Wall clock time and date at job start Mon Mar 30 2020 04:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34515 * 125.79458 * 2 1 4 4 C 1.41378 * 106.84593 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.84200 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79162 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47230 * 19.99647 * 6 5 4 8 8 C 1.52999 * 109.47087 * 259.99632 * 6 5 4 9 9 N 1.46498 * 109.47047 * 139.99535 * 6 5 4 10 10 C 1.34777 * 119.99828 * 204.72109 * 9 6 5 11 11 O 1.21443 * 120.00325 * 0.28121 * 10 9 6 12 12 C 1.48827 * 120.00046 * 180.27751 * 10 9 6 13 13 O 1.21503 * 120.00063 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.36121 * 119.99923 * 179.97438 * 14 12 10 16 16 H 1.08002 * 120.00360 * 0.02562 * 15 14 12 17 17 C 1.39592 * 120.00132 * 180.02562 * 15 14 12 18 18 N 1.31014 * 119.99647 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00031 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.47064 * 90.00344 * 19 17 15 21 21 H 1.48501 * 109.47085 * 209.99923 * 19 17 15 22 22 H 1.48490 * 109.47554 * 329.99983 * 19 17 15 23 23 O 1.34303 * 108.41745 * 0.26038 * 5 4 3 24 24 H 1.08998 * 109.47064 * 89.99730 * 1 2 3 25 25 H 1.08999 * 109.46751 * 209.99859 * 1 2 3 26 26 H 1.08997 * 109.46787 * 329.99147 * 1 2 3 27 27 H 1.08009 * 126.57050 * 0.02562 * 3 2 1 28 28 H 1.08003 * 126.57911 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47098 * 300.00096 * 8 6 5 30 30 H 1.09003 * 109.47054 * 59.99745 * 8 6 5 31 31 H 1.08996 * 109.47245 * 179.97438 * 8 6 5 32 32 H 0.97001 * 120.00384 * 25.00556 * 9 6 5 33 33 H 0.97000 * 120.00317 * 0.02562 * 14 12 10 34 34 H 0.96996 * 120.00096 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6504 -1.0993 0.3501 8 6 5.0194 -2.1480 -1.4227 9 7 4.5058 -2.7733 0.8852 10 6 5.5318 -3.4485 1.4401 11 8 6.6757 -3.1125 1.2089 12 6 5.2631 -4.6058 2.3364 13 8 4.1187 -4.9423 2.5675 14 7 6.2891 -5.2812 2.8909 15 6 6.0432 -6.3394 3.7111 16 1 5.0260 -6.6380 3.9172 17 6 7.1059 -7.0387 4.2859 18 7 8.3399 -6.6768 4.0355 19 14 6.7684 -8.4904 5.4119 20 1 6.7081 -9.7373 4.6076 21 1 7.8567 -8.6013 6.4162 22 1 5.4723 -8.2867 6.1073 23 8 2.2925 -1.0894 -0.0073 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.9665 2.1204 0.0004 28 1 4.5213 1.2433 -0.0004 29 1 4.1396 -2.6865 -1.7747 30 1 5.2164 -1.3031 -2.0827 31 1 5.8798 -2.8171 -1.4231 32 1 3.5922 -3.0418 1.0700 33 1 7.2027 -5.0129 2.7062 34 1 9.0783 -7.1629 4.4345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049223410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:02 Heat of formation + Delta-G solvation = -64.742097 kcal Electronic energy + Delta-G solvation = -19518.782745 eV Core-core repulsion = 16225.324110 eV Total energy + Delta-G solvation = -3293.458635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.70410 -39.56671 -37.37374 -35.48894 -34.21036 -33.27574 -32.04550 -31.39392 -30.20215 -26.57820 -25.92073 -23.76269 -21.92081 -21.83717 -20.08444 -19.45941 -18.39000 -17.53507 -16.33978 -16.20164 -15.91290 -15.10011 -14.76733 -14.59234 -14.11040 -13.79416 -13.59272 -13.31189 -13.11045 -12.99777 -12.88702 -12.79650 -12.26032 -12.13751 -11.83023 -11.74977 -11.41112 -11.19877 -10.55282 -10.44259 -10.36114 -9.95965 -9.72577 -8.91580 -8.42432 -8.25241 -8.23323 -6.68038 -4.00031 1.58995 2.39473 2.49572 2.75915 3.14583 3.15702 3.21117 3.38868 4.05612 4.25459 4.42494 4.77154 4.91245 4.99629 5.10578 5.15958 5.23297 5.24560 5.29675 5.48700 5.62799 5.68280 5.82499 5.90713 6.01062 6.04978 6.21860 6.42026 6.66274 7.10716 7.30288 7.65615 7.84557 8.30354 8.57574 8.94849 9.30509 9.84138 10.46799 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035003 B = 0.003865 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.736766 B = 7242.826706 C = 7760.557750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.013 4.013 3 C -0.213 4.213 4 C -0.197 4.197 5 C -0.016 4.016 6 C 0.228 3.772 7 H 0.116 0.884 8 C -0.162 4.162 9 N -0.712 5.712 10 C 0.517 3.483 11 O -0.545 6.545 12 C 0.394 3.606 13 O -0.596 6.596 14 N -0.498 5.498 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.868 5.868 19 Si 0.939 3.061 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.265 1.265 23 O -0.168 6.168 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.414 0.586 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 12.542 -8.519 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.232 4.232 4 C -0.217 4.217 5 C -0.066 4.066 6 C 0.123 3.877 7 H 0.133 0.867 8 C -0.221 4.221 9 N -0.366 5.366 10 C 0.302 3.698 11 O -0.422 6.422 12 C 0.178 3.822 13 O -0.484 6.484 14 N -0.132 5.132 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.506 5.506 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.189 1.189 23 O -0.064 6.064 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.250 0.750 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.303 12.198 -8.471 17.524 hybrid contribution 0.148 -0.321 0.458 0.579 sum -9.154 11.877 -8.013 17.002 Atomic orbital electron populations 1.20305 0.85132 1.04178 1.03411 1.22482 0.94060 0.84175 1.05619 1.21531 0.92550 0.99334 1.09822 1.21537 0.98421 0.93426 1.08274 1.22495 0.82911 0.94557 1.06667 1.19430 0.91448 0.85201 0.91641 0.86661 1.22232 1.03163 1.02109 0.94570 1.45746 1.10981 1.31604 1.48292 1.20733 0.84486 0.84059 0.80506 1.90687 1.21325 1.68150 1.62007 1.18886 0.86483 0.87734 0.89094 1.90591 1.20699 1.70564 1.66594 1.41556 1.08648 1.25384 1.37609 1.19897 0.95589 1.05907 1.22229 0.86945 1.25593 0.94365 0.99534 0.98091 1.69482 0.98839 1.40204 1.42088 0.85713 0.78611 0.80030 0.79162 1.19875 1.20504 1.18882 1.83960 1.16102 1.35084 1.71285 0.90175 0.90324 0.89424 0.83478 0.83230 0.91922 0.91270 0.90630 0.74952 0.75974 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.00 0.38 -0.19 16 2 C -0.01 -0.15 7.32 -35.63 -0.26 -0.41 16 3 C -0.21 -2.37 10.81 -39.70 -0.43 -2.80 16 4 C -0.20 -2.40 10.80 -39.70 -0.43 -2.83 16 5 C -0.02 -0.22 6.12 -35.63 -0.22 -0.43 16 6 C 0.23 3.36 3.03 -69.09 -0.21 3.15 16 7 H 0.12 1.71 7.57 -51.93 -0.39 1.31 16 8 C -0.16 -2.12 9.46 37.16 0.35 -1.77 16 9 N -0.71 -12.84 5.06 -55.57 -0.28 -13.12 16 10 C 0.52 11.32 7.83 -11.88 -0.09 11.23 16 11 O -0.54 -12.51 16.13 5.42 0.09 -12.42 16 12 C 0.39 10.04 7.82 -11.88 -0.09 9.94 16 13 O -0.60 -16.25 16.03 5.36 0.09 -16.17 16 14 N -0.50 -13.36 5.25 -11.59 -0.06 -13.42 16 15 C -0.31 -8.45 9.67 -15.14 -0.15 -8.60 16 16 H 0.11 3.18 7.15 -52.49 -0.38 2.80 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -23.22 13.03 55.53 0.72 -22.50 16 19 Si 0.94 20.08 29.56 -169.99 -5.02 15.06 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 O -0.17 -2.37 10.32 5.69 0.06 -2.31 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.15 1.25 8.06 -52.48 -0.42 0.82 16 28 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.41 7.48 7.78 -40.82 -0.32 7.16 16 33 H 0.40 10.89 7.35 -40.82 -0.30 10.59 16 34 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -31.23 308.60 -4.91 -36.14 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -3.90 Total: 16.07 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.25 Total: 8.02 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.38 Total: -49.05 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: 0.23 Total: -30.90 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.23 -4.91 -36.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049223410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.598 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds