Wall clock time and date at job start Mon Mar 30 2020 04:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34515 * 125.79458 * 2 1 4 4 C 1.41378 * 106.84593 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.84200 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79162 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47230 * 19.99647 * 6 5 4 8 8 C 1.52999 * 109.47087 * 259.99632 * 6 5 4 9 9 N 1.46498 * 109.47047 * 139.99535 * 6 5 4 10 10 C 1.34777 * 119.99828 * 204.72109 * 9 6 5 11 11 O 1.21443 * 120.00325 * 0.28121 * 10 9 6 12 12 C 1.48827 * 120.00046 * 180.27751 * 10 9 6 13 13 O 1.21503 * 120.00063 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.36121 * 119.99923 * 179.97438 * 14 12 10 16 16 H 1.08002 * 120.00360 * 0.02562 * 15 14 12 17 17 C 1.39592 * 120.00132 * 180.02562 * 15 14 12 18 18 N 1.31014 * 119.99647 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00031 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.47064 * 90.00344 * 19 17 15 21 21 H 1.48501 * 109.47085 * 209.99923 * 19 17 15 22 22 H 1.48490 * 109.47554 * 329.99983 * 19 17 15 23 23 O 1.34303 * 108.41745 * 0.26038 * 5 4 3 24 24 H 1.08998 * 109.47064 * 89.99730 * 1 2 3 25 25 H 1.08999 * 109.46751 * 209.99859 * 1 2 3 26 26 H 1.08997 * 109.46787 * 329.99147 * 1 2 3 27 27 H 1.08009 * 126.57050 * 0.02562 * 3 2 1 28 28 H 1.08003 * 126.57911 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47098 * 300.00096 * 8 6 5 30 30 H 1.09003 * 109.47054 * 59.99745 * 8 6 5 31 31 H 1.08996 * 109.47245 * 179.97438 * 8 6 5 32 32 H 0.97001 * 120.00384 * 25.00556 * 9 6 5 33 33 H 0.97000 * 120.00317 * 0.02562 * 14 12 10 34 34 H 0.96996 * 120.00096 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6504 -1.0993 0.3501 8 6 5.0194 -2.1480 -1.4227 9 7 4.5058 -2.7733 0.8852 10 6 5.5318 -3.4485 1.4401 11 8 6.6757 -3.1125 1.2089 12 6 5.2631 -4.6058 2.3364 13 8 4.1187 -4.9423 2.5675 14 7 6.2891 -5.2812 2.8909 15 6 6.0432 -6.3394 3.7111 16 1 5.0260 -6.6380 3.9172 17 6 7.1059 -7.0387 4.2859 18 7 8.3399 -6.6768 4.0355 19 14 6.7684 -8.4904 5.4119 20 1 6.7081 -9.7373 4.6076 21 1 7.8567 -8.6013 6.4162 22 1 5.4723 -8.2867 6.1073 23 8 2.2925 -1.0894 -0.0073 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.9665 2.1204 0.0004 28 1 4.5213 1.2433 -0.0004 29 1 4.1396 -2.6865 -1.7747 30 1 5.2164 -1.3031 -2.0827 31 1 5.8798 -2.8171 -1.4231 32 1 3.5922 -3.0418 1.0700 33 1 7.2027 -5.0129 2.7062 34 1 9.0783 -7.1629 4.4345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049223410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:01 Heat of formation + Delta-G solvation = -87.174255 kcal Electronic energy + Delta-G solvation = -19519.755476 eV Core-core repulsion = 16225.324110 eV Total energy + Delta-G solvation = -3294.431366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.64865 -41.36179 -39.28566 -37.01332 -36.18364 -34.18241 -33.55199 -33.01221 -31.33315 -27.93474 -27.42418 -25.36358 -23.22824 -22.86132 -21.20113 -21.05644 -20.41826 -19.16214 -17.79734 -17.53364 -17.23637 -16.76658 -16.55653 -16.01165 -15.77195 -15.18191 -14.96702 -14.66223 -14.38417 -13.96180 -13.79880 -13.76762 -13.69062 -13.56351 -13.12225 -12.97765 -12.69919 -12.58947 -12.50770 -12.29502 -12.10530 -11.68158 -10.87605 -10.42565 -10.29655 -10.28673 -9.28780 -8.67672 -6.12508 0.52949 0.64402 1.40447 1.46582 1.52286 1.58876 1.78428 1.90201 2.28634 2.33875 3.13310 3.21436 3.44723 3.91748 3.96644 4.05172 4.12740 4.16416 4.55999 4.59205 4.70969 4.72892 4.83483 4.86017 5.00618 5.10346 5.21845 5.23803 5.24904 5.61255 5.65909 6.08307 6.16601 6.33025 6.75297 6.94834 7.24946 7.77746 8.48047 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035003 B = 0.003865 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.736766 B = 7242.826706 C = 7760.557750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 C -0.220 