Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00137 * 2 1 4 4 C 1.50704 * 109.47042 * 269.99992 * 3 2 1 5 5 C 1.39866 * 126.04018 * 90.02127 * 4 3 2 6 6 N 1.30842 * 108.20421 * 179.97438 * 5 4 3 7 7 N 1.40084 * 108.20086 * 0.02562 * 6 5 4 8 8 C 1.46498 * 126.03261 * 179.97438 * 7 6 5 9 9 C 1.34946 * 107.92669 * 359.75611 * 7 6 5 10 10 C 1.34777 * 120.00086 * 179.97438 * 2 1 3 11 11 O 1.21440 * 119.99993 * 183.59656 * 10 2 1 12 12 C 1.48827 * 120.00034 * 3.32397 * 10 2 1 13 13 O 1.21506 * 119.99626 * 354.45172 * 12 10 2 14 14 N 1.34780 * 120.00185 * 174.44962 * 12 10 2 15 15 C 1.36113 * 119.99783 * 180.02562 * 14 12 10 16 16 H 1.07998 * 120.00619 * 0.02562 * 15 14 12 17 17 C 1.39588 * 119.99856 * 180.02562 * 15 14 12 18 18 N 1.31017 * 119.99943 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00295 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.47117 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47509 * 119.99482 * 19 17 15 22 22 H 1.48498 * 109.47449 * 239.99972 * 19 17 15 23 23 H 1.09001 * 109.46788 * 263.96565 * 1 2 3 24 24 H 1.09003 * 109.47238 * 23.96155 * 1 2 3 25 25 H 1.08998 * 109.47140 * 143.96310 * 1 2 3 26 26 H 1.08997 * 109.46984 * 29.99598 * 3 2 1 27 27 H 1.09003 * 109.47551 * 150.00137 * 3 2 1 28 28 H 1.08004 * 125.89853 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47369 * 89.97775 * 8 7 6 30 30 H 1.09005 * 109.47430 * 209.97745 * 8 7 6 31 31 H 1.09005 * 109.47684 * 329.97467 * 8 7 6 32 32 H 1.08003 * 126.12359 * 180.23899 * 9 7 6 33 33 H 0.96999 * 119.99687 * 0.02562 * 14 12 10 34 34 H 0.97000 * 119.99882 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 6 1.6066 2.5071 -2.1966 6 7 2.1615 2.6666 -3.3707 7 7 3.3757 1.9682 -3.3794 8 6 4.3136 1.8843 -4.5016 9 6 3.5311 1.3903 -2.1699 10 6 2.1389 -1.1672 0.0005 11 8 3.3515 -1.1682 0.0665 12 6 1.3966 -2.4550 -0.0736 13 8 0.1823 -2.4595 -0.0329 14 7 2.0715 -3.6163 -0.1860 15 6 1.3925 -4.7941 -0.2543 16 1 0.3131 -4.7981 -0.2189 17 6 2.0914 -5.9968 -0.3701 18 7 3.4009 -5.9920 -0.4136 19 14 1.1598 -7.6131 -0.4646 20 1 -0.2998 -7.3479 -0.3958 21 1 1.4796 -8.2948 -1.7446 22 1 1.5587 -8.4816 0.6719 23 1 -0.3633 -0.1080 1.0220 24 1 -0.3634 0.9391 -0.4174 25 1 -0.3633 -0.8310 -0.6046 26 1 1.6084 2.0284 0.5138 27 1 3.1500 1.1384 0.5138 28 1 0.6619 2.9245 -1.8806 29 1 5.0310 2.7024 -4.4376 30 1 4.8436 0.9325 -4.4620 31 1 3.7643 1.9553 -5.4405 32 1 4.3684 0.7843 -1.8566 33 1 3.0409 -3.6127 -0.2181 34 1 3.8865 -6.8278 -0.4944 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042489293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = 24.464468 kcal Electronic energy + Delta-G solvation = -19932.598818 eV Core-core repulsion = 16675.301221 eV Total energy + Delta-G solvation = -3257.297597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15311 -39.53057 -37.21724 -35.46942 -34.11384 -33.13179 -31.41530 -30.76914 -27.88770 -26.39582 -25.99534 -24.80425 -22.10826 -21.01537 -20.19675 -18.88265 -18.06016 -16.83283 -16.51285 -15.96583 -15.39557 -15.11496 -14.93669 -14.39977 -14.15027 -13.92706 -13.51562 -13.13459 -12.87487 -12.73798 -12.62642 -12.23735 -12.22408 -11.91665 -11.74185 -11.45191 -11.20271 -10.55314 -10.45800 -10.40338 -10.15183 -9.71262 -9.36819 -8.59783 -8.26703 -8.14543 -7.87710 -6.66467 -3.98664 1.93433 2.45980 2.57187 2.72916 3.14141 3.16863 3.23736 3.60274 4.06950 4.28368 4.51139 4.86170 5.01100 5.03761 5.11030 5.18787 5.28959 5.37155 5.49468 5.69219 5.76682 5.89329 6.03374 6.21772 6.23012 6.62580 6.68128 7.00479 7.03428 7.32028 7.69522 7.73644 7.82844 8.34338 8.63398 8.97580 9.33589 9.86740 10.48585 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.004717 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.393231 B = 5934.390486 C = 6457.975750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.594 5.594 3 C 0.191 3.809 4 C -0.257 4.257 5 C 0.060 3.940 6 N -0.306 5.306 7 N -0.380 5.380 8 C 0.103 3.897 9 C 0.081 3.919 10 C 0.515 3.485 11 O -0.551 6.551 12 C 0.396 3.604 13 O -0.589 6.589 14 N -0.501 5.501 15 C -0.305 4.305 16 H 0.113 0.887 17 C 0.030 3.970 18 N -0.871 5.871 19 Si 0.937 3.063 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.277 1.277 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.181 0.819 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.177 0.823 33 H 0.404 0.596 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 13.305 -3.401 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.327 5.327 3 C 0.068 3.932 4 C -0.269 4.269 5 C -0.127 4.127 6 N -0.127 5.127 7 N -0.162 5.162 8 C -0.039 4.039 9 C -0.066 4.066 10 C 0.301 3.699 11 O -0.429 6.429 12 C 0.181 3.819 13 O -0.478 6.478 14 N -0.135 5.135 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.509 5.509 19 Si 0.763 3.237 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.203 1.203 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.131 0.869 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.198 0.802 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.194 0.806 33 H 0.239 0.761 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.062 13.675 -4.639 14.480 hybrid contribution 0.325 -1.137 0.654 1.352 sum 1.386 12.538 -3.985 13.229 Atomic orbital electron populations 1.22294 0.78225 1.03260 1.02925 1.47704 1.07850 1.04669 1.72512 1.19597 0.98039 0.84705 0.90900 1.20468 0.97298 1.09066 1.00085 1.23748 0.99718 0.98230 0.90957 1.77292 0.95260 1.18550 1.21570 1.48472 1.16817 1.39598 1.11271 1.21838 0.91110 1.03175 0.87778 1.22534 1.00738 0.97798 0.85522 1.20642 0.87284 0.85762 0.76222 1.90639 1.14199 1.87827 1.50189 1.19009 0.87868 0.84411 0.90648 1.90463 1.13021 1.85724 1.58549 1.41573 1.10456 1.04535 1.56937 1.19917 0.94044 0.82246 1.47351 0.86948 1.25568 0.95602 1.00419 0.96009 1.69491 1.06522 1.29378 1.45522 0.85686 0.79894 0.80110 0.78036 1.18716 1.20358 1.20307 0.93123 0.93178 0.86948 0.89921 0.89444 0.80230 0.90922 0.89365 0.89440 0.80625 0.76100 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 9.53 59.84 0.57 1.79 16 2 N -0.59 -10.50 2.86 -183.70 -0.52 -11.02 16 3 C 0.19 2.71 5.89 -5.19 -0.03 2.68 16 4 C -0.26 -3.68 5.68 -105.05 -0.60 -4.28 16 5 C 0.06 0.81 11.96 -17.36 -0.21 0.61 16 6 N -0.31 -4.54 12.58 30.63 0.39 -4.15 16 7 N -0.38 -5.14 4.01 -68.16 -0.27 -5.41 16 8 C 0.10 0.92 11.47 59.85 0.69 1.61 16 9 C 0.08 1.16 11.40 -17.23 -0.20 0.96 16 10 C 0.51 11.20 7.71 -11.88 -0.09 11.11 16 11 O -0.55 -12.51 16.04 5.42 0.09 -12.42 16 12 C 0.40 9.89 7.70 -11.88 -0.09 9.80 16 13 O -0.59 -15.24 12.69 5.36 0.07 -15.17 16 14 N -0.50 -13.31 5.24 -11.59 -0.06 -13.37 16 15 C -0.30 -8.34 9.67 -15.15 -0.15 -8.48 16 16 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 17 C 0.03 0.79 5.51 -17.40 -0.10 0.69 16 18 N -0.87 -23.22 13.03 55.53 0.72 -22.50 16 19 Si 0.94 20.00 29.56 -169.99 -5.02 14.97 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.63 8.03 -51.93 -0.42 0.22 16 25 H 0.11 2.18 5.36 -51.94 -0.28 1.90 16 26 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.09 1.29 7.37 -51.93 -0.38 0.90 16 28 H 0.18 1.87 8.06 -52.48 -0.42 1.44 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.18 2.37 8.06 -52.48 -0.42 1.94 16 33 H 0.40 10.82 7.36 -40.82 -0.30 10.52 16 34 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -32.17 304.19 -4.08 -36.25 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -3.84 Total: 11.76 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: -0.20 Total: 16.49 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.25 Total: -56.46 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.15 Total: -27.60 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.17 -4.08 -36.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042489293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.717 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds