Wall clock time and date at job start Mon Mar 30 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47190 * 2 1 4 4 C 1.36931 * 119.99978 * 274.98153 * 3 2 1 5 5 H 1.08001 * 120.00184 * 24.10715 * 4 3 2 6 6 C 1.38817 * 119.99730 * 204.11396 * 4 3 2 7 7 N 1.31618 * 120.00143 * 5.04454 * 6 4 3 8 8 Si 1.86805 * 119.99615 * 185.04884 * 6 4 3 9 9 H 1.48496 * 109.47340 * 89.99664 * 8 6 4 10 10 H 1.48506 * 109.46782 * 209.99571 * 8 6 4 11 11 H 1.48503 * 109.47057 * 329.99119 * 8 6 4 12 12 C 1.46499 * 119.99881 * 94.98603 * 3 2 1 13 13 C 1.50702 * 109.47484 * 89.99563 * 12 3 2 14 14 O 1.21289 * 119.99758 * 0.02562 * 13 12 3 15 15 N 1.34775 * 119.99752 * 179.97438 * 13 12 3 16 16 C 1.40044 * 119.99710 * 185.83346 * 15 13 12 17 17 C 1.38810 * 120.08035 * 24.69095 * 16 15 13 18 18 C 1.38140 * 119.95786 * 179.97438 * 17 16 15 19 19 C 1.38289 * 120.10984 * 0.02562 * 18 17 16 20 20 C 1.38263 * 120.15591 * 359.97438 * 19 18 17 21 21 C 1.38311 * 120.04725 * 0.02562 * 20 19 18 22 22 F 1.35095 * 120.05782 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47019 * 59.99607 * 1 2 3 24 24 H 1.09000 * 109.47553 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47309 * 300.00343 * 1 2 3 26 26 H 1.09004 * 109.47385 * 240.00205 * 2 1 3 27 27 H 1.09001 * 109.47019 * 120.00393 * 2 1 3 28 28 H 0.97001 * 119.99661 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46633 * 329.99478 * 12 3 2 30 30 H 1.08999 * 109.47236 * 209.99996 * 12 3 2 31 31 H 0.97001 * 120.00333 * 5.83637 * 15 13 12 32 32 H 1.08006 * 120.02025 * 359.96182 * 17 16 15 33 33 H 1.07992 * 119.94517 * 180.02562 * 18 17 16 34 34 H 1.07992 * 119.92187 * 179.97438 * 19 18 17 35 35 H 1.08000 * 119.97839 * 179.75033 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1494 2.0611 -1.1814 5 1 1.5610 1.7713 -2.0394 6 6 3.0389 3.1226 -1.2762 7 7 3.8275 3.4130 -0.2632 8 14 3.1166 4.1390 -2.8416 9 1 2.1613 5.2717 -2.7443 10 1 4.4931 4.6664 -3.0216 11 1 2.7572 3.2867 -4.0035 12 6 2.3664 2.0351 1.2639 13 6 3.8203 1.7874 1.5740 14 8 4.4990 1.1298 0.8137 15 7 4.3664 2.2974 2.6956 16 6 5.7425 2.1722 2.9237 17 6 6.6133 2.0123 1.8547 18 6 7.9702 1.8896 2.0826 19 6 8.4627 1.9252 3.3743 20 6 7.5995 2.0844 4.4426 21 6 6.2397 2.2079 4.2218 22 9 5.3960 2.3628 5.2655 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.4488 4.1550 -0.3294 29 1 1.7496 1.6283 2.0653 30 1 2.1906 3.1074 1.1788 31 1 3.8065 2.7512 3.3447 32 1 6.2301 1.9836 0.8453 33 1 8.6475 1.7656 1.2507 34 1 9.5240 1.8286 3.5491 35 1 7.9868 2.1078 5.4505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:08 Heat of formation + Delta-G solvation = -38.367418 kcal Electronic energy + Delta-G solvation = -20521.963119 eV Core-core repulsion = 17242.020966 eV Total energy + Delta-G solvation = -3279.942153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.45 seconds Orbital eigenvalues (eV) -49.82117 -40.99368 -39.14259 -37.29161 -35.28580 -33.77360 -31.59774 -31.22168 -30.28112 -28.28089 -25.53069 -24.13910 -23.32111 -22.29275 -21.06790 -19.25518 -18.59683 -17.81984 -17.68094 -17.09786 -16.71297 -16.38176 -15.79235 -15.68615 -15.44513 -15.13081 -14.70927 -14.52203 -14.16148 -13.89406 -13.45158 -13.27273 -13.05789 -12.80217 -12.73376 -12.62734 -12.34978 -12.30414 -12.12024 -11.83254 -11.55060 -11.24670 -10.71467 -10.22942 -9.70116 -8.83132 -8.71082 -7.88733 -5.30192 0.25134 0.40047 1.45627 1.47541 1.54923 2.27287 2.41166 2.60146 2.89301 3.30872 3.35348 3.63910 3.90689 4.10399 4.38384 4.40515 4.42008 4.53917 4.65591 4.80143 4.80844 4.96142 5.06040 5.14373 5.23140 5.27163 5.27675 5.42929 5.57609 5.60976 5.64305 5.75056 6.18243 6.31804 6.79705 7.15726 7.75516 7.94783 8.27469 9.17724 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.006653 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.653560 B = 4207.899022 C = 5036.188220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.256 4.256 5 H 0.070 0.930 6 C -0.043 4.043 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.283 1.283 10 H -0.302 1.302 11 H -0.277 1.277 12 C 0.175 3.825 13 C 0.537 3.463 14 O -0.549 6.549 15 N -0.680 5.680 16 C 0.126 3.874 17 C -0.135 4.135 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.126 4.126 21 C 0.033 3.967 22 F -0.145 7.145 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.245 0.755 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.410 0.590 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.168 0.832 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 -1.837 9.873 10.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 N -0.312 5.312 4 C -0.386 4.386 5 H 0.087 0.913 6 C -0.238 4.238 7 N -0.564 5.564 8 Si 0.802 3.198 9 H -0.209 1.209 10 H -0.229 1.229 11 H -0.203 1.203 12 C 0.045 3.955 13 C 0.326 3.674 14 O -0.425 6.425 15 N -0.325 5.325 16 C 0.028 3.972 17 C -0.156 4.156 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.145 4.145 21 C 0.010 3.990 22 F -0.124 7.124 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.246 0.754 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.186 0.814 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.406 -2.203 9.250 10.480 hybrid contribution -0.245 1.027 -0.673 1.252 sum 4.162 -1.176 8.577 9.605 Atomic orbital electron populations 1.22122 0.96480 1.01127 1.01175 1.20916 0.93994 0.84839 0.98810 1.43925 1.74752 1.10154 1.02330 1.19401 1.16989 1.11064 0.91100 0.91258 1.25614 0.96186 1.01774 1.00183 1.69547 1.25183 1.30300 1.31392 0.85195 0.75964 0.78600 0.80067 1.20931 1.22942 1.20263 1.20428 0.88487 0.99001 0.87614 1.22252 0.92734 0.75107 0.77334 1.90423 1.63633 1.41223 1.47178 1.43822 1.05581 1.58658 1.24454 1.18200 0.85464 1.01077 0.92492 1.21416 0.93789 1.01365 0.99055 1.21383 0.93828 0.99044 0.98846 1.21271 1.01283 1.00350 0.90610 1.21277 0.89621 1.01409 1.02217 1.17610 0.89354 1.10602 0.81397 1.91418 1.71164 1.93867 1.55905 0.94080 0.91207 0.92998 0.95171 0.93995 0.94475 0.91408 0.90035 0.75420 0.86170 0.84171 0.81416 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 10.21 71.98 0.74 -4.27 16 2 C 0.14 5.84 6.39 86.38 0.55 6.39 16 3 N -0.59 -29.04 2.03 -706.34 -1.43 -30.47 16 4 C -0.26 -13.80 9.67 84.04 0.81 -12.99 16 5 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 6 C -0.04 -2.32 5.22 84.86 0.44 -1.88 16 7 N -0.92 -51.13 7.99 21.65 0.17 -50.96 16 8 Si 0.97 45.37 29.56 68.60 2.03 47.40 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 C 0.18 7.97 5.41 85.63 0.46 8.44 16 13 C 0.54 25.49 5.40 87.66 0.47 25.96 16 14 O -0.55 -30.48 12.76 -3.06 -0.04 -30.52 16 15 N -0.68 -27.48 5.31 -303.32 -1.61 -29.09 16 16 C 0.13 4.90 6.44 38.16 0.25 5.14 16 17 C -0.14 -5.54 8.72 22.38 0.20 -5.34 16 18 C -0.11 -3.47 10.04 22.26 0.22 -3.25 16 19 C -0.12 -2.77 10.04 22.29 0.22 -2.55 16 20 C -0.13 -3.16 10.02 22.29 0.22 -2.94 16 21 C 0.03 1.05 7.31 22.48 0.16 1.21 16 22 F -0.14 -4.46 16.81 44.97 0.76 -3.70 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 1.32 8.08 -2.38 -0.02 1.30 16 27 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 28 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 30 H 0.08 3.98 6.83 -2.39 -0.02 3.96 16 31 H 0.41 14.13 8.46 -92.71 -0.78 13.35 16 32 H 0.12 6.11 5.79 -2.91 -0.02 6.10 16 33 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -66.54 300.66 4.96 -61.58 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.32 Total: 21.83 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 4.76 Total: 13.92 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -2.87 Total: -110.52 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.04 Total: -30.52 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.76 Total: -3.70 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.54 4.96 -61.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.214 kcal (2) G-P(sol) polarization free energy of solvation -66.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.45 seconds