Wall clock time and date at job start Mon Mar 30 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47188 * 2 1 4 4 C 1.53000 * 109.46851 * 120.00076 * 2 1 3 5 5 N 1.46503 * 109.47420 * 184.99805 * 4 2 1 6 6 C 1.34940 * 126.03757 * 124.99460 * 5 4 2 7 7 C 1.35317 * 107.74438 * 179.77616 * 6 5 4 8 8 C 1.39872 * 107.92021 * 0.23195 * 7 6 5 9 9 N 1.30838 * 108.20312 * 359.97438 * 8 7 6 10 10 N 1.46501 * 109.47223 * 239.99882 * 2 1 3 11 11 C 1.34773 * 119.99599 * 85.00185 * 10 2 1 12 12 O 1.21441 * 120.00547 * 0.02562 * 11 10 2 13 13 C 1.48830 * 119.99861 * 180.02562 * 11 10 2 14 14 O 1.21498 * 119.99963 * 0.02562 * 13 11 10 15 15 N 1.34779 * 120.00202 * 180.02562 * 13 11 10 16 16 C 1.36121 * 120.00247 * 180.02562 * 15 13 11 17 17 H 1.07995 * 119.99943 * 0.02562 * 16 15 13 18 18 C 1.39585 * 119.99908 * 179.97438 * 16 15 13 19 19 N 1.31017 * 119.99620 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00242 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47484 * 89.99345 * 20 18 16 22 22 H 1.48504 * 109.47118 * 209.99908 * 20 18 16 23 23 H 1.48499 * 109.46645 * 329.99101 * 20 18 16 24 24 H 1.08998 * 109.47188 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46919 * 300.00353 * 1 2 3 26 26 H 1.09004 * 109.46838 * 59.99823 * 1 2 3 27 27 H 1.09005 * 109.47317 * 65.00027 * 4 2 1 28 28 H 1.08999 * 109.47532 * 305.00330 * 4 2 1 29 29 H 1.08002 * 126.13053 * 0.04913 * 6 5 4 30 30 H 1.08003 * 126.04109 * 180.21059 * 7 6 5 31 31 H 1.08001 * 125.89461 * 180.02562 * 8 7 6 32 32 H 0.96998 * 119.99962 * 265.00815 * 10 2 1 33 33 H 0.97002 * 119.99610 * 359.97438 * 15 13 11 34 34 H 0.97007 * 119.99530 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.6180 1.3111 6 6 4.2185 -0.1324 2.3449 7 6 5.5275 -0.2137 2.0117 8 6 5.6115 -0.7631 0.7282 9 7 4.3967 -1.0035 0.3061 10 7 2.0184 -0.6906 -1.1962 11 6 2.1471 -0.0182 -2.3570 12 8 1.8588 1.1602 -2.4115 13 6 2.6427 -0.7199 -3.5724 14 8 2.9307 -1.8990 -3.5181 15 7 2.7719 -0.0474 -4.7333 16 6 3.2247 -0.6893 -5.8449 17 1 3.4800 -1.7376 -5.7969 18 6 3.3580 0.0071 -7.0473 19 7 3.7943 -0.6107 -8.1172 20 14 2.9158 1.8201 -7.1306 21 1 4.1141 2.6371 -6.8118 22 1 2.4403 2.1513 -8.4979 23 1 1.8412 2.1130 -6.1485 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7516 -1.7716 1.2056 28 1 1.6053 -0.2619 2.1370 29 1 3.8204 0.2485 3.2738 30 1 6.3602 0.0920 2.6279 31 1 6.5221 -0.9563 0.1805 32 1 2.2490 -1.6318 -1.1526 33 1 2.5416 0.8938 -4.7767 34 1 3.8866 -0.1268 -8.9528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042542615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:45 Heat of formation + Delta-G solvation = -13.353229 kcal Electronic energy + Delta-G solvation = -19984.229820 eV Core-core repulsion = 16725.292325 eV Total energy + Delta-G solvation = -3258.937495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = -0.90 seconds Orbital eigenvalues (eV) -42.04518 -41.35876 -39.40090 -37.36945 -36.29339 -34.07514 -33.63093 -31.64642 -30.81162 -28.01552 -27.26443 -25.01795 -22.62961 -21.88098 -21.54697 -21.33189 -20.80353 -18.79519 -18.05912 -17.92848 -17.13678 -16.65555 -16.41049 -15.67229 -15.49117 -15.19825 -14.91765 -14.76446 -14.51001 -14.42499 -14.10869 -13.63422 -13.54072 -13.12777 -13.08176 -12.96784 -12.57857 -12.45522 -12.21900 -11.99286 -11.73150 -11.46584 -10.48673 -10.41105 -10.33635 -10.15018 -9.45073 -8.63589 -6.17475 0.53944 1.06717 1.25650 1.30620 1.36183 1.66384 1.78413 2.01031 2.08372 2.30264 3.04497 3.06065 3.42002 3.82306 3.84021 4.00539 4.14985 4.24198 4.33929 4.54932 4.67921 4.80392 4.91460 4.96355 5.19220 5.24622 5.26517 5.36883 5.72550 5.76866 6.08367 6.24951 6.36960 6.58194 6.85280 6.93242 7.14340 7.62261 8.51400 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.005054 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.067021 B = 5538.644907 C = 6000.063436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.125 3.875 3 H 0.074 0.926 4 C 0.125 3.875 5 N -0.382 5.382 6 C 0.060 3.940 7 C -0.288 4.288 8 C 0.019 3.981 9 N -0.334 5.334 10 N -0.674 5.674 11 C 0.526 3.474 12 O -0.568 6.568 13 C 0.408 3.592 14 O -0.601 6.601 15 N -0.536 5.536 16 C -0.340 4.340 17 H 0.076 0.924 18 C 0.011 3.989 19 N -0.893 5.893 20 Si 0.948 3.052 21 H -0.253 1.253 22 H -0.253 1.253 23 H -0.250 1.250 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.041 0.959 27 H 0.103 0.897 28 H 0.165 0.835 29 H 0.219 0.781 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.413 0.587 33 H 0.391 0.609 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 5.104 23.819 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.092 0.908 4 C 0.004 3.996 5 N -0.165 5.165 6 C -0.086 4.086 7 C -0.317 4.317 8 C -0.166 4.166 9 N -0.156 5.156 10 N -0.326 5.326 11 C 0.309 3.691 12 O -0.448 6.448 13 C 0.192 3.808 14 O -0.488 6.488 15 N -0.174 5.174 16 C -0.469 4.469 17 H 0.094 0.906 18 C -0.193 4.193 19 N -0.531 5.531 20 Si 0.768 3.232 21 H -0.178 1.178 22 H -0.177 1.177 23 H -0.174 1.174 24 H 0.094 0.906 25 H 0.127 0.873 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.182 0.818 29 H 0.236 0.764 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.250 0.750 33 H 0.227 0.773 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.440 4.683 22.659 23.769 hybrid contribution 0.859 0.561 -0.260 1.059 sum -4.580 5.244 22.400 23.457 Atomic orbital electron populations 1.22121 0.91645 1.03851 1.03797 1.21558 0.96198 0.96973 0.83174 0.90772 1.22434 0.73695 1.03798 0.99641 1.48984 1.07023 1.48339 1.12126 1.23289 0.92002 0.98472 0.94817 1.21841 0.97847 1.13877 0.98119 1.24279 0.96056 0.99511 0.96779 1.77518 1.00650 1.23993 1.13403 1.45614 1.64185 1.14774 1.08017 1.19769 0.77999 0.86213 0.85154 1.90647 1.51989 1.16268 1.85876 1.19752 0.88077 0.87795 0.85137 1.90597 1.56257 1.16778 1.85164 1.41694 1.55145 1.12115 1.08457 1.19157 1.43154 0.97220 0.87365 0.90622 1.26059 0.95292 1.04313 0.93662 1.69553 1.42059 1.39808 1.01660 0.85598 0.80348 0.77187 0.80109 1.17756 1.17692 1.17416 0.90575 0.87337 0.93940 0.87905 0.81765 0.76420 0.81644 0.80099 0.75038 0.77267 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.48 71.98 0.68 -1.97 16 2 C 0.13 2.82 2.79 44.99 0.13 2.95 16 3 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 4 C 0.12 1.81 6.04 86.38 0.52 2.33 16 5 N -0.38 -8.30 3.68 -348.05 -1.28 -9.58 16 6 C 0.06 0.97 11.45 83.54 0.96 1.93 16 7 C -0.29 -5.75 10.80 21.99 0.24 -5.51 16 8 C 0.02 0.53 12.03 85.24 1.03 1.55 16 9 N -0.33 -10.52 11.33 -57.02 -0.65 -11.16 16 10 N -0.67 -22.52 4.03 -444.46 -1.79 -24.31 16 11 C 0.53 22.75 7.83 87.08 0.68 23.43 16 12 O -0.57 -25.42 16.13 -3.53 -0.06 -25.48 16 13 C 0.41 21.34 7.82 87.08 0.68 22.02 16 14 O -0.60 -34.72 16.03 -3.71 -0.06 -34.78 16 15 N -0.54 -28.96 5.06 -308.88 -1.56 -30.52 16 16 C -0.34 -20.53 10.16 84.35 0.86 -19.67 16 17 H 0.08 5.23 7.36 -2.91 -0.02 5.21 16 18 C 0.01 0.64 5.51 85.14 0.47 1.11 16 19 N -0.89 -52.29 13.94 21.77 0.30 -51.99 16 20 Si 0.95 40.96 27.74 68.60 1.90 42.86 16 21 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.25 -10.31 6.53 99.48 0.65 -9.66 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.16 0.63 8.07 -2.39 -0.02 0.61 16 29 H 0.22 1.21 8.06 -2.91 -0.02 1.18 16 30 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.18 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.41 14.19 7.91 -92.71 -0.73 13.46 16 33 H 0.39 19.47 5.22 -92.71 -0.48 18.99 16 34 H 0.29 15.28 8.30 -92.70 -0.77 14.51 16 Total: -1.00 -81.51 303.77 2.92 -78.59 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: -0.13 Total: 38.21 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: 6.24 Total: 28.16 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -4.98 Total: -127.57 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -0.12 Total: -60.26 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.90 Total: 42.86 kcal Total: -81.51 2.92 -78.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042542615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.241 kcal (2) G-P(sol) polarization free energy of solvation -81.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.89 seconds