Wall clock time and date at job start Mon Mar 30 2020 04:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46666 * 2 1 4 4 C 1.52997 * 109.47050 * 240.00272 * 2 1 3 5 5 C 1.50708 * 109.47127 * 175.00022 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 N 1.46499 * 109.47391 * 119.99461 * 2 1 3 11 11 C 1.34769 * 120.00448 * 275.00355 * 10 2 1 12 12 O 1.21441 * 119.99811 * 359.97438 * 11 10 2 13 13 C 1.48830 * 120.00495 * 180.02562 * 11 10 2 14 14 O 1.21506 * 119.99415 * 359.97438 * 13 11 10 15 15 N 1.34769 * 120.00495 * 180.02562 * 13 11 10 16 16 C 1.36119 * 120.00125 * 179.97438 * 15 13 11 17 17 H 1.07996 * 120.00362 * 0.02562 * 16 15 13 18 18 C 1.39588 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31012 * 120.00250 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00095 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46923 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47536 * 119.99768 * 20 18 16 23 23 H 1.48496 * 109.47031 * 240.00300 * 20 18 16 24 24 H 1.09002 * 109.47404 * 299.99567 * 1 2 3 25 25 H 1.09003 * 109.47621 * 60.00459 * 1 2 3 26 26 H 1.09005 * 109.46666 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47369 * 54.99474 * 4 2 1 28 28 H 1.09005 * 109.46999 * 294.99290 * 4 2 1 29 29 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 30 30 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 31 31 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 32 32 H 0.97003 * 119.99551 * 95.00447 * 10 2 1 33 33 H 0.97003 * 120.00000 * 0.02562 * 15 13 11 34 34 H 0.96997 * 120.00537 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 6 4.4156 -1.4849 -0.7752 7 6 5.7105 -1.0013 -1.0723 8 6 5.5507 0.1351 -1.7740 9 8 4.2350 0.3644 -1.9165 10 7 2.0184 -0.6905 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8586 1.1602 2.4115 13 6 2.6438 -0.7195 3.5722 14 8 2.9328 -1.8984 3.5176 15 7 2.7720 -0.0473 4.7332 16 6 3.2258 -0.6889 5.8446 17 1 3.4835 -1.7365 5.7960 18 6 3.3591 0.0075 7.0470 19 7 3.0470 1.2785 7.1060 20 14 3.9825 -0.8728 8.5721 21 1 4.2625 -2.2937 8.2437 22 1 5.2286 -0.2191 9.0465 23 1 2.9514 -0.8057 9.6386 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6053 -0.2617 -2.1370 28 1 1.7517 -1.7715 -1.2056 29 1 4.1742 -2.3809 -0.2226 30 1 6.6481 -1.4592 -0.7936 31 1 6.3455 0.7574 -2.1578 32 1 2.2491 -1.6317 1.1526 33 1 2.5402 0.8936 4.7771 34 1 3.1392 1.7624 7.9416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042593197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:24 Heat of formation + Delta-G solvation = -89.294514 kcal Electronic energy + Delta-G solvation = -19853.242741 eV Core-core repulsion = 16558.719434 eV Total energy + Delta-G solvation = -3294.523307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.46713 -41.33400 -39.30393 -37.38537 -36.24587 -33.91140 -33.54263 -32.90687 -30.90324 -27.88651 -27.17557 -25.15719 -22.71845 -22.38706 -21.35758 -21.14260 -20.36619 -18.83187 -18.19565 -17.77919 -17.08833 -16.82463 -16.49412 -16.19884 -15.77714 -15.53129 -14.85675 -14.59550 -14.53162 -13.92230 -13.74611 -13.69115 -13.61987 -13.24474 -13.04441 -12.97630 -12.56864 -12.50592 -12.25936 -12.09027 -12.03080 -11.67780 -10.82984 -10.28519 -10.24259 -10.21425 -9.34980 -8.66166 -6.11211 0.61747 0.81295 1.40788 1.45667 1.56857 1.71259 1.84082 2.13242 2.29705 2.38599 3.15476 3.28640 3.68095 3.79794 4.03598 4.11412 4.16524 4.28223 4.33617 4.55997 4.72797 4.80309 4.95537 4.98050 5.04409 5.24861 5.25293 5.32236 5.42187 5.61357 5.68184 6.16729 6.21568 6.39741 6.82205 7.03877 7.28339 7.79856 8.50092 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.004690 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.584670 B = 5969.316458 C = 6548.527311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.069 0.931 4 C -0.037 4.037 5 C -0.026 4.026 6 C -0.222 4.222 7 C -0.234 4.234 8 C -0.047 4.047 9 O -0.190 6.190 10 N -0.686 5.686 11 C 0.520 3.480 12 O -0.568 6.568 13 C 0.390 3.610 14 O -0.615 6.615 15 N -0.513 5.513 16 C -0.345 4.345 17 H 0.099 0.901 18 C -0.005 4.005 19 N -0.898 5.898 20 Si 1.010 2.990 21 H -0.264 1.264 22 H -0.266 1.266 23 H -0.265 1.265 24 H 0.037 0.963 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.235 0.765 32 H 0.414 0.586 33 H 0.400 0.600 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -2.861 -16.638 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.087 0.913 4 C -0.074 4.074 5 C -0.076 4.076 6 C -0.241 4.241 7 C -0.253 4.253 8 C -0.113 4.113 9 O -0.087 6.087 10 N -0.339 5.339 11 C 0.303 3.697 12 O -0.448 6.448 13 C 0.175 3.825 14 O -0.505 6.505 15 N -0.147 5.147 16 C -0.474 4.474 17 H 0.116 0.884 18 C -0.209 4.209 19 N -0.535 5.535 20 Si 0.831 3.169 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.190 1.190 24 H 0.056 0.944 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.166 0.834 30 H 0.176 0.824 31 H 0.251 0.749 32 H 0.251 0.749 33 H 0.234 0.766 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.505 -2.383 -16.677 16.854 hybrid contribution 0.630 -0.183 1.075 1.259 sum 0.125 -2.566 -15.602 15.813 Atomic orbital electron populations 1.22149 0.92591 1.03694 1.03073 1.21202 0.95621 0.96721 0.82836 0.91316 1.20572 0.84201 1.04441 0.98169 1.22715 0.95740 0.89084 1.00034 1.21879 0.93129 1.03297 1.05812 1.22172 0.99356 0.99018 1.04770 1.24682 0.83110 0.99823 1.03715 1.83987 1.18936 1.44379 1.61352 1.45719 1.65229 1.14754 1.08166 1.20045 0.78013 0.86302 0.85350 1.90673 1.51550 1.16756 1.85776 1.19675 0.89580 0.87944 0.85319 1.90538 1.58197 1.16356 1.85360 1.41665 1.52167 1.12949 1.07898 1.20008 1.42758 0.97130 0.87536 0.88358 1.26546 0.95742 0.96194 1.02452 1.69556 1.44374 1.09543 1.30065 0.84637 0.78268 0.78337 0.75633 1.18747 1.19113 1.19009 0.94354 0.88295 0.90366 0.85384 0.85730 0.83371 0.82428 0.74879 0.74910 0.76592 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.48 71.98 0.68 -2.60 16 2 C 0.14 3.54 2.56 44.99 0.12 3.66 16 3 H 0.07 2.10 7.58 -2.38 -0.02 2.08 16 4 C -0.04 -0.66 5.29 29.85 0.16 -0.51 16 5 C -0.03 -0.64 6.33 24.83 0.16 -0.49 16 6 C -0.22 -5.92 10.69 22.19 0.24 -5.69 16 7 C -0.23 -5.86 10.91 22.19 0.24 -5.61 16 8 C -0.05 -1.04 12.09 66.97 0.81 -0.23 16 9 O -0.19 -4.89 10.65 -2.51 -0.03 -4.91 16 10 N -0.69 -22.80 4.68 -444.47 -2.08 -24.88 16 11 C 0.52 23.05 7.83 87.08 0.68 23.73 16 12 O -0.57 -27.36 16.13 -3.53 -0.06 -27.42 16 13 C 0.39 20.32 7.82 87.08 0.68 21.00 16 14 O -0.61 -33.60 16.03 -3.73 -0.06 -33.66 16 15 N -0.51 -28.68 5.25 -308.88 -1.62 -30.30 16 16 C -0.34 -19.64 9.67 84.35 0.82 -18.82 16 17 H 0.10 5.76 7.15 -2.91 -0.02 5.73 16 18 C -0.01 -0.28 5.51 85.14 0.47 0.19 16 19 N -0.90 -48.87 13.03 21.77 0.28 -48.58 16 20 Si 1.01 41.14 29.56 68.60 2.03 43.17 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 30 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 31 H 0.24 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.41 12.88 8.06 -92.71 -0.75 12.13 16 33 H 0.40 22.68 7.35 -92.71 -0.68 22.00 16 34 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 Total: -1.00 -71.51 308.16 3.23 -68.28 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.28 Total: 43.69 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.05 Total: 14.63 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -3.42 Total: -103.76 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -0.14 Total: -66.00 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -71.51 3.23 -68.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042593197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.018 kcal (2) G-P(sol) polarization free energy of solvation -71.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds