Wall clock time and date at job start Mon Mar 30 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47263 * 2 1 4 4 C 1.46500 * 120.00023 * 265.07512 * 3 2 1 5 5 C 1.50699 * 109.46862 * 284.34492 * 4 3 2 6 6 H 1.07998 * 120.00335 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99716 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00097 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00162 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47036 * 90.00051 * 9 7 5 11 11 H 1.48503 * 109.47163 * 209.99744 * 9 7 5 12 12 H 1.48500 * 109.47168 * 330.00280 * 9 7 5 13 13 C 1.34780 * 120.00081 * 85.07195 * 3 2 1 14 14 O 1.21612 * 120.00060 * 6.60909 * 13 3 2 15 15 C 1.47375 * 120.00324 * 186.60202 * 13 3 2 16 16 C 1.39857 * 120.08943 * 325.73958 * 15 13 3 17 17 C 1.36530 * 120.07605 * 179.97438 * 16 15 13 18 18 C 1.39301 * 120.27170 * 359.97438 * 17 16 15 19 19 N 1.39051 * 119.91093 * 180.02562 * 18 17 16 20 20 C 1.39077 * 120.18221 * 359.77424 * 18 17 16 21 21 C 1.38007 * 119.91971 * 0.48128 * 20 18 17 22 22 F 1.35092 * 120.13839 * 179.77016 * 21 20 18 23 23 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47521 * 300.00095 * 1 2 3 25 25 H 1.09000 * 109.46585 * 60.00436 * 1 2 3 26 26 H 1.08997 * 109.47521 * 239.99905 * 2 1 3 27 27 H 1.09005 * 109.47001 * 119.99741 * 2 1 3 28 28 H 1.08996 * 109.47249 * 44.34687 * 4 3 2 29 29 H 1.09006 * 109.47201 * 164.34939 * 4 3 2 30 30 H 0.97002 * 120.00068 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.96074 * 359.97438 * 16 15 13 32 32 H 1.07996 * 119.86365 * 180.02562 * 17 16 15 33 33 H 0.97001 * 120.00186 * 0.02562 * 19 18 17 34 34 H 0.96998 * 120.00216 * 180.02562 * 19 18 17 35 35 H 1.08001 * 120.04145 * 180.28283 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3652 2.0355 -1.2640 5 6 3.6898 1.5101 -1.7546 6 1 4.2204 0.7639 -1.1819 7 6 4.2243 1.9822 -2.9346 8 7 5.3800 1.5235 -3.3631 9 14 3.3069 3.2735 -3.9249 10 1 3.7268 4.6274 -3.4822 11 1 3.6189 3.1054 -5.3670 12 1 1.8458 3.1144 -3.7126 13 6 2.1485 2.0499 1.1629 14 8 1.9767 1.4722 2.2191 15 6 2.4991 3.4813 1.1546 16 6 3.3533 3.9883 0.1700 17 6 3.6776 5.3145 0.1622 18 6 3.1603 6.1696 1.1327 19 7 3.4951 7.5191 1.1174 20 6 2.3058 5.6782 2.1138 21 6 1.9771 4.3380 2.1321 22 9 1.1511 3.8551 3.0858 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.5941 1.8258 -2.0053 29 1 2.4365 3.1120 -1.1084 30 1 5.7562 1.8559 -4.1931 31 1 3.7569 3.3299 -0.5850 32 1 4.3372 5.7024 -0.5999 33 1 4.0878 7.8640 0.4313 34 1 3.1360 8.1156 1.7927 35 1 1.9024 6.3441 2.8624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043571534.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:44 Heat of formation + Delta-G solvation = -35.039329 kcal Electronic energy + Delta-G solvation = -20618.387928 eV Core-core repulsion = 17338.590091 eV Total energy + Delta-G solvation = -3279.797837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -48.50210 -39.79488 -38.25095 -35.36346 -34.38797 -32.78907 -31.10298 -30.11732 -28.61180 -27.66454 -23.54884 -23.01229 -22.33635 -21.66380 -18.92449 -17.52650 -17.27781 -17.07334 -16.55738 -15.55642 -15.34511 -14.99982 -14.95146 -14.47783 -14.28984 -13.75379 -13.58094 -13.11050 -12.84438 -12.73014 -12.46639 -12.12640 -11.88416 -11.73927 -11.57263 -11.05712 -10.88818 -10.53205 -10.41417 -10.30512 -10.01158 -9.63748 -9.08176 -8.85298 -8.47097 -7.76225 -7.45158 -6.31846 -4.34475 1.36695 1.59040 3.10019 3.20325 3.22871 3.41387 3.71496 3.85447 4.15615 4.17816 4.65628 4.95345 5.09155 5.21916 5.32322 5.64652 5.68469 5.83079 5.83686 5.90345 6.17737 6.31188 6.36103 6.40740 6.49902 6.61795 6.65050 6.74552 6.76871 7.02062 7.28054 7.41572 7.46496 7.65432 8.08556 8.40439 8.76638 8.95924 9.26629 10.79744 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.009672 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.611846 B = 2894.338167 C = 4424.195036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.584 5.584 4 C 0.181 3.819 5 C -0.544 4.544 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.882 5.882 9 Si 0.862 3.138 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.261 1.261 13 C 0.564 3.436 14 O -0.560 6.560 15 C -0.225 4.225 16 C -0.019 4.019 17 C -0.222 4.222 18 C 0.260 3.740 19 N -0.869 5.869 20 C -0.261 4.261 21 C 0.195 3.805 22 F -0.126 7.126 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.056 0.944 30 H 0.269 0.731 31 H 0.189 0.811 32 H 0.129 0.871 33 H 0.401 0.599 34 H 0.398 0.602 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 9.935 4.653 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.314 5.314 4 C 0.060 3.940 5 C -0.582 4.582 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.518 5.518 9 Si 0.687 3.313 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.185 1.185 13 C 0.353 3.647 14 O -0.441 6.441 15 C -0.230 4.230 16 C -0.037 4.037 17 C -0.245 4.245 18 C 0.153 3.847 19 N -0.407 5.407 20 C -0.285 4.285 21 C 0.174 3.826 22 F -0.104 7.104 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.206 0.794 32 H 0.147 0.853 33 H 0.230 0.770 34 H 0.226 0.774 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.488 9.563 5.051 12.128 hybrid contribution -0.355 1.052 -0.619 1.271 sum -5.843 10.615 4.432 12.902 Atomic orbital electron populations 1.22125 0.96964 1.01369 1.01793 1.21253 0.93099 0.83128 1.03094 1.47734 1.63120 1.13451 1.07080 1.20595 0.96848 0.94980 0.81565 1.21379 1.03463 1.25752 1.07616 0.89910 1.24903 0.94608 0.96257 0.96727 1.69891 1.17393 1.42453 1.22113 0.87052 0.81334 0.82535 0.80331 1.19300 1.20654 1.18510 1.17889 0.77021 0.85989 0.83779 1.90711 1.53076 1.69433 1.30866 1.19786 1.08071 0.94634 1.00549 1.22217 0.90710 0.95958 0.94843 1.20448 1.07859 0.94046 1.02150 1.17625 0.90455 0.84583 0.92058 1.42374 1.55950 1.06218 1.36118 1.20196 1.09042 0.94369 1.04852 1.17306 0.88915 0.90989 0.85377 1.91515 1.68882 1.88622 1.61428 0.92194 0.92805 0.92805 0.89688 0.90944 0.95333 0.92652 0.92131 0.79411 0.85315 0.76988 0.77415 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.20 37.16 0.38 -2.31 16 2 C 0.12 2.26 6.07 -4.04 -0.02 2.24 16 3 N -0.58 -12.69 2.50 -176.35 -0.44 -13.14 16 4 C 0.18 4.03 3.73 -5.19 -0.02 4.01 16 5 C -0.54 -13.88 8.09 -34.44 -0.28 -14.16 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.88 -24.55 13.96 55.43 0.77 -23.78 16 9 Si 0.86 18.82 27.47 -169.99 -4.67 14.16 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 13 C 0.56 12.74 7.27 -12.54 -0.09 12.65 16 14 O -0.56 -13.78 15.67 5.27 0.08 -13.70 16 15 C -0.22 -4.57 5.52 -104.89 -0.58 -5.15 16 16 C -0.02 -0.37 7.35 -39.59 -0.29 -0.66 16 17 C -0.22 -3.57 9.81 -39.80 -0.39 -3.96 16 18 C 0.26 3.59 6.75 -83.88 -0.57 3.02 16 19 N -0.87 -8.11 9.05 32.40 0.29 -7.82 16 20 C -0.26 -3.87 9.86 -39.35 -0.39 -4.26 16 21 C 0.20 3.60 7.24 -38.98 -0.28 3.32 16 22 F -0.13 -2.46 16.09 2.25 0.04 -2.42 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.62 7.91 -51.93 -0.41 1.21 16 27 H 0.07 1.42 7.49 -51.93 -0.39 1.03 16 28 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 29 H 0.06 1.20 3.22 -52.29 -0.17 1.03 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.19 4.07 3.90 -52.49 -0.20 3.86 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.40 3.06 8.83 -40.82 -0.36 2.70 16 34 H 0.40 2.78 8.83 -40.82 -0.36 2.42 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -30.49 297.13 -6.05 -36.54 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.97 Total: 8.98 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.63 Total: -3.30 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.63 Total: -44.73 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.67 Total: 14.16 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.49 -6.05 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043571534.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.497 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds