Wall clock time and date at job start Mon Mar 30 2020 04:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47180 * 2 1 4 4 C 1.52997 * 109.46812 * 120.00047 * 2 1 3 5 5 C 1.50702 * 109.47070 * 184.99677 * 4 2 1 6 6 C 1.34520 * 125.78625 * 90.00256 * 5 4 2 7 7 C 1.41381 * 106.83580 * 180.29744 * 6 5 4 8 8 C 1.34513 * 106.84363 * 359.57150 * 7 6 5 9 9 O 1.34302 * 125.79164 * 270.04068 * 5 4 2 10 10 N 1.46504 * 109.46919 * 239.99320 * 2 1 3 11 11 C 1.34777 * 119.99378 * 85.00849 * 10 2 1 12 12 O 1.21439 * 120.00244 * 359.97438 * 11 10 2 13 13 C 1.48838 * 119.99782 * 179.97438 * 11 10 2 14 14 O 1.21503 * 119.99723 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99799 * 179.97438 * 13 11 10 16 16 C 1.36119 * 119.99773 * 179.97438 * 15 13 11 17 17 H 1.08004 * 120.00235 * 0.02562 * 16 15 13 18 18 C 1.39587 * 120.00091 * 179.97438 * 16 15 13 19 19 N 1.31011 * 119.99911 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 119.99768 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47081 * 90.00003 * 20 18 16 22 22 H 1.48500 * 109.47009 * 209.99415 * 20 18 16 23 23 H 1.48497 * 109.47588 * 329.99778 * 20 18 16 24 24 H 1.09002 * 109.47585 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47299 * 300.00213 * 1 2 3 26 26 H 1.09003 * 109.46838 * 60.00058 * 1 2 3 27 27 H 1.08999 * 109.47588 * 64.99855 * 4 2 1 28 28 H 1.09001 * 109.47044 * 304.99856 * 4 2 1 29 29 H 1.08002 * 126.57789 * 0.02807 * 6 5 4 30 30 H 1.08009 * 126.57222 * 179.73218 * 7 6 5 31 31 H 1.07999 * 125.78721 * 180.19275 * 8 7 6 32 32 H 0.96996 * 120.00290 * 264.99700 * 10 2 1 33 33 H 0.96996 * 120.00348 * 0.02562 * 15 13 11 34 34 H 0.96999 * 119.99665 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 6 4.2362 0.3660 1.9169 7 6 5.6065 0.0745 1.7270 8 6 5.6677 -1.0721 1.0264 9 8 4.4141 -1.4833 0.7751 10 7 2.0183 -0.6908 -1.1961 11 6 2.1471 -0.0184 -2.3571 12 8 1.8580 1.1598 -2.4117 13 6 2.6437 -0.7200 -3.5722 14 8 2.9334 -1.8987 -3.5173 15 7 2.7720 -0.0477 -4.7333 16 6 3.2267 -0.6892 -5.8444 17 1 3.4842 -1.7369 -5.7957 18 6 3.3591 0.0069 -7.0471 19 7 3.7972 -0.6105 -8.1164 20 14 2.9130 1.8188 -7.1315 21 1 4.1096 2.6385 -6.8126 22 1 2.4376 2.1483 -8.4992 23 1 1.8375 2.1101 -6.1499 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7516 -1.7715 1.2056 28 1 1.6053 -0.2617 2.1369 29 1 3.8256 1.2157 2.4421 30 1 6.4437 0.6590 2.0794 31 1 6.5716 -1.5746 0.7152 32 1 2.2490 -1.6319 -1.1525 33 1 2.5411 0.8934 -4.7769 34 1 3.8889 -0.1268 -8.9522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042593194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:20 Heat of formation + Delta-G solvation = -83.980930 kcal Electronic energy + Delta-G solvation = -19929.467246 eV Core-core repulsion = 16635.174353 eV Total energy + Delta-G solvation = -3294.292893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.44967 -41.44975 -39.43364 -37.40117 -36.29688 -34.09045 -33.90656 -32.92545 -30.85878 -28.02127 -27.17336 -24.98475 -22.69747 -22.32939 -21.34604 -21.30900 -20.86305 -18.81726 -18.17483 -17.87896 -17.12033 -16.89267 -16.58850 -16.25721 -15.76329 -15.35631 -14.88924 -14.74374 -14.46330 -14.26564 -14.00895 -13.69589 -13.62764 -13.35514 -13.10645 -12.89268 -12.60232 -12.57637 -12.39968 -12.06598 -11.97365 -11.73048 -10.81638 -10.49212 -10.34810 -10.27047 -9.33452 -8.63939 -6.17953 0.51771 0.83304 1.27006 1.31432 1.37277 1.72824 1.74353 2.08704 2.18441 2.28105 3.04488 3.06465 3.69770 3.77872 3.85320 4.11091 4.17766 4.26984 4.35603 4.59217 4.72323 4.82123 4.93342 4.98022 5.06835 5.24952 5.26152 5.32208 5.39961 5.66052 5.72299 6.07744 6.25964 6.36416 6.57497 6.91661 7.13499 7.60995 8.50774 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.005057 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.184193 B = 5535.382435 C = 5978.100145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.081 0.919 4 C -0.039 4.039 5 C -0.029 4.029 6 C -0.220 4.220 7 C -0.227 4.227 8 C -0.058 4.058 9 O -0.194 6.194 10 N -0.688 5.688 11 C 0.524 3.476 12 O -0.560 6.560 13 C 0.404 3.596 14 O -0.603 6.603 15 N -0.533 5.533 16 C -0.340 4.340 17 H 0.077 0.923 18 C 0.012 3.988 19 N -0.892 5.892 20 Si 0.947 3.053 21 H -0.253 1.253 22 H -0.255 1.255 23 H -0.248 1.248 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.040 0.960 27 H 0.101 0.899 28 H 0.149 0.851 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.221 0.779 32 H 0.413 0.587 33 H 0.392 0.608 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 4.519 21.066 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.099 0.901 4 C -0.076 4.076 5 C -0.079 4.079 6 C -0.239 4.239 7 C -0.246 4.246 8 C -0.125 4.125 9 O -0.091 6.091 10 N -0.340 5.340 11 C 0.306 3.694 12 O -0.440 6.440 13 C 0.189 3.811 14 O -0.491 6.491 15 N -0.171 5.171 16 C -0.469 4.469 17 H 0.095 0.905 18 C -0.193 4.193 19 N -0.529 5.529 20 Si 0.767 3.233 21 H -0.177 1.177 22 H -0.178 1.178 23 H -0.173 1.173 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.167 0.833 29 H 0.184 0.816 30 H 0.182 0.818 31 H 0.237 0.763 32 H 0.249 0.751 33 H 0.228 0.772 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.276 4.320 20.706 21.404 hybrid contribution 0.482 0.437 -0.670 0.934 sum -2.793 4.757 20.036 20.781 Atomic orbital electron populations 1.22160 0.92542 1.03511 1.03398 1.21343 0.95663 0.97080 0.82404 0.90079 1.20646 0.84013 1.04115 0.98856 1.22868 0.93475 0.91690 0.99882 1.21939 0.93462 1.01852 1.06604 1.22171 0.98323 0.98994 1.05115 1.24634 0.86120 0.98748 1.02955 1.84039 1.16550 1.46751 1.61769 1.45824 1.64848 1.14877 1.08443 1.19825 0.78166 0.86326 0.85053 1.90662 1.51445 1.16185 1.85676 1.19756 0.88352 0.87808 0.85191 1.90600 1.56505 1.16753 1.85214 1.41700 1.54761 1.12202 1.08444 1.19170 1.43051 0.97334 0.87383 0.90503 1.26066 0.95239 1.04323 0.93673 1.69545 1.41832 1.39850 1.01687 0.85606 0.80422 0.77162 0.80139 1.17669 1.17842 1.17256 0.90946 0.87877 0.94046 0.88036 0.83275 0.81553 0.81770 0.76266 0.75065 0.77151 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.48 71.98 0.68 -2.21 16 2 C 0.14 3.13 2.56 44.99 0.12 3.24 16 3 H 0.08 2.08 7.58 -2.39 -0.02 2.06 16 4 C -0.04 -0.63 5.29 29.85 0.16 -0.48 16 5 C -0.03 -0.68 6.30 24.83 0.16 -0.52 16 6 C -0.22 -4.74 10.81 22.19 0.24 -4.50 16 7 C -0.23 -5.00 10.91 22.19 0.24 -4.75 16 8 C -0.06 -1.37 12.09 66.97 0.81 -0.56 16 9 O -0.19 -5.38 10.65 -2.47 -0.03 -5.41 16 10 N -0.69 -21.95 4.78 -444.45 -2.13 -24.08 16 11 C 0.52 21.70 7.83 87.08 0.68 22.38 16 12 O -0.56 -24.11 16.13 -3.53 -0.06 -24.16 16 13 C 0.40 20.38 7.82 87.08 0.68 21.06 16 14 O -0.60 -33.61 16.03 -3.73 -0.06 -33.67 16 15 N -0.53 -27.92 5.06 -308.86 -1.56 -29.48 16 16 C -0.34 -20.06 10.16 84.35 0.86 -19.20 16 17 H 0.08 5.19 7.37 -2.91 -0.02 5.17 16 18 C 0.01 0.66 5.51 85.14 0.47 1.13 16 19 N -0.89 -51.29 13.94 21.77 0.30 -50.99 16 20 Si 0.95 39.96 27.74 68.60 1.90 41.86 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.25 -9.96 6.53 99.48 0.65 -9.31 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.22 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.41 13.13 8.06 -92.71 -0.75 12.38 16 33 H 0.39 18.86 5.22 -92.71 -0.48 18.37 16 34 H 0.29 15.04 8.30 -92.71 -0.77 14.27 16 Total: -1.00 -74.32 305.24 3.32 -71.00 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.14 Total: 39.35 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 5.09 Total: 15.58 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.38 Total: -104.55 kcal Atomic # 8 Polarization: -63.10 SS G_CDS: -0.14 Total: -63.25 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.90 Total: 41.86 kcal Total: -74.32 3.32 -71.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042593194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.981 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds