Wall clock time and date at job start Mon Mar 30 2020 05:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46505 * 109.47075 * 119.99882 * 2 1 3 11 11 C 1.34773 * 120.00016 * 275.00291 * 10 2 1 12 12 O 1.21438 * 120.00383 * 359.97438 * 11 10 2 13 13 C 1.48829 * 119.99904 * 179.97438 * 11 10 2 14 14 O 1.21501 * 120.00184 * 0.02562 * 13 11 10 15 15 N 1.34782 * 120.00229 * 179.97438 * 13 11 10 16 16 C 1.36118 * 120.00230 * 179.97438 * 15 13 11 17 17 H 1.08000 * 119.99532 * 0.02562 * 16 15 13 18 18 C 1.39585 * 119.99866 * 180.02562 * 16 15 13 19 19 N 1.31014 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99732 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47106 * 89.99897 * 20 18 16 22 22 H 1.48502 * 109.46774 * 210.00184 * 20 18 16 23 23 H 1.48496 * 109.47028 * 329.99627 * 20 18 16 24 24 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 25 25 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 26 26 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 28 28 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 29 29 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 30 30 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 31 31 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 32 32 H 0.97002 * 119.99376 * 94.99990 * 10 2 1 33 33 H 0.97004 * 119.99588 * 0.02562 * 15 13 11 34 34 H 0.97002 * 119.99387 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0183 -0.6906 1.1962 11 6 2.1470 -0.0183 2.3572 12 8 1.8586 1.1601 2.4117 13 6 2.6425 -0.7200 3.5725 14 8 2.9315 -1.8989 3.5180 15 7 2.7717 -0.0475 4.7334 16 6 3.2244 -0.6895 5.8451 17 1 3.4805 -1.7376 5.7967 18 6 3.3577 0.0069 7.0475 19 7 3.0465 1.2782 7.1062 20 14 3.9797 -0.8739 8.5729 21 1 5.4597 -0.7697 8.6358 22 1 3.3874 -0.2476 9.7821 23 1 3.5862 -2.3046 8.5134 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6055 -0.2617 -2.1369 28 1 1.7517 -1.7714 -1.2056 29 1 4.1058 -2.6958 -1.4554 30 1 6.5342 -1.7002 -1.5146 31 1 6.3374 0.9550 -1.3524 32 1 2.2490 -1.6318 1.1526 33 1 2.5413 0.8937 4.7769 34 1 3.1395 1.7621 7.9417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042542617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:55 Heat of formation + Delta-G solvation = -20.833333 kcal Electronic energy + Delta-G solvation = -19867.152086 eV Core-core repulsion = 16607.890229 eV Total energy + Delta-G solvation = -3259.261857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.05495 -41.30115 -39.31267 -37.38172 -36.27850 -33.83723 -33.38726 -31.75611 -30.78574 -27.92025 -27.28746 -25.21111 -22.78958 -21.97190 -21.38287 -21.24652 -20.40852 -18.88476 -18.08953 -17.82078 -16.98776 -16.60662 -16.21139 -16.03412 -15.71363 -15.25382 -14.94891 -14.62458 -14.55328 -14.09892 -13.70935 -13.64126 -13.50400 -13.28658 -12.98442 -12.90439 -12.60220 -12.31623 -12.17608 -12.10870 -11.68653 -11.50240 -10.43291 -10.31741 -10.29050 -10.21522 -9.45366 -8.68135 -6.13617 0.57698 1.03401 1.39502 1.46036 1.54589 1.63968 1.80928 1.99898 2.27615 2.35281 3.13038 3.22966 3.38078 3.84350 3.98164 4.04932 4.13918 4.19227 4.41529 4.44162 4.68182 4.77440 4.92888 4.95179 5.18232 5.22281 5.22906 5.34082 5.64703 5.77278 6.11016 6.20068 6.34724 6.78069 6.81162 6.99495 7.24566 7.76241 8.47819 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.004711 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.525284 B = 5941.745912 C = 6480.300299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.068 0.932 4 C 0.127 3.873 5 N -0.377 5.377 6 C 0.056 3.944 7 C -0.291 4.291 8 C 0.027 3.973 9 N -0.339 5.339 10 N -0.686 5.686 11 C 0.520 3.480 12 O -0.567 6.567 13 C 0.388 3.612 14 O -0.616 6.616 15 N -0.511 5.511 16 C -0.346 4.346 17 H 0.100 0.900 18 C -0.005 4.005 19 N -0.897 5.897 20 Si 1.012 2.988 21 H -0.265 1.265 22 H -0.266 1.266 23 H -0.262 1.262 24 H 0.038 0.962 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.141 0.859 29 H 0.210 0.790 30 H 0.164 0.836 31 H 0.194 0.806 32 H 0.413 0.587 33 H 0.399 0.601 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 -5.896 -16.628 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.087 0.913 4 C 0.007 3.993 5 N -0.160 5.160 6 C -0.090 4.090 7 C -0.320 4.320 8 C -0.158 4.158 9 N -0.161 5.161 10 N -0.339 5.339 11 C 0.303 3.697 12 O -0.447 6.447 13 C 0.173 3.827 14 O -0.505 6.505 15 N -0.145 5.145 16 C -0.476 4.476 17 H 0.117 0.883 18 C -0.210 4.210 19 N -0.534 5.534 20 Si 0.833 3.167 21 H -0.190 1.190 22 H -0.190 1.190 23 H -0.186 1.186 24 H 0.058 0.942 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.144 0.856 28 H 0.159 0.841 29 H 0.227 0.773 30 H 0.181 0.819 31 H 0.211 0.789 32 H 0.250 0.750 33 H 0.233 0.767 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.303 -4.714 -16.423 17.241 hybrid contribution 0.976 -0.434 0.847 1.363 sum -1.327 -5.148 -15.576 16.458 Atomic orbital electron populations 1.22101 0.91859 1.04099 1.03280 1.21487 0.96082 0.97259 0.83023 0.91341 1.22362 0.74012 1.04971 0.97994 1.48850 1.07133 1.03816 1.56200 1.23228 0.89960 0.95851 0.99989 1.21857 0.98896 0.94108 1.17137 1.24309 0.94629 0.97359 0.99529 1.77289 1.05477 1.07785 1.25546 1.45603 1.65591 1.14560 1.08152 1.20070 0.77925 0.86266 0.85392 1.90679 1.51376 1.16826 1.85773 1.19629 0.89830 0.87953 0.85280 1.90529 1.58372 1.16308 1.85333 1.41674 1.51997 1.12881 1.07931 1.19993 1.42945 0.97155 0.87481 0.88260 1.26587 0.95624 0.96209 1.02533 1.69560 1.44082 1.09578 1.30219 0.84669 0.78648 0.78324 0.75107 1.18973 1.19037 1.18606 0.94247 0.88223 0.89703 0.85553 0.84125 0.77294 0.81882 0.78921 0.75000 0.76651 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.48 71.98 0.68 -2.45 16 2 C 0.13 3.22 2.69 44.99 0.12 3.34 16 3 H 0.07 2.29 7.49 -2.38 -0.02 2.27 16 4 C 0.13 2.14 6.00 86.38 0.52 2.66 16 5 N -0.38 -8.97 3.60 -348.07 -1.25 -10.23 16 6 C 0.06 1.13 11.45 83.54 0.96 2.09 16 7 C -0.29 -6.59 10.80 21.99 0.24 -6.36 16 8 C 0.03 0.72 12.03 85.24 1.03 1.75 16 9 N -0.34 -10.40 12.34 -57.02 -0.70 -11.10 16 10 N -0.69 -22.89 4.99 -444.44 -2.22 -25.11 16 11 C 0.52 23.50 7.83 87.08 0.68 24.18 16 12 O -0.57 -28.14 16.13 -3.52 -0.06 -28.19 16 13 C 0.39 20.43 7.82 87.08 0.68 21.11 16 14 O -0.62 -33.76 16.03 -3.72 -0.06 -33.82 16 15 N -0.51 -28.87 5.25 -308.87 -1.62 -30.49 16 16 C -0.35 -19.81 9.67 84.35 0.82 -19.00 16 17 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 18 C -0.01 -0.28 5.51 85.14 0.47 0.19 16 19 N -0.90 -49.11 13.03 21.76 0.28 -48.83 16 20 Si 1.01 41.15 29.56 68.60 2.03 43.17 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.14 1.29 8.07 -2.39 -0.02 1.27 16 29 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.19 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.41 12.63 8.06 -92.71 -0.75 11.88 16 33 H 0.40 22.97 7.35 -92.71 -0.68 22.29 16 34 H 0.29 14.46 8.30 -92.71 -0.77 13.69 16 Total: -1.00 -76.46 308.70 2.30 -74.15 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -0.28 Total: 42.92 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: 6.19 Total: 27.52 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -5.51 Total: -125.76 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -0.12 Total: -62.01 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -76.46 2.30 -74.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042542617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.321 kcal (2) G-P(sol) polarization free energy of solvation -76.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds