Wall clock time and date at job start Mon Mar 30 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 C 1.53001 * 109.47027 * 270.27259 * 7 6 5 9 9 N 1.46502 * 109.47031 * 180.02562 * 8 7 6 10 10 C 1.34773 * 120.00110 * 180.02562 * 9 8 7 11 11 O 1.21439 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.48829 * 120.00191 * 179.97438 * 10 9 8 13 13 O 1.21507 * 119.99864 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00191 * 179.97438 * 12 10 9 15 15 C 1.36122 * 120.00175 * 179.97438 * 14 12 10 16 16 H 1.08003 * 119.99988 * 0.02562 * 15 14 12 17 17 C 1.39582 * 120.00324 * 179.97438 * 15 14 12 18 18 N 1.31016 * 119.99862 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00331 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47215 * 59.99847 * 19 17 15 21 21 H 1.48501 * 109.47249 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46816 * 300.00265 * 19 17 15 23 23 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 24 24 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 25 25 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 26 26 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 27 27 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47481 * 30.27445 * 7 6 5 29 29 H 1.09006 * 109.46847 * 150.28064 * 7 6 5 30 30 H 1.08999 * 109.47577 * 300.00557 * 8 7 6 31 31 H 1.08998 * 109.46940 * 60.00867 * 8 7 6 32 32 H 0.96998 * 119.99840 * 359.97438 * 9 8 7 33 33 H 0.96998 * 120.00050 * 359.97438 * 14 12 10 34 34 H 0.97001 * 120.00031 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 6 1.6451 -3.0062 -1.4416 9 7 1.1931 -4.3997 -1.4414 10 6 0.9861 -5.0412 -2.6084 11 8 1.1748 -4.4643 -3.6602 12 6 0.5274 -6.4570 -2.6082 13 8 0.3399 -7.0348 -1.5559 14 7 0.3200 -7.0984 -3.7753 15 6 -0.0991 -8.3935 -3.7751 16 1 -0.2657 -8.9070 -2.8397 17 6 -0.3144 -9.0576 -4.9838 18 7 -0.1128 -8.4345 -6.1185 19 14 -0.8902 -10.8347 -4.9836 20 1 -2.1960 -10.9319 -4.2832 21 1 -1.0424 -11.3059 -6.3835 22 1 0.1110 -11.6792 -4.2836 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 1.9613 2.1345 -0.0004 27 1 4.4369 1.2611 0.0003 28 1 2.5363 -3.1404 0.5150 29 1 0.8430 -2.5918 0.5143 30 1 0.9107 -2.3864 -1.9559 31 1 2.6039 -2.9350 -1.9551 32 1 1.0434 -4.8609 -0.6013 33 1 0.4693 -6.6371 -4.6154 34 1 -0.2621 -8.8961 -6.9585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045136837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:58 Heat of formation + Delta-G solvation = -38.698174 kcal Electronic energy + Delta-G solvation = -19101.834192 eV Core-core repulsion = 15841.797658 eV Total energy + Delta-G solvation = -3260.036534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.04618 -41.28429 -39.18380 -36.88187 -36.10247 -34.91840 -33.53133 -32.95921 -29.39068 -27.97111 -27.63107 -25.50193 -23.54750 -22.32694 -21.47330 -20.63376 -20.27495 -18.80909 -18.04126 -17.53493 -16.94718 -16.89281 -16.60445 -15.91554 -15.86575 -15.70297 -15.05019 -14.72321 -14.57573 -14.21050 -13.93895 -13.86021 -13.65194 -13.41203 -12.99254 -12.95389 -12.58155 -12.50842 -12.31280 -12.11469 -11.64496 -10.96713 -10.56385 -10.29860 -10.26864 -10.25456 -9.35248 -8.65326 -6.10316 0.59390 1.03228 1.41928 1.50081 1.54616 1.72666 1.95822 2.16011 2.30840 2.37381 3.16123 3.21430 3.54802 3.82596 3.84452 3.97881 4.03761 4.10588 4.33273 4.44418 4.58807 4.65506 4.68417 4.87673 4.92496 5.22737 5.25888 5.34454 5.68082 5.83747 6.14020 6.22606 6.38669 6.81261 7.00987 7.13858 7.28098 7.79939 8.50295 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.052301 B = 0.003113 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.236701 B = 8991.039773 C = 9065.448432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.456 5.456 3 C -0.045 4.045 4 C -0.061 4.061 5 N -0.528 5.528 6 C 0.190 3.810 7 C -0.034 4.034 8 C 0.134 3.866 9 N -0.690 5.690 10 C 