Wall clock time and date at job start Mon Mar 30 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34510 * 125.78984 * 2 1 4 4 C 1.41385 * 106.84409 * 179.74966 * 3 2 1 5 5 C 1.34517 * 106.83850 * 0.38066 * 4 3 2 6 6 C 1.50700 * 125.79317 * 179.88749 * 5 4 3 7 7 H 1.08999 * 109.46711 * 339.71634 * 6 5 4 8 8 C 1.52999 * 109.47217 * 99.71248 * 6 5 4 9 9 N 1.46499 * 109.47223 * 219.71385 * 6 5 4 10 10 C 1.34777 * 120.00065 * 154.99604 * 9 6 5 11 11 O 1.21443 * 119.99547 * 0.02562 * 10 9 6 12 12 C 1.48826 * 120.00107 * 179.97438 * 10 9 6 13 13 O 1.21503 * 119.99912 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99709 * 180.27489 * 12 10 9 15 15 C 1.36124 * 119.99618 * 179.72255 * 14 12 10 16 16 H 1.08002 * 119.99883 * 0.02562 * 15 14 12 17 17 C 1.39585 * 119.99962 * 180.02562 * 15 14 12 18 18 N 1.31014 * 120.00014 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47042 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47152 * 119.99808 * 19 17 15 22 22 H 1.48493 * 109.47284 * 240.00179 * 19 17 15 23 23 O 1.34303 * 125.78887 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47364 * 299.99556 * 1 2 3 26 26 H 1.09003 * 109.47463 * 59.99688 * 1 2 3 27 27 H 1.08002 * 126.58185 * 0.02562 * 3 2 1 28 28 H 1.07997 * 126.58369 * 180.23467 * 4 3 2 29 29 H 1.09000 * 109.47077 * 59.99999 * 8 6 5 30 30 H 1.08995 * 109.47036 * 180.02562 * 8 6 5 31 31 H 1.09005 * 109.46845 * 300.00340 * 8 6 5 32 32 H 0.97000 * 119.99795 * 334.99980 * 9 6 5 33 33 H 0.97000 * 120.00483 * 359.73004 * 14 12 10 34 34 H 0.97000 * 120.00583 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5814 -0.7122 0.0006 6 6 4.7706 -1.6379 0.0015 7 1 5.6507 -1.0990 -0.3494 8 6 5.0182 -2.1486 1.4224 9 7 4.5066 -2.7729 -0.8863 10 6 5.5329 -3.4443 -1.4452 11 8 6.6766 -3.1085 -1.2124 12 6 5.2648 -4.5977 -2.3467 13 8 4.1206 -4.9338 -2.5792 14 7 6.2913 -5.2724 -2.9011 15 6 6.0461 -6.3309 -3.7212 16 1 5.0290 -6.6297 -3.9278 17 6 7.1092 -7.0302 -4.2950 18 7 8.3431 -6.6680 -4.0439 19 14 6.7729 -8.4822 -5.4209 20 1 5.3068 -8.6852 -5.5424 21 1 7.3475 -8.2113 -6.7632 22 1 7.3968 -9.7041 -4.8527 23 8 2.2924 -1.0894 0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.9665 2.1204 0.0004 28 1 4.5212 1.2433 0.0111 29 1 4.1381 -2.6874 1.7733 30 1 5.8786 -2.8178 1.4231 31 1 5.2146 -1.3041 2.0829 32 1 3.5931 -3.0412 -1.0719 33 1 7.2048 -5.0039 -2.7157 34 1 9.0819 -7.1541 -4.4424 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049223405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:59 Heat of formation + Delta-G solvation = -64.773402 kcal Electronic energy + Delta-G solvation = -19518.852571 eV Core-core repulsion = 16225.392579 eV Total energy + Delta-G solvation = -3293.459992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.70341 -39.56771 -37.37499 -35.48957 -34.21141 -33.27262 -32.04538 -31.39399 -30.20332 -26.57835 -25.92232 -23.76392 -21.91832 -21.83687 -20.08444 -19.46051 -18.39071 -17.53586 -16.33779 -16.19994 -15.91435 -15.09918 -14.76883 -14.59636 -14.10811 -13.79886 -13.60076 -13.28746 -13.10731 -13.00615 -12.88632 -12.80270 -12.26096 -12.13797 -11.83964 -11.75560 -11.41143 -11.21792 -10.53101 -10.41592 -10.36520 -9.95623 -9.74000 -8.91704 -8.42175 -8.25351 -8.23390 -6.68129 -4.00129 1.58986 2.39162 2.49481 2.76227 3.13528 3.15944 3.22397 3.38882 4.05646 4.25366 4.42528 4.78149 4.91317 4.99547 5.10396 5.15765 5.23325 5.24302 5.29180 5.48445 5.63137 5.68343 5.82682 5.90600 6.01263 6.04884 6.21848 6.42071 6.66185 7.10835 7.30359 7.65658 7.84678 8.30249 8.57488 8.94879 9.30500 9.83999 10.46752 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035008 B = 0.003865 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.627011 B = 7242.299182 C = 7760.257526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.013 4.013 3 C -0.214 4.214 4 C -0.197 4.197 5 C -0.016 4.016 6 C 0.228 3.772 7 H 0.116 0.884 8 C -0.162 4.162 9 N -0.712 5.712 10 C 0.517 3.483 11 O -0.545 6.545 12 C 0.394 3.606 13 O -0.596 6.596 14 N -0.498 5.498 15 C -0.305 4.305 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.868 5.868 19 Si 0.939 3.061 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 O -0.168 6.168 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.414 0.586 33 H 0.405 0.595 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 12.521 8.572 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.233 4.233 4 C -0.216 4.216 5 C -0.067 4.067 6 C 0.123 3.877 7 H 0.133 0.867 8 C -0.221 4.221 9 N -0.366 5.366 10 C 0.302 3.698 11 O -0.422 6.422 12 C 0.178 3.822 13 O -0.484 6.484 14 N -0.132 5.132 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.506 5.506 19 Si 0.764 3.236 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.203 1.203 23 O -0.064 6.064 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.340 12.172 8.529 17.554 hybrid contribution 0.161 -0.311 -0.476 0.590 sum -9.179 11.861 8.054 17.023 Atomic orbital electron populations 1.20309 0.85138 1.04206 1.03399 1.22476 0.94059 0.84170 1.05623 1.21515 0.92548 0.99369 1.09849 1.21536 0.98415 0.93413 1.08269 1.22499 0.82913 0.94566 1.06692 1.19432 0.91454 0.85199 0.91637 0.86667 1.22231 1.03163 1.02103 0.94560 1.45746 1.10985 1.31761 1.48130 1.20735 0.84483 0.84017 0.80555 1.90687 1.21350 1.67978 1.62145 1.18887 0.86482 0.87741 0.89060 1.90592 1.20718 1.70479 1.66635 1.41565 1.08641 1.25383 1.37649 1.19946 0.95612 1.05800 1.22206 0.86891 1.25593 0.94367 0.99555 0.98095 1.69489 0.98831 1.40243 1.42044 0.85662 0.79311 0.79618 0.78999 1.18695 1.20274 1.20267 1.83970 1.16109 1.35085 1.71244 0.90413 0.89787 0.89680 0.83473 0.83234 0.91922 0.90631 0.91270 0.74952 0.75977 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.00 0.38 -0.19 16 2 C -0.01 -0.15 7.32 -35.63 -0.26 -0.41 16 3 C -0.21 -2.37 10.81 -39.70 -0.43 -2.80 16 4 C -0.20 -2.39 10.80 -39.70 -0.43 -2.82 16 5 C -0.02 -0.22 6.12 -35.62 -0.22 -0.44 16 6 C 0.23 3.36 3.03 -69.08 -0.21 3.15 16 7 H 0.12 1.71 7.57 -51.93 -0.39 1.31 16 8 C -0.16 -2.11 9.47 37.16 0.35 -1.76 16 9 N -0.71 -12.84 5.06 -55.56 -0.28 -13.12 16 10 C 0.52 11.32 7.83 -11.88 -0.09 11.22 16 11 O -0.54 -12.51 16.13 5.42 0.09 -12.42 16 12 C 0.39 10.04 7.82 -11.88 -0.09 9.95 16 13 O -0.60 -16.25 16.03 5.36 0.09 -16.16 16 14 N -0.50 -13.37 5.25 -11.59 -0.06 -13.43 16 15 C -0.30 -8.43 9.67 -15.14 -0.15 -8.58 16 16 H 0.11 3.20 7.15 -52.49 -0.38 2.82 16 17 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -23.22 13.03 55.53 0.72 -22.49 16 19 Si 0.94 20.07 29.56 -169.99 -5.02 15.05 16 20 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 O -0.17 -2.37 10.31 5.69 0.06 -2.31 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.41 7.48 7.78 -40.82 -0.32 7.16 16 33 H 0.40 10.89 7.35 -40.82 -0.30 10.59 16 34 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -31.25 308.59 -4.91 -36.16 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -3.90 Total: 16.05 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.25 Total: 8.02 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.38 Total: -49.04 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: 0.23 Total: -30.89 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.25 -4.91 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049223405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.610 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds