Wall clock time and date at job start Mon Mar 30 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46876 * 2 1 4 4 N 1.46502 * 109.47392 * 119.99574 * 2 1 3 5 5 C 1.46499 * 119.99658 * 120.00091 * 4 2 1 6 6 C 1.50701 * 109.46992 * 90.00121 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 C 1.38408 * 120.00022 * 300.00133 * 4 2 1 15 15 N 1.32490 * 119.21724 * 359.73337 * 14 4 2 16 16 C 1.32276 * 120.73777 * 179.71517 * 15 14 4 17 17 C 1.38604 * 119.19677 * 0.54364 * 16 15 14 18 18 N 1.48008 * 120.71775 * 179.70901 * 17 16 15 19 19 O 1.21806 * 119.99641 * 180.02562 * 18 17 16 20 20 O 1.21799 * 120.00280 * 0.02562 * 18 17 16 21 21 C 1.38597 * 118.55892 * 359.72988 * 17 16 15 22 22 N 1.32278 * 119.19918 * 359.97438 * 21 17 16 23 23 H 1.09010 * 109.47195 * 299.99831 * 1 2 3 24 24 H 1.08993 * 109.47463 * 60.00313 * 1 2 3 25 25 H 1.09006 * 109.46650 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47060 * 240.00302 * 2 1 3 27 27 H 1.08997 * 109.46873 * 180.02562 * 3 2 1 28 28 H 1.09010 * 109.46695 * 300.00249 * 3 2 1 29 29 H 1.09000 * 109.47434 * 59.99662 * 3 2 1 30 30 H 1.09002 * 109.47391 * 330.00112 * 5 4 2 31 31 H 1.09001 * 109.46813 * 210.00168 * 5 4 2 32 32 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 33 33 H 1.08008 * 120.40095 * 180.27552 * 16 15 14 34 34 H 1.07998 * 120.40321 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8607 -1.8816 1.0618 6 6 4.3096 -1.4696 1.0156 7 1 4.5763 -0.4251 1.0804 8 6 5.2947 -2.4263 0.8917 9 7 4.9699 -3.6983 0.8133 10 14 7.0906 -1.9157 0.8352 11 1 7.1887 -0.4378 0.9417 12 1 7.8193 -2.5425 1.9673 13 1 7.6917 -2.3610 -0.4476 14 6 1.6841 -0.2176 2.4533 15 7 0.9258 0.8640 2.5568 16 6 0.5835 1.3387 3.7430 17 6 1.0373 0.6970 4.8847 18 7 0.6801 1.2030 6.2289 19 8 1.0866 0.6291 7.2235 20 8 -0.0202 2.1932 6.3407 21 6 1.8332 -0.4284 4.7402 22 7 2.1338 -0.8545 3.5245 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 2.6029 -2.4071 0.1422 31 1 2.6972 -2.5403 1.9147 32 1 5.6629 -4.3713 0.7258 33 1 -0.0385 2.2182 3.8210 34 1 2.2035 -0.9513 5.6096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530860.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:16 Heat of formation + Delta-G solvation = 46.492044 kcal Electronic energy + Delta-G solvation = -20308.568430 eV Core-core repulsion = 17052.226021 eV Total energy + Delta-G solvation = -3256.342409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 4.31 seconds Orbital eigenvalues (eV) -43.25329 -42.15580 -38.83916 -37.56813 -35.52187 -34.84799 -33.80921 -32.42078 -29.25805 -28.05457 -27.23266 -26.04588 -24.83886 -23.83738 -21.98025 -20.37879 -20.02838 -18.79341 -18.55758 -18.47934 -18.15099 -16.77629 -16.44045 -16.03430 -15.97670 -14.88505 -14.81083 -14.64227 -14.11192 -13.83591 -13.52933 -13.18708 -13.10381 -12.86340 -12.62646 -12.61285 -12.47925 -12.24266 -12.19973 -12.17298 -12.06247 -11.80230 -11.55524 -11.44889 -10.68728 -10.33980 -9.21105 -8.26427 -6.41239 -1.13837 -0.12988 0.33399 0.41598 1.34133 1.36904 1.45949 1.59785 2.33043 2.48509 2.81850 3.03962 3.09222 3.27094 3.43486 3.93317 4.18031 4.27881 4.36185 4.51475 4.76669 4.81773 4.90673 4.97636 4.99794 5.11933 5.26392 5.34665 5.39468 5.50174 5.61875 5.80200 5.95117 6.27140 6.63504 6.65035 6.95671 7.28623 8.79084 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.006237 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.978634 B = 4488.259676 C = 5455.524405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 C -0.157 4.157 4 N -0.533 5.533 5 C 0.264 3.736 6 C -0.535 4.535 7 H 0.048 0.952 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.273 1.273 14 C 0.582 3.418 15 N -0.549 5.549 16 C 0.273 3.727 17 C -0.248 4.248 18 N 0.064 4.936 19 O -0.203 6.203 20 O -0.170 6.170 21 C 0.269 3.731 22 N -0.571 5.571 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.223 0.777 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 9.317 0.823 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 C -0.215 4.215 4 N -0.237 5.237 5 C 0.143 3.857 6 C -0.574 4.574 7 H 0.066 0.934 8 C -0.180 4.180 9 N -0.560 5.560 10 Si 0.784 3.216 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.198 1.198 14 C 0.228 3.772 15 N -0.274 5.274 16 C 0.099 3.901 17 C -0.345 4.345 18 N 0.575 4.425 19 O -0.409 6.409 20 O -0.385 6.385 21 C 0.095 3.905 22 N -0.294 5.294 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.365 8.361 -1.128 11.881 hybrid contribution 0.978 0.067 1.216 1.562 sum -7.387 8.428 0.087 11.207 Atomic orbital electron populations 1.22198 0.92780 1.01826 1.04638 1.21413 0.95703 0.93932 0.85240 1.22172 0.99894 0.95057 1.04366 1.47619 1.46694 1.28197 1.01223 1.19154 0.88163 0.81236 0.97157 1.21506 0.91714 0.93034 1.51147 0.93374 1.25634 1.03181 0.94715 0.94460 1.70010 1.34960 1.00842 1.50179 0.85497 0.79827 0.78211 0.78037 1.19805 1.20550 1.19798 1.19967 0.84729 0.85165 0.87304 1.68620 1.19678 1.13946 1.25137 1.23498 0.87809 0.95214 0.83554 1.22477 1.19551 1.08107 0.84332 1.43125 0.97783 0.99180 1.02443 1.94534 1.58045 1.60096 1.28188 1.94476 1.34914 1.15754 1.93339 1.23242 0.84048 0.87662 0.95570 1.68552 1.28150 1.34692 0.98043 0.90420 0.88803 0.93906 0.89314 0.94927 0.88953 0.90461 0.95263 0.95287 0.92252 0.76066 0.78274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.13 71.98 0.66 -3.20 16 2 C 0.14 4.31 3.28 44.99 0.15 4.45 16 3 C -0.16 -4.35 9.13 71.98 0.66 -3.70 16 4 N -0.53 -20.75 2.49 -691.11 -1.72 -22.47 16 5 C 0.26 12.65 5.13 85.63 0.44 13.09 16 6 C -0.54 -28.08 9.39 25.60 0.24 -27.84 16 7 H 0.05 2.58 7.81 -2.91 -0.02 2.55 16 8 C 0.02 1.08 5.46 84.66 0.46 1.54 16 9 N -0.92 -51.47 13.29 21.45 0.28 -51.18 16 10 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 14 C 0.58 21.41 7.62 261.49 1.99 23.40 16 15 N -0.55 -16.20 5.44 -197.98 -1.08 -17.28 16 16 C 0.27 6.78 10.82 84.71 0.92 7.70 16 17 C -0.25 -6.96 6.89 36.55 0.25 -6.71 16 18 N 0.06 1.85 4.45 -46.06 -0.21 1.64 16 19 O -0.20 -6.31 18.54 18.88 0.35 -5.96 16 20 O -0.17 -4.78 18.54 18.89 0.35 -4.43 16 21 C 0.27 8.43 10.82 84.71 0.92 9.34 16 22 N -0.57 -22.06 9.11 -197.99 -1.80 -23.87 16 23 H 0.08 1.95 5.94 -2.38 -0.01 1.94 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.09 2.82 7.79 -2.39 -0.02 2.80 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.94 8.14 -2.38 -0.02 1.93 16 29 H 0.08 2.15 5.92 -2.39 -0.01 2.13 16 30 H 0.03 1.46 7.92 -2.39 -0.02 1.44 16 31 H 0.03 1.54 7.33 -2.39 -0.02 1.53 16 32 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.22 3.73 7.70 -2.91 -0.02 3.71 16 34 H 0.20 5.36 7.70 -2.91 -0.02 5.34 16 Total: -1.00 -60.13 299.37 6.01 -54.12 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.12 Total: 6.89 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.68 Total: 18.08 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -4.52 Total: -113.16 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.70 Total: -10.39 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -60.13 6.01 -54.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530860.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.612 kcal (2) G-P(sol) polarization free energy of solvation -60.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.31 seconds