4.220 4 C -0.190 4.190 5 C -0.045 4.045 6 C 0.226 3.774 7 H 0.116 0.884 8 C -0.156 4.156 9 N -0.696 5.696 10 C 0.526 3.474 11 O -0.558 6.558 12 C 0.387 3.613 13 O -0.619 6.619 14 N -0.507 5.507 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.003 4.003 18 N -0.893 5.893 19 Si 1.011 2.989 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.264 1.264 23 O -0.190 6.190 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.175 0.825 28 H 0.168 0.832 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.414 0.586 33 H 0.402 0.598 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 13.496 -8.747 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C -0.239 4.239 4 C -0.210 4.210 5 C -0.095 4.095 6 C 0.123 3.877 7 H 0.133 0.867 8 C -0.214 4.214 9 N -0.348 5.348 10 C 0.309 3.691 11 O -0.436 6.436 12 C 0.172 3.828 13 O -0.509 6.509 14 N -0.141 5.141 15 C -0.476 4.476 16 H 0.116 0.884 17 C -0.208 4.208 18 N -0.531 5.531 19 Si 0.831 3.169 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.188 1.188 23 O -0.088 6.088 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.129 0.871 27 H 0.193 0.807 28 H 0.186 0.814 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.251 0.749 33 H 0.237 0.763 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.100 13.185 -8.729 18.763 hybrid contribution 0.317 -0.494 0.463 0.747 sum -9.784 12.691 -8.266 18.031 Atomic orbital electron populations 1.20512 0.82564 1.05167 1.04796 1.23328 0.95630 0.83754 1.04320 1.21910 0.91877 1.00602 1.09495 1.21896 0.99810 0.92899 1.06349 1.22294 0.82705 0.94874 1.09643 1.19618 0.92391 0.84077 0.91641 0.86665 1.22183 1.02409 1.02861 0.93950 1.45740 1.09942 1.31631 1.47527 1.20031 0.85064 0.83540 0.80470 1.90679 1.21815 1.68466 1.62651 1.19549 0.85942 0.88345 0.88997 1.90554 1.21453 1.71461 1.67389 1.41637 1.08686 1.25717 1.38017 1.19997 0.95647 1.07559 1.24413 0.88377 1.26550 0.93729 1.01736 0.98760 1.69543 0.99684 1.41277 1.42576 0.84687 0.78694 0.76307 0.77185 1.18889 1.18999 1.18849 1.83940 1.16419 1.36528 1.71922 0.88493 0.90610 0.87128 0.80739 0.81409 0.91910 0.88446 0.92198 0.74944 0.76344 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.42 71.23 0.74 -0.21 16 2 C -0.02 -0.43 7.32 24.83 0.18 -0.25 16 3 C -0.22 -4.32 10.81 22.19 0.24 -4.08 16 4 C -0.19 -4.24 10.80 22.19 0.24 -4.00 16 5 C -0.05 -1.20 6.12 24.83 0.15 -1.05 16 6 C 0.23 6.55 3.03 44.24 0.13 6.69 16 7 H 0.12 3.34 7.57 -2.39 -0.02 3.32 16 8 C -0.16 -3.93 9.46 71.98 0.68 -3.25 16 9 N -0.70 -25.31 5.06 -448.04 -2.27 -27.57 16 10 C 0.53 23.42 7.83 87.08 0.68 24.10 16 11 O -0.56 -25.95 16.13 -3.54 -0.06 -26.01 16 12 C 0.39 20.29 7.82 87.08 0.68 20.97 16 13 O -0.62 -34.70 16.03 -3.73 -0.06 -34.76 16 14 N -0.51 -28.10 5.25 -308.87 -1.62 -29.72 16 15 C -0.35 -19.66 9.67 84.35 0.82 -18.84 16 16 H 0.10 5.73 7.15 -2.91 -0.02 5.71 16 17 C 0.00 -0.16 5.51 85.14 0.47 0.31 16 18 N -0.89 -47.93 13.03 21.77 0.28 -47.64 16 19 Si 1.01 40.80 29.56 68.60 2.03 42.83 16 20 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 23 O -0.19 -5.22 10.32 -2.55 -0.03 -5.24 16 24 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.41 15.18 7.78 -92.71 -0.72 14.45 16 33 H 0.40 22.34 7.35 -92.71 -0.68 21.66 16 34 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 Total: -1.00 -67.80 308.60 3.04 -64.76 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: -0.25 Total: 42.96 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 5.02 Total: 20.39 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -3.60 Total: -104.94 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -0.14 Total: -66.01 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -67.80 3.04 -64.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049223410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.416 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds