Wall clock time and date at job start Mon Mar 30 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46505 * 109.47075 * 119.99882 * 2 1 3 11 11 C 1.34773 * 120.00016 * 275.00291 * 10 2 1 12 12 O 1.21438 * 120.00383 * 359.97438 * 11 10 2 13 13 C 1.48829 * 119.99904 * 179.97438 * 11 10 2 14 14 O 1.21501 * 120.00184 * 0.02562 * 13 11 10 15 15 N 1.34782 * 120.00229 * 179.97438 * 13 11 10 16 16 C 1.36118 * 120.00230 * 179.97438 * 15 13 11 17 17 H 1.08000 * 119.99532 * 0.02562 * 16 15 13 18 18 C 1.39585 * 119.99866 * 180.02562 * 16 15 13 19 19 N 1.31014 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99732 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47106 * 89.99897 * 20 18 16 22 22 H 1.48502 * 109.46774 * 210.00184 * 20 18 16 23 23 H 1.48496 * 109.47028 * 329.99627 * 20 18 16 24 24 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 25 25 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 26 26 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 28 28 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 29 29 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 30 30 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 31 31 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 32 32 H 0.97002 * 119.99376 * 94.99990 * 10 2 1 33 33 H 0.97004 * 119.99588 * 0.02562 * 15 13 11 34 34 H 0.97002 * 119.99387 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0183 -0.6906 1.1962 11 6 2.1470 -0.0183 2.3572 12 8 1.8586 1.1601 2.4117 13 6 2.6425 -0.7200 3.5725 14 8 2.9315 -1.8989 3.5180 15 7 2.7717 -0.0475 4.7334 16 6 3.2244 -0.6895 5.8451 17 1 3.4805 -1.7376 5.7967 18 6 3.3577 0.0069 7.0475 19 7 3.0465 1.2782 7.1062 20 14 3.9797 -0.8739 8.5729 21 1 5.4597 -0.7697 8.6358 22 1 3.3874 -0.2476 9.7821 23 1 3.5862 -2.3046 8.5134 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6055 -0.2617 -2.1369 28 1 1.7517 -1.7714 -1.2056 29 1 4.1058 -2.6958 -1.4554 30 1 6.5342 -1.7002 -1.5146 31 1 6.3374 0.9550 -1.3524 32 1 2.2490 -1.6318 1.1526 33 1 2.5413 0.8937 4.7769 34 1 3.1395 1.7621 7.9417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042542617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:56 Heat of formation + Delta-G solvation = 5.718957 kcal Electronic energy + Delta-G solvation = -19866.000692 eV Core-core repulsion = 16607.890229 eV Total energy + Delta-G solvation = -3258.110463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.09256 -39.55196 -37.45257 -35.95402 -34.26556 -32.55133 -31.41042 -30.57524 -29.83536 -26.41858 -25.90123 -23.48803 -21.58674 -21.03405 -20.26547 -19.56194 -18.34998 -17.42262 -16.82502 -16.21044 -15.25554 -15.12326 -14.65402 -14.56059 -14.19975 -13.86333 -13.77400 -13.14781 -13.00988 -12.82990 -12.73538 -12.40876 -12.19495 -11.94806 -11.76432 -11.22431 -11.17729 -10.56076 -10.52885 -10.42332 -10.33345 -9.72046 -9.38227 -8.86026 -8.52537 -8.26479 -8.22606 -6.67037 -3.99416 1.95840 2.43912 2.51575 2.94451 3.14918 3.15273 3.20738 3.35493 4.05346 4.27470 4.30291 4.65182 4.83026 4.97681 5.04948 5.07364 5.19280 5.30562 5.34071 5.56676 5.65092 5.80952 5.94993 6.05591 6.08462 6.18157 6.69420 6.75420 7.02691 7.30797 7.66266 7.76270 7.85044 8.32242 8.61928 8.95953 9.31628 9.84882 10.47835 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.004711 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.525284 B = 5941.745912 C = 6480.300299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 H 0.103 0.897 4 C 0.127 3.873 5 N -0.370 5.370 6 C 0.054 3.946 7 C -0.274 4.274 8 C 0.043 3.957 9 N -0.289 5.289 10 N -0.709 5.709 11 C 0.518 3.482 12 O -0.543 6.543 13 C 0.394 3.606 14 O -0.599 6.599 15 N -0.498 5.498 16 C -0.306 4.306 17 H 0.112 0.888 18 C 0.031 3.969 19 N -0.868 5.868 20 Si 0.939 3.061 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.172 0.828 30 H 0.145 0.855 31 H 0.180 0.820 32 H 0.406 0.594 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -4.214 -15.760 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.121 0.879 4 C 0.005 3.995 5 N -0.152 5.152 6 C -0.092 4.092 7 C -0.304 4.304 8 C -0.143 4.143 9 N -0.110 5.110 10 N -0.364 5.364 11 C 0.302 3.698 12 O -0.419 6.419 13 C 0.178 3.822 14 O -0.488 6.488 15 N -0.132 5.132 16 C -0.437 4.437 17 H 0.130 0.870 18 C -0.176 4.176 19 N -0.506 5.506 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.189 0.811 30 H 0.163 0.837 31 H 0.197 0.803 32 H 0.241 0.759 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.987 -3.025 -15.506 15.922 hybrid contribution 0.897 -0.948 0.703 1.482 sum -1.090 -3.973 -14.802 15.365 Atomic orbital electron populations 1.22151 0.94104 1.02534 1.03297 1.21230 0.94401 0.98834 0.83199 0.87913 1.22090 0.75255 1.02809 0.99335 1.48613 1.06152 1.04161 1.56294 1.22549 0.90373 0.94511 1.01769 1.21482 0.97512 0.94529 1.16838 1.23870 0.94568 0.95981 0.99924 1.77359 1.04374 1.05721 1.23555 1.45632 1.67654 1.14415 1.08651 1.20655 0.77527 0.86655 0.84943 1.90688 1.49874 1.16004 1.85350 1.18946 0.90780 0.87963 0.84489 1.90569 1.57879 1.15580 1.84741 1.41564 1.51328 1.13119 1.07228 1.19877 1.40354 0.97227 0.86203 0.87010 1.25592 0.96473 0.95563 0.99953 1.69489 1.43960 1.08294 1.28885 0.85717 0.79000 0.79559 0.79250 1.19870 1.20497 1.18909 0.90970 0.91440 0.92105 0.88343 0.88081 0.81093 0.83722 0.80266 0.75865 0.76011 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 2 C 0.13 1.75 2.69 -67.93 -0.18 1.57 16 3 H 0.10 1.71 7.49 -51.92 -0.39 1.32 16 4 C 0.13 1.28 6.00 -4.04 -0.02 1.25 16 5 N -0.37 -4.78 3.60 -61.37 -0.22 -5.00 16 6 C 0.05 0.62 11.45 -17.22 -0.20 0.42 16 7 C -0.27 -3.31 10.80 -40.01 -0.43 -3.75 16 8 C 0.04 0.58 12.03 -17.37 -0.21 0.37 16 9 N -0.29 -4.47 12.34 30.63 0.38 -4.09 16 10 N -0.71 -12.14 4.99 -54.43 -0.27 -12.42 16 11 C 0.52 11.50 7.83 -11.88 -0.09 11.41 16 12 O -0.54 -13.05 16.13 5.42 0.09 -12.96 16 13 C 0.39 10.13 7.82 -11.87 -0.09 10.04 16 14 O -0.60 -16.24 16.03 5.37 0.09 -16.15 16 15 N -0.50 -13.60 5.25 -11.59 -0.06 -13.66 16 16 C -0.31 -8.55 9.67 -15.15 -0.15 -8.69 16 17 H 0.11 3.18 7.15 -52.49 -0.38 2.81 16 18 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 19 N -0.87 -23.54 13.03 55.53 0.72 -22.82 16 20 Si 0.94 20.23 29.56 -169.99 -5.02 15.21 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.18 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.41 6.57 8.06 -40.82 -0.33 6.24 16 33 H 0.40 11.16 7.35 -40.82 -0.30 10.86 16 34 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -33.87 308.70 -4.68 -38.55 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -3.91 Total: 16.82 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: -1.12 Total: 11.87 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.55 Total: -57.99 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: 0.17 Total: -29.11 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.87 -4.68 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042542617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.267 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds