Wall clock time and date at job start Mon Mar 30 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47188 * 2 1 4 4 C 1.53000 * 109.46851 * 120.00076 * 2 1 3 5 5 N 1.46503 * 109.47420 * 184.99805 * 4 2 1 6 6 C 1.34940 * 126.03757 * 124.99460 * 5 4 2 7 7 C 1.35317 * 107.74438 * 179.77616 * 6 5 4 8 8 C 1.39872 * 107.92021 * 0.23195 * 7 6 5 9 9 N 1.30838 * 108.20312 * 359.97438 * 8 7 6 10 10 N 1.46501 * 109.47223 * 239.99882 * 2 1 3 11 11 C 1.34773 * 119.99599 * 85.00185 * 10 2 1 12 12 O 1.21441 * 120.00547 * 0.02562 * 11 10 2 13 13 C 1.48830 * 119.99861 * 180.02562 * 11 10 2 14 14 O 1.21498 * 119.99963 * 0.02562 * 13 11 10 15 15 N 1.34779 * 120.00202 * 180.02562 * 13 11 10 16 16 C 1.36121 * 120.00247 * 180.02562 * 15 13 11 17 17 H 1.07995 * 119.99943 * 0.02562 * 16 15 13 18 18 C 1.39585 * 119.99908 * 179.97438 * 16 15 13 19 19 N 1.31017 * 119.99620 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00242 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47484 * 89.99345 * 20 18 16 22 22 H 1.48504 * 109.47118 * 209.99908 * 20 18 16 23 23 H 1.48499 * 109.46645 * 329.99101 * 20 18 16 24 24 H 1.08998 * 109.47188 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46919 * 300.00353 * 1 2 3 26 26 H 1.09004 * 109.46838 * 59.99823 * 1 2 3 27 27 H 1.09005 * 109.47317 * 65.00027 * 4 2 1 28 28 H 1.08999 * 109.47532 * 305.00330 * 4 2 1 29 29 H 1.08002 * 126.13053 * 0.04913 * 6 5 4 30 30 H 1.08003 * 126.04109 * 180.21059 * 7 6 5 31 31 H 1.08001 * 125.89461 * 180.02562 * 8 7 6 32 32 H 0.96998 * 119.99962 * 265.00815 * 10 2 1 33 33 H 0.97002 * 119.99610 * 359.97438 * 15 13 11 34 34 H 0.97007 * 119.99530 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.6180 1.3111 6 6 4.2185 -0.1324 2.3449 7 6 5.5275 -0.2137 2.0117 8 6 5.6115 -0.7631 0.7282 9 7 4.3967 -1.0035 0.3061 10 7 2.0184 -0.6906 -1.1962 11 6 2.1471 -0.0182 -2.3570 12 8 1.8588 1.1602 -2.4115 13 6 2.6427 -0.7199 -3.5724 14 8 2.9307 -1.8990 -3.5181 15 7 2.7719 -0.0474 -4.7333 16 6 3.2247 -0.6893 -5.8449 17 1 3.4800 -1.7376 -5.7969 18 6 3.3580 0.0071 -7.0473 19 7 3.7943 -0.6107 -8.1172 20 14 2.9158 1.8201 -7.1306 21 1 4.1141 2.6371 -6.8118 22 1 2.4403 2.1513 -8.4979 23 1 1.8412 2.1130 -6.1485 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7516 -1.7716 1.2056 28 1 1.6053 -0.2619 2.1370 29 1 3.8204 0.2485 3.2738 30 1 6.3602 0.0920 2.6279 31 1 6.5221 -0.9563 0.1805 32 1 2.2490 -1.6318 -1.1526 33 1 2.5416 0.8938 -4.7767 34 1 3.8866 -0.1268 -8.9528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042542615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:48 Heat of formation + Delta-G solvation = 14.367808 kcal Electronic energy + Delta-G solvation = -19983.027745 eV Core-core repulsion = 16725.292325 eV Total energy + Delta-G solvation = -3257.735421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -41.14111 -39.63793 -37.55945 -36.02561 -34.23933 -32.62298 -31.80244 -30.51846 -29.95305 -26.47784 -25.96797 -23.34283 -21.40271 -21.05041 -20.53388 -19.42935 -18.91397 -17.42827 -16.79043 -16.37843 -15.44842 -14.92040 -14.74839 -14.56206 -14.34093 -13.84421 -13.44780 -13.27264 -13.07263 -12.83095 -12.76061 -12.48542 -12.37807 -12.23347 -12.01365 -11.31853 -11.22897 -10.68412 -10.55627 -10.47495 -10.04178 -9.70656 -9.43191 -8.82351 -8.59397 -8.34948 -8.34016 -6.52449 -3.93740 1.90737 2.37445 2.46823 2.90859 3.08106 3.10908 3.14023 3.29367 4.00774 4.21101 4.23968 4.58866 4.71436 4.83494 4.88138 5.09542 5.13648 5.20516 5.31062 5.49344 5.56471 5.72761 5.74701 5.88844 5.99970 6.08518 6.65903 6.73641 6.97043 7.33083 7.72147 7.77487 7.99179 8.32240 8.58666 8.82055 9.26449 9.69423 10.58048 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.005054 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.067021 B = 5538.644907 C = 6000.063436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 H 0.092 0.908 4 C 0.125 3.875 5 N -0.376 5.376 6 C 0.045 3.955 7 C -0.275 4.275 8 C 0.041 3.959 9 N -0.269 5.269 10 N -0.693 5.693 11 C 0.520 3.480 12 O -0.556 6.556 13 C 0.410 3.590 14 O -0.573 6.573 15 N -0.532 5.532 16 C -0.307 4.307 17 H 0.127 0.873 18 C 0.052 3.948 19 N -0.853 5.853 20 Si 0.875 3.125 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.260 1.260 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.170 0.830 30 H 0.144 0.856 31 H 0.182 0.818 32 H 0.414 0.586 33 H 0.383 0.617 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 3.002 20.721 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 H 0.110 0.890 4 C 0.003 3.997 5 N -0.158 5.158 6 C -0.100 4.100 7 C -0.304 4.304 8 C -0.146 4.146 9 N -0.090 5.090 10 N -0.347 5.347 11 C 0.305 3.695 12 O -0.435 6.435 13 C 0.195 3.805 14 O -0.458 6.458 15 N -0.169 5.169 16 C -0.437 4.437 17 H 0.144 0.856 18 C -0.156 4.156 19 N -0.491 5.491 20 Si 0.700 3.300 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.185 1.185 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.187 0.813 30 H 0.162 0.838 31 H 0.198 0.802 32 H 0.251 0.749 33 H 0.217 0.783 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.950 2.604 19.537 20.101 hybrid contribution 0.383 1.338 0.544 1.494 sum -3.567 3.942 20.080 20.772 Atomic orbital electron populations 1.22162 0.93984 1.02804 1.03221 1.21164 0.94461 0.97962 0.83874 0.89023 1.22111 0.75008 1.02948 0.99595 1.48756 1.06275 1.48532 1.12276 1.22516 0.92557 1.00752 0.94207 1.21495 0.96211 1.13757 0.98959 1.23986 0.96254 0.99130 0.95254 1.77627 0.99251 1.21382 1.10708 1.45524 1.66293 1.14914 1.07952 1.20566 0.77339 0.86507 0.85119 1.90657 1.50915 1.16200 1.85687 1.18837 0.89726 0.87923 0.84045 1.90626 1.55641 1.15243 1.84335 1.41815 1.54549 1.11818 1.08732 1.19544 1.40132 0.98716 0.85285 0.85565 1.25204 0.96400 0.99030 0.94930 1.69448 1.41522 1.37312 1.00774 0.86691 0.80027 0.84268 0.79028 1.18980 1.19602 1.18533 0.91842 0.91498 0.90957 0.89010 0.87232 0.81265 0.83804 0.80150 0.74905 0.78280 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 2 C 0.13 1.65 2.79 -67.93 -0.19 1.46 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 C 0.13 1.16 6.04 -4.04 -0.02 1.13 16 5 N -0.38 -4.58 3.68 -61.36 -0.23 -4.81 16 6 C 0.05 0.45 11.45 -17.23 -0.20 0.26 16 7 C -0.27 -3.02 10.80 -40.01 -0.43 -3.45 16 8 C 0.04 0.55 12.03 -17.36 -0.21 0.34 16 9 N -0.27 -4.26 11.33 30.63 0.35 -3.91 16 10 N -0.69 -11.76 4.03 -54.43 -0.22 -11.98 16 11 C 0.52 11.17 7.83 -11.88 -0.09 11.08 16 12 O -0.56 -12.57 16.13 5.42 0.09 -12.49 16 13 C 0.41 10.38 7.82 -11.87 -0.09 10.29 16 14 O -0.57 -15.76 16.03 5.37 0.09 -15.67 16 15 N -0.53 -13.95 5.06 -11.59 -0.06 -14.01 16 16 C -0.31 -8.84 10.16 -15.15 -0.15 -8.99 16 17 H 0.13 4.03 7.36 -52.49 -0.39 3.65 16 18 C 0.05 1.43 5.51 -17.40 -0.10 1.33 16 19 N -0.85 -24.28 13.94 55.53 0.77 -23.51 16 20 Si 0.88 19.94 27.74 -169.99 -4.72 15.23 16 21 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.26 -5.77 6.53 56.52 0.37 -5.40 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.11 0.58 8.07 -51.93 -0.42 0.16 16 29 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.41 7.11 7.91 -40.82 -0.32 6.79 16 33 H 0.38 9.48 5.22 -40.82 -0.21 9.26 16 34 H 0.28 7.28 8.30 -40.82 -0.34 6.94 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -34.76 303.77 -4.34 -39.11 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -3.86 Total: 15.33 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -1.14 Total: 12.13 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.62 Total: -58.21 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: 0.17 Total: -28.16 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.72 Total: 15.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.76 -4.34 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042542615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.475 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.11 seconds