Wall clock time and date at job start Mon Mar 30 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47190 * 2 1 4 4 C 1.36931 * 119.99978 * 274.98153 * 3 2 1 5 5 H 1.08001 * 120.00184 * 24.10715 * 4 3 2 6 6 C 1.38817 * 119.99730 * 204.11396 * 4 3 2 7 7 N 1.31618 * 120.00143 * 5.04454 * 6 4 3 8 8 Si 1.86805 * 119.99615 * 185.04884 * 6 4 3 9 9 H 1.48496 * 109.47340 * 89.99664 * 8 6 4 10 10 H 1.48506 * 109.46782 * 209.99571 * 8 6 4 11 11 H 1.48503 * 109.47057 * 329.99119 * 8 6 4 12 12 C 1.46499 * 119.99881 * 94.98603 * 3 2 1 13 13 C 1.50702 * 109.47484 * 89.99563 * 12 3 2 14 14 O 1.21289 * 119.99758 * 0.02562 * 13 12 3 15 15 N 1.34775 * 119.99752 * 179.97438 * 13 12 3 16 16 C 1.40044 * 119.99710 * 185.83346 * 15 13 12 17 17 C 1.38810 * 120.08035 * 24.69095 * 16 15 13 18 18 C 1.38140 * 119.95786 * 179.97438 * 17 16 15 19 19 C 1.38289 * 120.10984 * 0.02562 * 18 17 16 20 20 C 1.38263 * 120.15591 * 359.97438 * 19 18 17 21 21 C 1.38311 * 120.04725 * 0.02562 * 20 19 18 22 22 F 1.35095 * 120.05782 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47019 * 59.99607 * 1 2 3 24 24 H 1.09000 * 109.47553 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47309 * 300.00343 * 1 2 3 26 26 H 1.09004 * 109.47385 * 240.00205 * 2 1 3 27 27 H 1.09001 * 109.47019 * 120.00393 * 2 1 3 28 28 H 0.97001 * 119.99661 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46633 * 329.99478 * 12 3 2 30 30 H 1.08999 * 109.47236 * 209.99996 * 12 3 2 31 31 H 0.97001 * 120.00333 * 5.83637 * 15 13 12 32 32 H 1.08006 * 120.02025 * 359.96182 * 17 16 15 33 33 H 1.07992 * 119.94517 * 180.02562 * 18 17 16 34 34 H 1.07992 * 119.92187 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.97839 * 179.75033 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1494 2.0611 -1.1814 5 1 1.5610 1.7713 -2.0394 6 6 3.0389 3.1226 -1.2762 7 7 3.8275 3.4130 -0.2632 8 14 3.1166 4.1390 -2.8416 9 1 2.1613 5.2717 -2.7443 10 1 4.4931 4.6664 -3.0216 11 1 2.7572 3.2867 -4.0035 12 6 2.3664 2.0351 1.2639 13 6 3.8203 1.7874 1.5740 14 8 4.4990 1.1298 0.8137 15 7 4.3664 2.2974 2.6956 16 6 5.7425 2.1722 2.9237 17 6 6.6133 2.0123 1.8547 18 6 7.9702 1.8896 2.0826 19 6 8.4627 1.9252 3.3743 20 6 7.5995 2.0844 4.4426 21 6 6.2397 2.2079 4.2218 22 9 5.3960 2.3628 5.2655 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.4488 4.1550 -0.3294 29 1 1.7496 1.6283 2.0653 30 1 2.1906 3.1074 1.1788 31 1 3.8065 2.7512 3.3447 32 1 6.2301 1.9836 0.8453 33 1 8.6475 1.7656 1.2507 34 1 9.5240 1.8286 3.5491 35 1 7.9868 2.1078 5.4505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:16 Heat of formation + Delta-G solvation = -21.218083 kcal Electronic energy + Delta-G solvation = -20521.219469 eV Core-core repulsion = 17242.020966 eV Total energy + Delta-G solvation = -3279.198502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = -0.68 seconds Orbital eigenvalues (eV) -48.52233 -39.43875 -37.62950 -35.55405 -33.64882 -31.89228 -30.21165 -29.69610 -28.74038 -26.50082 -23.75573 -22.74458 -21.96421 -20.61618 -19.38951 -17.73544 -16.94254 -16.34034 -16.09540 -15.48467 -15.18476 -14.88881 -14.40584 -13.90912 -13.76877 -13.47553 -13.31326 -12.85007 -12.63301 -12.35067 -12.02232 -11.67694 -11.52313 -11.29565 -11.02948 -10.99272 -10.87385 -10.52069 -10.31498 -9.99109 -9.86465 -9.66580 -8.79872 -8.50687 -8.27001 -7.37959 -6.82385 -5.88766 -3.29211 1.55824 1.70541 3.34837 3.41680 3.43190 3.83740 3.96611 4.32811 4.52889 4.62513 5.08963 5.32147 5.37188 5.38623 5.55643 5.80043 5.95627 5.96887 6.21233 6.25090 6.30026 6.35755 6.51050 6.56432 6.62165 6.81687 6.82538 6.94030 7.01857 7.10772 7.12730 7.62075 7.71363 8.24366 8.41415 9.12238 9.55472 9.77527 10.22610 11.22143 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.006653 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.653560 B = 4207.899022 C = 5036.188220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 N -0.575 5.575 4 C -0.244 4.244 5 H 0.073 0.927 6 C 0.005 3.995 7 N -0.910 5.910 8 Si 0.916 3.084 9 H -0.289 1.289 10 H -0.291 1.291 11 H -0.281 1.281 12 C 0.175 3.825 13 C 0.535 3.465 14 O -0.507 6.507 15 N -0.685 5.685 16 C 0.157 3.843 17 C -0.106 4.106 18 C -0.111 4.111 19 C -0.136 4.136 20 C -0.137 4.137 21 C 0.035 3.965 22 F -0.147 7.147 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.256 0.744 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.400 0.600 32 H 0.167 0.833 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -1.633 8.154 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 N -0.294 5.294 4 C -0.374 4.374 5 H 0.091 0.909 6 C -0.192 4.192 7 N -0.556 5.556 8 Si 0.747 3.253 9 H -0.216 1.216 10 H -0.218 1.218 11 H -0.206 1.206 12 C 0.044 3.956 13 C 0.323 3.677 14 O -0.379 6.379 15 N -0.329 5.329 16 C 0.058 3.942 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.156 4.156 20 C -0.157 4.157 21 C 0.013 3.987 22 F -0.126 7.126 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.117 0.883 31 H 0.233 0.767 32 H 0.184 0.816 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.460 -1.999 7.489 8.488 hybrid contribution -0.041 1.008 -0.221 1.033 sum 3.419 -0.990 7.268 8.093 Atomic orbital electron populations 1.22310 0.99550 0.99208 1.01390 1.20777 0.91754 0.86405 0.99313 1.43707 1.74339 1.08975 1.02428 1.19223 1.17141 1.10786 0.90208 0.90884 1.24955 0.95974 1.00522 0.97776 1.69351 1.25188 1.30590 1.30510 0.86064 0.76800 0.79790 0.82645 1.21637 1.21755 1.20614 1.20414 0.88094 0.99896 0.87181 1.22271 0.92686 0.75578 0.77146 1.90439 1.62729 1.39207 1.45503 1.44148 1.04781 1.58940 1.25064 1.18029 0.86031 0.98889 0.91262 1.21701 0.91701 0.98376 1.00866 1.21141 0.95318 0.99843 0.96705 1.20797 0.99122 1.03423 0.92239 1.20783 0.90998 1.03789 1.00100 1.17473 0.88210 1.10667 0.82389 1.91412 1.70938 1.93883 1.56377 0.92983 0.94233 0.93748 0.93582 0.94534 0.93310 0.94676 0.88272 0.76654 0.81572 0.85891 0.85976 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.21 37.15 0.38 -2.49 16 2 C 0.14 3.00 6.39 -4.04 -0.03 2.97 16 3 N -0.57 -13.86 2.03 -174.61 -0.35 -14.22 16 4 C -0.24 -6.44 9.67 -15.06 -0.15 -6.59 16 5 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 6 C 0.00 0.12 5.22 -17.43 -0.09 0.03 16 7 N -0.91 -24.41 7.99 55.49 0.44 -23.97 16 8 Si 0.92 21.53 29.56 -169.99 -5.02 16.50 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.18 3.91 5.41 -5.19 -0.03 3.88 16 13 C 0.53 12.28 5.40 -10.99 -0.06 12.22 16 14 O -0.51 -13.42 12.76 5.55 0.07 -13.35 16 15 N -0.69 -13.50 5.31 -9.80 -0.05 -13.55 16 16 C 0.16 3.04 6.44 -83.59 -0.54 2.50 16 17 C -0.11 -2.11 8.72 -39.41 -0.34 -2.45 16 18 C -0.11 -1.79 10.04 -39.60 -0.40 -2.19 16 19 C -0.14 -1.90 10.04 -39.55 -0.40 -2.30 16 20 C -0.14 -1.99 10.02 -39.55 -0.40 -2.39 16 21 C 0.04 0.60 7.31 -39.25 -0.29 0.31 16 22 F -0.15 -2.41 16.81 2.25 0.04 -2.37 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.10 2.35 6.83 -51.93 -0.35 1.99 16 31 H 0.40 6.78 8.46 -40.82 -0.35 6.43 16 32 H 0.17 3.95 5.79 -52.48 -0.30 3.65 16 33 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -29.49 300.66 -7.02 -36.51 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.34 Total: 6.42 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.33 Total: 3.49 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.04 Total: -51.74 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.07 Total: -13.35 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.49 -7.02 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.294 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.68 seconds