0.520 3.480 11 O -0.568 6.568 12 C 0.391 3.609 13 O -0.614 6.614 14 N -0.511 5.511 15 C -0.346 4.346 16 H 0.101 0.899 17 C -0.005 4.005 18 N -0.897 5.897 19 Si 1.010 2.990 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.264 1.264 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.211 0.789 27 H 0.183 0.817 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.420 0.580 33 H 0.400 0.600 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 16.959 11.451 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.138 5.138 3 C -0.178 4.178 4 C -0.208 4.208 5 N -0.248 5.248 6 C -0.073 4.073 7 C -0.073 4.073 8 C 0.009 3.991 9 N -0.344 5.344 10 C 0.303 3.697 11 O -0.447 6.447 12 C 0.176 3.824 13 O -0.504 6.504 14 N -0.145 5.145 15 C -0.475 4.475 16 H 0.119 0.881 17 C -0.209 4.209 18 N -0.534 5.534 19 Si 0.831 3.169 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.189 1.189 23 H 0.101 0.899 24 H 0.118 0.882 25 H 0.131 0.869 26 H 0.228 0.772 27 H 0.201 0.799 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.258 0.742 33 H 0.235 0.765 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.317 16.484 11.177 19.918 hybrid contribution -0.602 0.013 -0.429 0.739 sum -0.919 16.497 10.748 19.710 Atomic orbital electron populations 1.22425 0.74270 1.06683 1.04844 1.45562 1.09065 1.06072 1.53098 1.23292 0.90669 0.93862 1.10011 1.22748 0.98259 0.90653 1.09183 1.70185 1.20018 1.13796 1.20786 1.22956 0.85959 0.91226 1.07155 1.20070 1.04430 0.87235 0.95597 1.21265 0.99818 0.80456 0.97516 1.45486 1.66874 1.13562 1.08472 1.20093 0.77844 0.87368 0.84420 1.90693 1.52756 1.68860 1.32400 1.19539 0.89727 0.88208 0.84950 1.90549 1.59998 1.68840 1.30988 1.41658 1.52964 1.12199 1.07647 1.19967 1.44188 0.88079 0.95298 0.88130 1.26555 0.95528 1.05429 0.93423 1.69549 1.44622 1.40398 0.98862 0.84749 0.79199 0.74837 0.78125 1.18686 1.19223 1.18872 0.89875 0.88159 0.86910 0.77221 0.79949 0.87608 0.86579 0.91361 0.92570 0.74173 0.76519 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.97 127.77 1.40 1.92 16 2 N -0.46 -7.73 3.15 -537.60 -1.69 -9.43 16 3 C -0.04 -0.71 11.58 83.09 0.96 0.25 16 4 C -0.06 -1.31 11.87 83.52 0.99 -0.31 16 5 N -0.53 -14.53 11.25 -188.13 -2.12 -16.64 16 6 C 0.19 4.31 7.16 138.13 0.99 5.30 16 7 C -0.03 -0.67 5.64 29.85 0.17 -0.50 16 8 C 0.13 3.56 5.66 86.38 0.49 4.05 16 9 N -0.69 -22.21 5.55 -465.01 -2.58 -24.79 16 10 C 0.52 22.46 7.87 87.08 0.69 23.15 16 11 O -0.57 -27.04 16.47 -3.52 -0.06 -27.10 16 12 C 0.39 19.81 7.82 87.08 0.68 20.49 16 13 O -0.61 -32.61 16.03 -3.74 -0.06 -32.67 16 14 N -0.51 -27.95 5.25 -308.87 -1.62 -29.57 16 15 C -0.35 -19.32 9.67 84.35 0.82 -18.51 16 16 H 0.10 5.73 7.15 -2.91 -0.02 5.71 16 17 C -0.01 -0.26 5.51 85.14 0.47 0.21 16 18 N -0.90 -48.22 13.03 21.76 0.28 -47.93 16 19 Si 1.01 40.47 29.56 68.60 2.03 42.50 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.10 0.68 7.05 -2.39 -0.02 0.66 16 25 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 27 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.12 1.56 7.07 -2.38 -0.02 1.55 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.42 12.06 7.93 -92.71 -0.74 11.33 16 33 H 0.40 22.24 7.35 -92.71 -0.68 21.56 16 34 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 Total: -1.00 -74.16 307.01 1.57 -72.59 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.26 Total: 37.02 kcal Atomic # 6 Polarization: 28.38 SS G_CDS: 7.65 Total: 36.03 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -7.73 Total: -128.36 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -0.12 Total: -59.77 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -74.16 1.57 -72.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045136837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.896 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds