Wall clock time and date at job start Mon Mar 30 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34510 * 125.78984 * 2 1 4 4 C 1.41385 * 106.84409 * 179.74966 * 3 2 1 5 5 C 1.34517 * 106.83850 * 0.38066 * 4 3 2 6 6 C 1.50700 * 125.79317 * 179.88749 * 5 4 3 7 7 H 1.08999 * 109.46711 * 339.71634 * 6 5 4 8 8 C 1.52999 * 109.47217 * 99.71248 * 6 5 4 9 9 N 1.46499 * 109.47223 * 219.71385 * 6 5 4 10 10 C 1.34777 * 120.00065 * 154.99604 * 9 6 5 11 11 O 1.21443 * 119.99547 * 0.02562 * 10 9 6 12 12 C 1.48826 * 120.00107 * 179.97438 * 10 9 6 13 13 O 1.21503 * 119.99912 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99709 * 180.27489 * 12 10 9 15 15 C 1.36124 * 119.99618 * 179.72255 * 14 12 10 16 16 H 1.08002 * 119.99883 * 0.02562 * 15 14 12 17 17 C 1.39585 * 119.99962 * 180.02562 * 15 14 12 18 18 N 1.31014 * 120.00014 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47042 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47152 * 119.99808 * 19 17 15 22 22 H 1.48493 * 109.47284 * 240.00179 * 19 17 15 23 23 O 1.34303 * 125.78887 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47364 * 299.99556 * 1 2 3 26 26 H 1.09003 * 109.47463 * 59.99688 * 1 2 3 27 27 H 1.08002 * 126.58185 * 0.02562 * 3 2 1 28 28 H 1.07997 * 126.58369 * 180.23467 * 4 3 2 29 29 H 1.09000 * 109.47077 * 59.99999 * 8 6 5 30 30 H 1.08995 * 109.47036 * 180.02562 * 8 6 5 31 31 H 1.09005 * 109.46845 * 300.00340 * 8 6 5 32 32 H 0.97000 * 119.99795 * 334.99980 * 9 6 5 33 33 H 0.97000 * 120.00483 * 359.73004 * 14 12 10 34 34 H 0.97000 * 120.00583 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5814 -0.7122 0.0006 6 6 4.7706 -1.6379 0.0015 7 1 5.6507 -1.0990 -0.3494 8 6 5.0182 -2.1486 1.4224 9 7 4.5066 -2.7729 -0.8863 10 6 5.5329 -3.4443 -1.4452 11 8 6.6766 -3.1085 -1.2124 12 6 5.2648 -4.5977 -2.3467 13 8 4.1206 -4.9338 -2.5792 14 7 6.2913 -5.2724 -2.9011 15 6 6.0461 -6.3309 -3.7212 16 1 5.0290 -6.6297 -3.9278 17 6 7.1092 -7.0302 -4.2950 18 7 8.3431 -6.6680 -4.0439 19 14 6.7729 -8.4822 -5.4209 20 1 5.3068 -8.6852 -5.5424 21 1 7.3475 -8.2113 -6.7632 22 1 7.3968 -9.7041 -4.8527 23 8 2.2924 -1.0894 0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.9665 2.1204 0.0004 28 1 4.5212 1.2433 0.0111 29 1 4.1381 -2.6874 1.7733 30 1 5.8786 -2.8178 1.4231 31 1 5.2146 -1.3041 2.0829 32 1 3.5931 -3.0412 -1.0719 33 1 7.2048 -5.0039 -2.7157 34 1 9.0819 -7.1541 -4.4424 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049223405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:59 Heat of formation + Delta-G solvation = -87.221722 kcal Electronic energy + Delta-G solvation = -19519.826003 eV Core-core repulsion = 16225.392579 eV Total energy + Delta-G solvation = -3294.433424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.64821 -41.36252 -39.28660 -37.01352 -36.18456 -34.18027 -33.55180 -33.01177 -31.33365 -27.93604 -27.42416 -25.36483 -23.22955 -22.85755 -21.20313 -21.05507 -20.41905 -19.16335 -17.79756 -17.53419 -17.23429 -16.76787 -16.55706 -16.01150 -15.76826 -15.18627 -14.96368 -14.66762 -14.38470 -13.96589 -13.77857 -13.76596 -13.69849 -13.56933 -13.12130 -12.98405 -12.71442 -12.58296 -12.50978 -12.29817 -12.08620 -11.69367 -10.87303 -10.42557 -10.29698 -10.28799 -9.28249 -8.67793 -6.12602 0.52723 0.64540 1.40616 1.45309 1.52618 1.59741 1.78434 1.90288 2.28653 2.33725 3.13158 3.21343 3.44882 3.91867 3.96695 4.05226 4.12628 4.16765 4.54619 4.58870 4.71153 4.74289 4.84000 4.85511 5.00706 5.10377 5.21709 5.24023 5.25153 5.61309 5.66024 6.08267 6.16713 6.32964 6.75310 6.94851 7.24931 7.77654 8.48133 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035008 B = 0.003865 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.627011 B = 7242.299182 C = 7760.257526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 C -0.221 4.221 4 C -0.190 4.190 5 C -0.046 4.046 6 C 0.226 3.774 7 H 0.116 0.884 8 C -0.156 4.156 9 N -0.696 5.696 10 C 0.526 3.474 11 O -0.558 6.558 12 C 0.387 3.613 13 O -0.618 6.618 14 N -0.507 5.507 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.003 4.003 18 N -0.893 5.893 19 Si 1.011 2.989 20 H -0.265 1.265 21 H -0.265 1.265 22 H -0.265 1.265 23 O -0.190 6.190 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.175 0.825 28 H 0.168 0.832 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.414 0.586 33 H 0.402 0.598 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.302 13.471 8.792 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 C -0.240 4.240 4 C -0.209 4.209 5 C -0.096 4.096 6 C 0.123 3.877 7 H 0.133 0.867 8 C -0.214 4.214 9 N -0.348 5.348 10 C 0.309 3.691 11 O -0.436 6.436 12 C 0.172 3.828 13 O -0.508 6.508 14 N -0.141 5.141 15 C -0.475 4.475 16 H 0.116 0.884 17 C -0.208 4.208 18 N -0.531 5.531 19 Si 0.831 3.169 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.190 1.190 23 O -0.088 6.088 24 H 0.093 0.907 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.192 0.808 28 H 0.186 0.814 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.251 0.749 33 H 0.237 0.763 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.119 13.156 8.777 18.775 hybrid contribution 0.324 -0.482 -0.481 0.755 sum -9.794 12.673 8.296 18.038 Atomic orbital electron populations 1.20515 0.82561 1.04690 1.05287 1.23321 0.95631 0.83746 1.04289 1.21887 0.91883 1.00622 1.09570 1.21893 0.99797 0.92884 1.06340 1.22298 0.82706 0.94883 1.09681 1.19620 0.92392 0.84075 0.91638 0.86678 1.22183 1.02413 1.02854 0.93935 1.45739 1.09946 1.31792 1.47362 1.20032 0.85062 0.83504 0.80510 1.90679 1.21840 1.68300 1.62785 1.19550 0.85938 0.88345 0.88973 1.90555 1.21476 1.71382 1.67432 1.41644 1.08680 1.25710 1.38053 1.20031 0.95637 1.07459 1.24406 0.88391 1.26548 0.93730 1.01758 0.98763 1.69547 0.99682 1.41331 1.42529 0.84632 0.79060 0.76041 0.77122 1.18852 1.18988 1.18956 1.83950 1.16425 1.36520 1.71885 0.90657 0.87465 0.88052 0.80771 0.81414 0.91906 0.92195 0.88446 0.74944 0.76343 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.42 71.24 0.74 -0.21 16 2 C -0.02 -0.42 7.32 24.83 0.18 -0.24 16 3 C -0.22 -4.34 10.81 22.19 0.24 -4.10 16 4 C -0.19 -4.23 10.80 22.19 0.24 -3.99 16 5 C -0.05 -1.22 6.12 24.83 0.15 -1.06 16 6 C 0.23 6.55 3.03 44.24 0.13 6.69 16 7 H 0.12 3.34 7.57 -2.39 -0.02 3.32 16 8 C -0.16 -3.93 9.47 71.98 0.68 -3.24 16 9 N -0.70 -25.30 5.06 -448.03 -2.27 -27.57 16 10 C 0.53 23.42 7.83 87.08 0.68 24.10 16 11 O -0.56 -25.95 16.13 -3.54 -0.06 -26.00 16 12 C 0.39 20.31 7.82 87.08 0.68 20.99 16 13 O -0.62 -34.71 16.03 -3.73 -0.06 -34.77 16 14 N -0.51 -28.11 5.25 -308.87 -1.62 -29.73 16 15 C -0.35 -19.61 9.67 84.35 0.82 -18.79 16 16 H 0.10 5.74 7.15 -2.91 -0.02 5.72 16 17 C 0.00 -0.18 5.51 85.14 0.47 0.29 16 18 N -0.89 -47.91 13.03 21.76 0.28 -47.62 16 19 Si 1.01 40.82 29.56 68.60 2.03 42.85 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 O -0.19 -5.21 10.31 -2.57 -0.03 -5.24 16 24 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.10 1.89 8.14 -2.38 -0.02 1.88 16 32 H 0.41 15.18 7.78 -92.71 -0.72 14.45 16 33 H 0.40 22.34 7.35 -92.71 -0.68 21.66 16 34 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 Total: -1.00 -67.84 308.59 3.05 -64.79 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: -0.25 Total: 42.86 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 5.02 Total: 20.42 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.60 Total: -104.92 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -0.14 Total: -66.00 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -67.84 3.05 -64.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049223405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.427 kcal (2) G-P(sol) polarization free energy of solvation -67.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds