Wall clock time and date at job start Mon Mar 30 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00137 * 2 1 4 4 C 1.50704 * 109.47042 * 269.99992 * 3 2 1 5 5 C 1.39866 * 126.04018 * 90.02127 * 4 3 2 6 6 N 1.30842 * 108.20421 * 179.97438 * 5 4 3 7 7 N 1.40084 * 108.20086 * 0.02562 * 6 5 4 8 8 C 1.46498 * 126.03261 * 179.97438 * 7 6 5 9 9 C 1.34946 * 107.92669 * 359.75611 * 7 6 5 10 10 C 1.34777 * 120.00086 * 179.97438 * 2 1 3 11 11 O 1.21440 * 119.99993 * 183.59656 * 10 2 1 12 12 C 1.48827 * 120.00034 * 3.32397 * 10 2 1 13 13 O 1.21506 * 119.99626 * 354.45172 * 12 10 2 14 14 N 1.34780 * 120.00185 * 174.44962 * 12 10 2 15 15 C 1.36113 * 119.99783 * 180.02562 * 14 12 10 16 16 H 1.07998 * 120.00619 * 0.02562 * 15 14 12 17 17 C 1.39588 * 119.99856 * 180.02562 * 15 14 12 18 18 N 1.31017 * 119.99943 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00295 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.47117 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47509 * 119.99482 * 19 17 15 22 22 H 1.48498 * 109.47449 * 239.99972 * 19 17 15 23 23 H 1.09001 * 109.46788 * 263.96565 * 1 2 3 24 24 H 1.09003 * 109.47238 * 23.96155 * 1 2 3 25 25 H 1.08998 * 109.47140 * 143.96310 * 1 2 3 26 26 H 1.08997 * 109.46984 * 29.99598 * 3 2 1 27 27 H 1.09003 * 109.47551 * 150.00137 * 3 2 1 28 28 H 1.08004 * 125.89853 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47369 * 89.97775 * 8 7 6 30 30 H 1.09005 * 109.47430 * 209.97745 * 8 7 6 31 31 H 1.09005 * 109.47684 * 329.97467 * 8 7 6 32 32 H 1.08003 * 126.12359 * 180.23899 * 9 7 6 33 33 H 0.96999 * 119.99687 * 0.02562 * 14 12 10 34 34 H 0.97000 * 119.99882 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 6 1.6066 2.5071 -2.1966 6 7 2.1615 2.6666 -3.3707 7 7 3.3757 1.9682 -3.3794 8 6 4.3136 1.8843 -4.5016 9 6 3.5311 1.3903 -2.1699 10 6 2.1389 -1.1672 0.0005 11 8 3.3515 -1.1682 0.0665 12 6 1.3966 -2.4550 -0.0736 13 8 0.1823 -2.4595 -0.0329 14 7 2.0715 -3.6163 -0.1860 15 6 1.3925 -4.7941 -0.2543 16 1 0.3131 -4.7981 -0.2189 17 6 2.0914 -5.9968 -0.3701 18 7 3.4009 -5.9920 -0.4136 19 14 1.1598 -7.6131 -0.4646 20 1 -0.2998 -7.3479 -0.3958 21 1 1.4796 -8.2948 -1.7446 22 1 1.5587 -8.4816 0.6719 23 1 -0.3633 -0.1080 1.0220 24 1 -0.3634 0.9391 -0.4174 25 1 -0.3633 -0.8310 -0.6046 26 1 1.6084 2.0284 0.5138 27 1 3.1500 1.1384 0.5138 28 1 0.6619 2.9245 -1.8806 29 1 5.0310 2.7024 -4.4376 30 1 4.8436 0.9325 -4.4620 31 1 3.7643 1.9553 -5.4405 32 1 4.3684 0.7843 -1.8566 33 1 3.0409 -3.6127 -0.2181 34 1 3.8865 -6.8278 -0.4944 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042489293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:16 Heat of formation + Delta-G solvation = 1.238469 kcal Electronic energy + Delta-G solvation = -19933.605973 eV Core-core repulsion = 16675.301221 eV Total energy + Delta-G solvation = -3258.304752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21887 -41.24882 -39.06892 -37.07714 -35.95102 -34.15230 -33.39909 -31.93409 -28.94750 -28.05163 -27.39702 -26.27179 -23.74070 -22.02190 -21.42248 -20.64462 -19.91889 -18.27719 -17.97189 -17.49670 -16.86899 -16.70262 -16.31032 -15.80409 -15.61475 -15.40172 -14.96699 -14.73271 -14.13081 -13.98365 -13.75593 -13.64504 -13.50166 -13.25703 -13.17741 -12.95219 -12.66042 -12.51139 -12.07655 -11.92696 -11.62778 -11.60677 -10.39779 -10.23806 -10.04377 -9.60262 -9.38873 -8.62691 -6.06929 0.67517 0.88038 1.41444 1.46171 1.53426 1.60700 1.66176 2.12273 2.35536 2.42076 3.18693 3.21951 3.62092 3.93496 4.03958 4.25281 4.31239 4.39169 4.47168 4.48242 4.63195 4.71868 4.82187 4.95748 5.14081 5.22130 5.31029 5.59630 5.69375 5.73838 6.04979 6.19256 6.39107 6.69822 6.83922 7.04431 7.34327 7.85989 8.53489 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.004717 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.393231 B = 5934.390486 C = 6457.975750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.580 5.580 3 C 0.191 3.809 4 C -0.271 4.271 5 C 0.062 3.938 6 N -0.332 5.332 7 N -0.383 5.383 8 C 0.093 3.907 9 C 0.069 3.931 10 C 0.514 3.486 11 O -0.566 6.566 12 C 0.392 3.608 13 O -0.601 6.601 14 N -0.517 5.517 15 C -0.342 4.342 16 H 0.098 0.902 17 C -0.006 4.006 18 N -0.900 5.900 19 Si 1.007 2.993 20 H -0.264 1.264 21 H -0.267 1.267 22 H -0.267 1.267 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.211 0.789 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.399 0.601 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 14.245 -3.536 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.311 5.311 3 C 0.069 3.931 4 C -0.283 4.283 5 C -0.124 4.124 6 N -0.153 5.153 7 N -0.165 5.165 8 C -0.047 4.047 9 C -0.080 4.080 10 C 0.298 3.702 11 O -0.446 6.446 12 C 0.177 3.823 13 O -0.490 6.490 14 N -0.151 5.151 15 C -0.472 4.472 16 H 0.116 0.884 17 C -0.209 4.209 18 N -0.538 5.538 19 Si 0.829 3.171 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.192 1.192 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.097 0.903 26 H 0.142 0.858 27 H 0.099 0.901 28 H 0.227 0.773 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.195 0.805 33 H 0.233 0.767 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.515 14.662 -4.790 15.433 hybrid contribution 0.492 -1.270 0.664 1.516 sum 1.007 13.391 -4.126 14.048 Atomic orbital electron populations 1.22284 0.77131 1.04288 1.02970 1.47827 1.08646 1.04576 1.70093 1.19876 0.98191 0.83526 0.91465 1.20536 0.97763 1.09844 1.00169 1.24227 1.00470 0.97509 0.90218 1.77252 0.96085 1.19497 1.22478 1.48816 1.16928 1.38903 1.11827 1.22160 0.91011 1.04747 0.86814 1.22738 1.01112 0.97916 0.86203 1.20095 0.86970 0.85910 0.77194 1.90630 1.14501 1.88018 1.51419 1.19754 0.88042 0.85428 0.89102 1.90465 1.13710 1.86471 1.58399 1.41666 1.10145 1.05095 1.58166 1.19975 0.93674 0.83471 1.50101 0.88401 1.26482 0.96449 1.03329 0.94671 1.69557 1.07787 1.30739 1.45702 0.84675 0.78326 0.75537 0.78595 1.18772 1.19244 1.19182 0.92506 0.88668 0.90295 0.85847 0.90063 0.77261 0.88873 0.88187 0.88849 0.80538 0.76679 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.27 9.53 127.77 1.22 3.48 16 2 N -0.58 -19.53 2.86 -853.43 -2.44 -21.96 16 3 C 0.19 4.94 5.89 85.63 0.50 5.44 16 4 C -0.27 -7.19 5.68 -20.14 -0.11 -7.31 16 5 C 0.06 1.51 11.96 85.23 1.02 2.53 16 6 N -0.33 -9.25 12.58 -57.02 -0.72 -9.96 16 7 N -0.38 -9.85 4.01 -369.56 -1.48 -11.33 16 8 C 0.09 1.54 11.47 127.77 1.47 3.00 16 9 C 0.07 1.88 11.40 83.54 0.95 2.84 16 10 C 0.51 22.34 7.71 87.08 0.67 23.01 16 11 O -0.57 -25.86 16.04 -3.53 -0.06 -25.92 16 12 C 0.39 19.97 7.70 87.08 0.67 20.64 16 13 O -0.60 -31.70 12.69 -3.73 -0.05 -31.75 16 14 N -0.52 -28.33 5.24 -308.87 -1.62 -29.95 16 15 C -0.34 -19.25 9.67 84.36 0.82 -18.43 16 16 H 0.10 5.65 7.15 -2.91 -0.02 5.63 16 17 C -0.01 -0.30 5.51 85.14 0.47 0.17 16 18 N -0.90 -48.48 13.03 21.77 0.28 -48.20 16 19 Si 1.01 40.92 29.56 68.60 2.03 42.95 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 22 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.09 2.03 8.03 -2.39 -0.02 2.01 16 25 H 0.08 3.01 5.36 -2.52 -0.01 2.99 16 26 H 0.12 2.22 8.07 -2.39 -0.02 2.20 16 27 H 0.08 2.24 7.37 -2.39 -0.02 2.23 16 28 H 0.21 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.18 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.40 22.17 7.36 -92.71 -0.68 21.49 16 34 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 Total: -1.00 -70.35 304.19 4.08 -66.27 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.45 Total: 34.47 kcal Atomic # 6 Polarization: 27.71 SS G_CDS: 7.67 Total: 35.38 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -5.97 Total: -121.40 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -0.10 Total: -57.67 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -70.35 4.08 -66.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042489293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.508 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds