Wall clock time and date at job start Mon Mar 30 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 C 1.53001 * 109.47027 * 270.27259 * 7 6 5 9 9 N 1.46502 * 109.47031 * 180.02562 * 8 7 6 10 10 C 1.34773 * 120.00110 * 180.02562 * 9 8 7 11 11 O 1.21439 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.48829 * 120.00191 * 179.97438 * 10 9 8 13 13 O 1.21507 * 119.99864 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00191 * 179.97438 * 12 10 9 15 15 C 1.36122 * 120.00175 * 179.97438 * 14 12 10 16 16 H 1.08003 * 119.99988 * 0.02562 * 15 14 12 17 17 C 1.39582 * 120.00324 * 179.97438 * 15 14 12 18 18 N 1.31016 * 119.99862 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00331 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47215 * 59.99847 * 19 17 15 21 21 H 1.48501 * 109.47249 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46816 * 300.00265 * 19 17 15 23 23 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 24 24 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 25 25 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 26 26 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 27 27 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47481 * 30.27445 * 7 6 5 29 29 H 1.09006 * 109.46847 * 150.28064 * 7 6 5 30 30 H 1.08999 * 109.47577 * 300.00557 * 8 7 6 31 31 H 1.08998 * 109.46940 * 60.00867 * 8 7 6 32 32 H 0.96998 * 119.99840 * 359.97438 * 9 8 7 33 33 H 0.96998 * 120.00050 * 359.97438 * 14 12 10 34 34 H 0.97001 * 120.00031 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 6 1.6451 -3.0062 -1.4416 9 7 1.1931 -4.3997 -1.4414 10 6 0.9861 -5.0412 -2.6084 11 8 1.1748 -4.4643 -3.6602 12 6 0.5274 -6.4570 -2.6082 13 8 0.3399 -7.0348 -1.5559 14 7 0.3200 -7.0984 -3.7753 15 6 -0.0991 -8.3935 -3.7751 16 1 -0.2657 -8.9070 -2.8397 17 6 -0.3144 -9.0576 -4.9838 18 7 -0.1128 -8.4345 -6.1185 19 14 -0.8902 -10.8347 -4.9836 20 1 -2.1960 -10.9319 -4.2832 21 1 -1.0424 -11.3059 -6.3835 22 1 0.1110 -11.6792 -4.2836 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 1.9613 2.1345 -0.0004 27 1 4.4369 1.2611 0.0003 28 1 2.5363 -3.1404 0.5150 29 1 0.8430 -2.5918 0.5143 30 1 0.9107 -2.3864 -1.9559 31 1 2.6039 -2.9350 -1.9551 32 1 1.0434 -4.8609 -0.6013 33 1 0.4693 -6.6371 -4.6154 34 1 -0.2621 -8.8961 -6.9585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045136837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:58 Heat of formation + Delta-G solvation = -12.884287 kcal Electronic energy + Delta-G solvation = -19100.714818 eV Core-core repulsion = 15841.797658 eV Total energy + Delta-G solvation = -3258.917160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.27878 -39.48557 -37.28971 -35.38770 -34.26033 -34.14826 -31.95282 -31.34679 -28.39348 -27.19802 -25.91425 -24.06811 -22.01969 -21.57630 -20.18025 -19.28768 -18.34026 -17.26688 -17.00133 -16.02541 -15.77924 -15.55531 -14.99327 -14.67385 -14.36937 -13.97580 -13.88907 -13.68335 -13.27134 -13.14121 -12.86464 -12.75188 -12.52691 -12.02306 -11.77443 -11.46595 -11.17689 -10.59137 -10.46002 -10.36169 -10.13121 -9.80630 -9.71709 -8.80357 -8.59327 -8.28418 -8.23661 -6.68005 -4.00423 1.80686 2.43342 2.53742 2.94076 3.15292 3.16942 3.18194 3.39069 4.03775 4.26932 4.31773 4.41060 4.56191 4.75108 4.84072 4.91380 5.08412 5.09171 5.17526 5.21410 5.38455 5.48487 5.83118 5.90181 6.06504 6.07414 6.56861 6.70172 6.94071 7.29907 7.65955 7.84675 7.93489 8.31094 8.60123 8.94728 9.30517 9.83779 10.46749 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.052301 B = 0.003113 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.236701 B = 8991.039773 C = 9065.448432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.457 5.457 3 C -0.060 4.060 4 C -0.028 4.028 5 N -0.485 5.485 6 C 0.213 3.787 7 C -0.047 4.047 8 C 0.129 3.871 9 N -0.716 5.716 10 C 0.514 3.486 11 O -0.545 6.545 12 C 0.394 3.606 13 O -0.598 6.598 14 N -0.498 5.498 15 C -0.307 4.307 16 H 0.112 0.888 17 C 0.031 3.969 18 N -0.868 5.868 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.174 0.826 27 H 0.170 0.830 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 16.220 10.555 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.140 5.140 3 C -0.193 4.193 4 C -0.176 4.176 5 N -0.203 5.203 6 C -0.050 4.050 7 C -0.086 4.086 8 C 0.004 3.996 9 N -0.371 5.371 10 C 0.299 3.701 11 O -0.422 6.422 12 C 0.178 3.822 13 O -0.487 6.487 14 N -0.132 5.132 15 C -0.437 4.437 16 H 0.130 0.870 17 C -0.176 4.176 18 N -0.506 5.506 19 Si 0.765 3.235 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.193 1.193 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.191 0.809 27 H 0.187 0.813 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.247 0.753 33 H 0.240 0.760 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.732 15.721 10.242 18.777 hybrid contribution -0.957 0.082 -0.215 0.984 sum -0.225 15.804 10.027 18.718 Atomic orbital electron populations 1.22116 0.76512 1.04763 1.04104 1.45317 1.07684 1.06649 1.54368 1.22703 0.91397 0.92499 1.12732 1.22321 0.96457 0.91165 1.07685 1.70271 1.18392 1.12075 1.19608 1.22926 0.85829 0.90427 1.05822 1.20172 1.02800 0.87636 0.97979 1.21169 1.00920 0.82471 0.95065 1.45596 1.69182 1.12591 1.09690 1.20694 0.77454 0.88656 0.83325 1.90698 1.51325 1.68843 1.31305 1.18915 0.90853 0.86839 0.85598 1.90579 1.59635 1.67869 1.30615 1.41560 1.52202 1.12032 1.07403 1.19843 1.41639 0.87290 0.94943 0.86977 1.25596 0.96420 1.01196 0.94369 1.69479 1.44433 1.38549 0.98177 0.85773 0.79618 0.80559 0.77506 1.19372 1.20588 1.19337 0.90102 0.89178 0.89535 0.80879 0.81276 0.87658 0.89550 0.91845 0.90660 0.75349 0.75980 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 10.97 59.85 0.66 1.06 16 2 N -0.46 -4.42 3.15 -121.27 -0.38 -4.80 16 3 C -0.06 -0.56 11.58 -16.56 -0.19 -0.75 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 5 N -0.48 -6.75 11.25 -10.81 -0.12 -6.87 16 6 C 0.21 2.55 7.16 -155.42 -1.11 1.44 16 7 C -0.05 -0.49 5.64 -27.88 -0.16 -0.65 16 8 C 0.13 1.78 5.66 -4.04 -0.02 1.76 16 9 N -0.72 -11.86 5.55 -60.93 -0.34 -12.20 16 10 C 0.51 11.11 7.87 -11.88 -0.09 11.02 16 11 O -0.55 -12.88 16.47 5.42 0.09 -12.79 16 12 C 0.39 9.85 7.82 -11.88 -0.09 9.75 16 13 O -0.60 -15.79 16.03 5.36 0.09 -15.71 16 14 N -0.50 -13.29 5.25 -11.59 -0.06 -13.35 16 15 C -0.31 -8.41 9.67 -15.15 -0.15 -8.56 16 16 H 0.11 3.12 7.15 -52.48 -0.38 2.75 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -23.24 13.03 55.53 0.72 -22.51 16 19 Si 0.94 19.98 29.56 -169.99 -5.02 14.95 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.09 0.46 7.05 -51.93 -0.37 0.09 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 0.71 7.07 -51.93 -0.37 0.34 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.41 6.19 7.93 -40.82 -0.32 5.87 16 33 H 0.40 10.91 7.35 -40.82 -0.30 10.61 16 34 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -33.84 307.01 -5.69 -39.53 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -3.83 Total: 13.86 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -1.47 Total: 15.26 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.18 Total: -59.74 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: 0.18 Total: -28.50 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.84 -5.69 -39.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045136837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.650 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds