07996 * 125.78314 * 179.74857 * 4 3 2 27 27 H 1.07997 * 126.57853 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47184 * 199.71215 * 7 6 2 29 29 H 1.09001 * 109.46984 * 319.71005 * 7 6 2 30 30 H 1.08996 * 109.46708 * 95.97831 * 9 8 7 31 31 H 1.09002 * 109.47046 * 215.97182 * 9 8 7 32 32 H 1.08993 * 109.47213 * 335.97382 * 9 8 7 33 33 H 0.97003 * 120.00092 * 359.97438 * 14 12 10 34 34 H 0.96993 * 120.00691 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0895 0.0000 4 6 3.5814 0.7122 -0.0052 5 6 3.6309 -0.6320 -0.0034 6 6 2.2937 -1.0911 0.0032 7 6 1.8373 -2.5273 0.0067 8 7 1.4550 -2.9214 -1.3516 9 6 0.0740 -2.7399 -1.8056 10 6 2.3738 -3.4511 -2.1833 11 8 3.5320 -3.5424 -1.8297 12 6 1.9690 -3.9239 -3.5352 13 8 0.8357 -3.7352 -3.9307 14 7 2.8594 -4.5616 -4.3207 15 6 2.4890 -4.9946 -5.5569 16 1 1.4815 -4.8275 -5.9081 17 6 3.4114 -5.6545 -6.3706 18 7 4.6335 -5.8577 -5.9443 19 14 2.9029 -6.2493 -8.0668 20 1 3.1622 -5.1803 -9.0644 21 1 3.6868 -7.4593 -8.4227 22 1 1.4554 -6.5810 -8.0617 23 1 -0.3634 0.0030 1.0276 24 1 -0.3634 0.8884 -0.5164 25 1 -0.3633 -0.8915 -0.5113 26 1 4.4335 1.3757 -0.0103 27 1 4.5212 -1.2432 -0.0069 28 1 2.6491 -3.1657 0.3554 29 1 0.9798 -2.6344 0.6710 30 1 -0.0084 -1.7998 -2.3511 31 1 -0.2046 -3.5655 -2.4605 32 1 -0.5923 -2.7193 -0.9433 33 1 3.7642 -4.7121 -4.0051 34 1 5.2743 -6.3166 -6.5096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042449956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:08 Heat of formation + Delta-G solvation = -43.229004 kcal Electronic energy + Delta-G solvation = -20137.658102 eV Core-core repulsion = 16845.132346 eV Total energy + Delta-G solvation = -3292.525757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.48507 -39.63219 -37.28903 -35.71919 -34.24349 -32.91897 -31.80748 -31.38810 -28.43632 -26.43663 -25.77679 -25.11645 -22.28743 -21.24276 -19.84157 -18.78229 -18.02756 -17.02799 -16.56303 -16.20977 -15.81962 -15.17888 -14.93132 -14.29867 -14.14067 -13.92361 -13.54950 -13.24170 -13.04609 -12.86474 -12.59447 -12.43742 -12.18252 -12.03746 -11.81732 -11.60336 -11.21299 -11.09650 -10.50965 -10.41540 -10.19479 -9.71302 -9.63936 -8.42116 -8.31370 -8.21351 -7.88200 -6.67112 -3.99611 1.79416 2.45177 2.62871 3.09718 3.15021 3.16417 3.21444 3.51499 4.05401 4.26410 4.77298 4.82901 5.01449 5.02291 5.18304 5.25758 5.38742 5.50105 5.51983 5.67926 5.77296 5.91917 5.98995 6.11330 6.16436 6.30409 6.54098 6.65281 6.93572 7.23439 7.30889 7.66027 7.79508 8.32536 8.61296 8.95970 9.32019 9.85072 10.47721 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032281 B = 0.004573 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.180380 B = 6121.036397 C = 6466.513626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.004 4.004 3 O -0.180 6.180 4 C -0.057 4.057 5 C -0.184 4.184 6 C -0.192 4.192 7 C 0.184 3.816 8 N -0.596 5.596 9 C 0.071 3.929 10 C 0.514 3.486 11 O -0.543 6.543 12 C 0.395 3.605 13 O -0.590 6.590 14 N -0.498 5.498 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.869 5.869 19 Si 0.939 3.061 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.200 0.800 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.404 0.596 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 8.448 11.261 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 O -0.077 6.077 4 C -0.124 4.124 5 C -0.203 4.203 6 C -0.195 4.195 7 C 0.061 3.939 8 N -0.330 5.330 9 C -0.071 4.071 10 C 0.300 3.700 11 O -0.420 6.420 12 C 0.180 3.820 13 O -0.479 6.479 14 N -0.132 5.132 15 C -0.437 4.437 16 H 0.130 0.870 17 C -0.176 4.176 18 N -0.507 5.507 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.217 0.783 27 H 0.167 0.833 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.070 0.930 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.289 8.694 11.114 15.069 hybrid contribution 0.716 -0.323 -0.615 0.997 sum -4.573 8.370 10.499 14.185 Atomic orbital electron populations 1.20518 0.85369 1.04722 1.03292 1.22242 0.93828 0.83921 1.05539 1.83976 1.16947 1.34851 1.71895 1.23892 0.84108 0.96038 1.08340 1.21792 0.98019 0.94554 1.05939 1.20613 0.93247 0.96394 1.09235 1.19703 1.00725 0.89869 0.83570 1.47648 1.10920 1.61633 1.12781 1.22450 0.80199 1.05049 0.99426 1.20692 0.84926 0.77532 0.86801 1.90665 1.18416 1.56136 1.76750 1.18936 0.87188 0.89205 0.86686 1.90449 1.19525 1.63479 1.74485 1.41572 1.13063 1.44634 1.13948 1.19873 0.99578 1.33503 0.90698 0.86954 1.25582 0.94702 0.96456 1.00822 1.69481 1.03966 1.38815 1.38454 0.85726 0.79148 0.78258 0.80449 1.19922 1.20532 1.18890 0.90290 0.90619 0.88709 0.78298 0.83284 0.89148 0.89957 0.93143 0.86427 0.93017 0.76042 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.21 36.00 0.37 -0.47 16 2 C 0.00 -0.06 7.32 -35.63 -0.26 -0.32 16 3 O -0.18 -2.56 10.65 5.68 0.06 -2.50 16 4 C -0.06 -0.75 12.09 29.41 0.36 -0.39 16 5 C -0.18 -2.77 10.87 -39.70 -0.43 -3.20 16 6 C -0.19 -2.93 5.75 -104.74 -0.60 -3.53 16 7 C 0.18 2.75 5.47 -5.19 -0.03 2.72 16 8 N -0.60 -10.68 2.86 -183.70 -0.52 -11.20 16 9 C 0.07 1.11 7.97 59.85 0.48 1.59 16 10 C 0.51 11.47 7.71 -11.87 -0.09 11.37 16 11 O -0.54 -12.91 16.09 5.42 0.09 -12.82 16 12 C 0.40 9.92 7.70 -11.87 -0.09 9.83 16 13 O -0.59 -15.18 12.69 5.36 0.07 -15.12 16 14 N -0.50 -13.34 5.24 -11.59 -0.06 -13.40 16 15 C -0.31 -8.37 9.67 -15.15 -0.15 -8.52 16 16 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -23.31 13.03 55.53 0.72 -22.58 16 19 Si 0.94 20.00 29.56 -169.99 -5.02 14.97 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.95 4.38 -51.93 -0.23 0.72 16 26 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 28 H 0.09 1.42 7.47 -51.93 -0.39 1.03 16 29 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 30 H 0.05 0.81 7.77 -51.93 -0.40 0.40 16 31 H 0.12 2.18 5.35 -51.94 -0.28 1.90 16 32 H 0.05 0.60 6.84 -51.93 -0.36 0.24 16 33 H 0.40 10.97 7.36 -40.82 -0.30 10.67 16 34 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -31.47 296.58 -4.31 -35.78 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -3.56 Total: 12.61 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -0.55 Total: 9.79 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.14 Total: -47.19 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: 0.22 Total: -30.44 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.47 -4.31 -35.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042449956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.451 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds