Wall clock time and date at job start Mon Mar 30 2020 04:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34310 * 125.78880 * 2 1 4 4 C 1.34306 * 109.47416 * 180.23660 * 3 2 1 5 5 C 1.34511 * 108.42290 * 359.76447 * 4 3 2 6 6 C 1.34512 * 125.79314 * 179.83090 * 2 1 3 7 7 C 1.50699 * 126.57802 * 0.03825 * 6 2 1 8 8 N 1.46499 * 109.46967 * 79.71003 * 7 6 2 9 9 C 1.46501 * 120.00026 * 269.99769 * 8 7 6 10 10 C 1.34777 * 119.99830 * 90.00145 * 8 7 6 11 11 O 1.21440 * 120.00175 * 356.46696 * 10 8 7 12 12 C 1.48834 * 119.99971 * 176.46946 * 10 8 7 13 13 O 1.21503 * 119.99924 * 5.93046 * 12 10 8 14 14 N 1.34776 * 120.00118 * 185.93728 * 12 10 8 15 15 C 1.36120 * 120.00206 * 179.97438 * 14 12 10 16 16 H 1.08001 * 119.99776 * 359.97438 * 15 14 12 17 17 C 1.39582 * 120.00001 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00430 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99995 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46539 * 89.99848 * 19 17 15 21 21 H 1.48495 * 109.47479 * 210.00197 * 19 17 15 22 22 H 1.48500 * 109.47131 * 330.00850 * 19 17 15 23 23 H 1.09001 * 109.47616 * 270.16532 * 1 2 3 24 24 H 1.08994 * 109.47487 * 30.17124 * 1 2 3 25 25 H 1.09005 * 109.46625 * 150.16694 * 1 2 3 26 26 H 1.07996 * 125.78314 * 179.74857 * 4 3 2 27 27 H 1.07997 * 126.57853 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47184 * 199.71215 * 7 6 2 29 29 H 1.09001 * 109.46984 * 319.71005 * 7 6 2 30 30 H 1.08996 * 109.46708 * 95.97831 * 9 8 7 31 31 H 1.09002 * 109.47046 * 215.97182 * 9 8 7 32 32 H 1.08993 * 109.47213 * 335.97382 * 9 8 7 33 33 H 0.97003 * 120.00092 * 359.97438 * 14 12 10 34 34 H 0.96993 * 120.00691 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0895 0.0000 4 6 3.5814 0.7122 -0.0052 5 6 3.6309 -0.6320 -0.0034 6 6 2.2937 -1.0911 0.0032 7 6 1.8373 -2.5273 0.0067 8 7 1.4550 -2.9214 -1.3516 9 6 0.0740 -2.7399 -1.8056 10 6 2.3738 -3.4511 -2.1833 11 8 3.5320 -3.5424 -1.8297 12 6 1.9690 -3.9239 -3.5352 13 8 0.8357 -3.7352 -3.9307 14 7 2.8594 -4.5616 -4.3207 15 6 2.4890 -4.9946 -5.5569 16 1 1.4815 -4.8275 -5.9081 17 6 3.4114 -5.6545 -6.3706 18 7 4.6335 -5.8577 -5.9443 19 14 2.9029 -6.2493 -8.0668 20 1 3.1622 -5.1803 -9.0644 21 1 3.6868 -7.4593 -8.4227 22 1 1.4554 -6.5810 -8.0617 23 1 -0.3634 0.0030 1.0276 24 1 -0.3634 0.8884 -0.5164 25 1 -0.3633 -0.8915 -0.5113 26 1 4.4335 1.3757 -0.0103 27 1 4.5212 -1.2432 -0.0069 28 1 2.6491 -3.1657 0.3554 29 1 0.9798 -2.6344 0.6710 30 1 -0.0084 -1.7998 -2.3511 31 1 -0.2046 -3.5655 -2.4605 32 1 -0.5923 -2.7193 -0.9433 33 1 3.7642 -4.7121 -4.0051 34 1 5.2743 -6.3166 -6.5096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042449956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:07 Heat of formation + Delta-G solvation = -65.334059 kcal Electronic energy + Delta-G solvation = -20138.616650 eV Core-core repulsion = 16845.132346 eV Total energy + Delta-G solvation = -3293.484304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.55281 -41.39812 -39.16027 -37.30971 -36.11265 -34.20131 -33.40326 -32.74268 -29.62020 -28.18345 -27.04797 -26.60438 -23.97272 -22.36156 -21.23949 -20.48914 -19.81620 -18.40078 -18.02708 -17.69632 -17.19835 -16.86348 -16.62309 -15.85973 -15.65993 -15.39624 -14.83468 -14.79660 -14.44757 -14.03990 -13.75032 -13.69012 -13.65828 -13.49099 -13.15557 -12.96681 -12.81102 -12.53994 -12.27038 -12.09769 -11.96619 -11.62156 -10.80748 -10.26791 -9.96997 -9.75600 -9.24633 -8.64125 -6.08907 0.61436 0.76189 1.37489 1.44127 1.48143 1.57561 2.01213 2.12531 2.31178 2.37985 3.15517 3.17035 3.81833 3.86808 3.94661 4.01973 4.32375 4.41824 4.46223 4.61219 4.70738 4.79016 4.86929 4.90730 5.06130 5.17253 5.27368 5.35493 5.52774 5.57357 5.70428 6.08662 6.19081 6.35423 6.79728 6.99697 7.30342 7.82112 8.51832 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032281 B = 0.004573 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.180380 B = 6121.036397 C = 6466.513626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.001 4.001 3 O -0.187 6.187 4 C -0.048 4.048 5 C -0.218 4.218 6 C -0.221 4.221 7 C 0.184 3.816 8 N -0.581 5.581 9 C 0.069 3.931 10 C 0.512 3.488 11 O -0.566 6.566 12 C 0.392 3.608 13 O -0.599 6.599 14 N -0.515 5.515 15 C -0.343 4.343 16 H 0.101 0.899 17 C -0.006 4.006 18 N -0.900 5.900 19 Si 1.010 2.990 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.262 1.262 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.235 0.765 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 9.385 11.833 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 O -0.083 6.083 4 C -0.114 4.114 5 C -0.237 4.237 6 C -0.223 4.223 7 C 0.063 3.937 8 N -0.313 5.313 9 C -0.072 4.072 10 C 0.296 3.704 11 O -0.445 6.445 12 C 0.177 3.823 13 O -0.488 6.488 14 N -0.148 5.148 15 C -0.473 4.473 16 H 0.119 0.881 17 C -0.210 4.210 18 N -0.538 5.538 19 Si 0.831 3.169 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.186 1.186 23 H 0.126 0.874 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.251 0.749 27 H 0.157 0.843 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.232 0.768 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.798 9.652 11.719 16.635 hybrid contribution 1.120 -0.514 -0.653 1.394 sum -5.678 9.139 11.066 15.434 Atomic orbital electron populations 1.20703 0.82626 1.05281 1.05304 1.22889 0.95377 0.83268 1.03706 1.84005 1.17389 1.35167 1.71789 1.24509 0.84648 0.95927 1.06344 1.21948 0.98124 0.95729 1.07944 1.20692 0.93631 0.96734 1.11242 1.19946 1.02160 0.89695 0.81946 1.47750 1.10928 1.59392 1.13247 1.22495 0.79636 1.03642 1.01397 1.20238 0.85388 0.78426 0.86313 1.90652 1.19361 1.57539 1.76958 1.19588 0.86835 0.88129 0.87725 1.90449 1.19741 1.63374 1.75265 1.41680 1.13019 1.45788 1.14361 1.19978 0.99729 1.35810 0.91752 0.88126 1.26538 0.94355 0.95652 1.04456 1.69557 1.04917 1.39214 1.40074 0.84693 0.78910 0.78069 0.75232 1.19154 1.19253 1.18552 0.87441 0.89619 0.88489 0.74885 0.84325 0.90472 0.85630 0.93166 0.89264 0.87661 0.76758 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.21 71.24 0.73 -0.63 16 2 C 0.00 -0.03 7.32 24.83 0.18 0.15 16 3 O -0.19 -4.92 10.65 -2.58 -0.03 -4.94 16 4 C -0.05 -1.19 12.09 66.97 0.81 -0.38 16 5 C -0.22 -6.51 10.87 22.19 0.24 -6.27 16 6 C -0.22 -6.39 5.75 -19.94 -0.11 -6.50 16 7 C 0.18 5.16 5.47 85.63 0.47 5.62 16 8 N -0.58 -20.16 2.86 -853.44 -2.44 -22.60 16 9 C 0.07 2.04 7.97 127.77 1.02 3.05 16 10 C 0.51 23.13 7.71 87.08 0.67 23.80 16 11 O -0.57 -27.66 16.09 -3.53 -0.06 -27.72 16 12 C 0.39 20.22 7.70 87.08 0.67 20.89 16 13 O -0.60 -31.37 12.69 -3.73 -0.05 -31.42 16 14 N -0.51 -28.59 5.24 -308.87 -1.62 -30.21 16 15 C -0.34 -19.33 9.67 84.35 0.82 -18.51 16 16 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 17 C -0.01 -0.33 5.51 85.14 0.47 0.14 16 18 N -0.90 -49.01 13.03 21.76 0.28 -48.73 16 19 Si 1.01 40.93 29.56 68.60 2.03 42.96 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.10 1.53 4.38 -2.38 -0.01 1.52 16 26 H 0.23 3.74 8.06 -2.91 -0.02 3.72 16 27 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 28 H 0.08 2.39 7.47 -2.39 -0.02 2.37 16 29 H 0.13 2.41 7.85 -2.39 -0.02 2.39 16 30 H 0.05 1.50 7.77 -2.39 -0.02 1.48 16 31 H 0.09 3.22 5.35 -2.55 -0.01 3.21 16 32 H 0.11 1.97 6.84 -2.39 -0.02 1.96 16 33 H 0.40 22.62 7.36 -92.71 -0.68 21.94 16 34 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 Total: -1.00 -70.19 296.58 4.55 -65.65 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.47 Total: 35.65 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 5.96 Total: 21.36 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -3.77 Total: -101.54 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -0.13 Total: -64.08 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -70.19 4.55 -65.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042449956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.313 kcal (2) G-P(sol) polarization free energy of solvation -70.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds