Wall clock time and date at job start Mon Mar 30 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.52994 * 109.47019 * 120.00199 * 2 1 3 5 5 N 1.46506 * 109.47127 * 184.99949 * 4 2 1 6 6 C 1.36883 * 126.39463 * 269.71540 * 5 4 2 7 7 C 1.34672 * 106.81433 * 179.83748 * 6 5 4 8 8 N 1.34125 * 108.02240 * 0.42182 * 7 6 5 9 9 C 1.30505 * 109.25397 * 359.73086 * 8 7 6 10 10 N 1.46500 * 109.46585 * 240.00400 * 2 1 3 11 11 C 1.34773 * 120.00429 * 85.00320 * 10 2 1 12 12 O 1.21443 * 119.99990 * 359.97438 * 11 10 2 13 13 C 1.48826 * 120.00080 * 179.72117 * 11 10 2 14 14 O 1.21503 * 120.00383 * 0.27333 * 13 11 10 15 15 N 1.34777 * 120.00107 * 180.27489 * 13 11 10 16 16 C 1.36126 * 120.00159 * 180.02562 * 15 13 11 17 17 H 1.08002 * 119.99685 * 359.97438 * 16 15 13 18 18 C 1.39582 * 119.99932 * 179.97438 * 16 15 13 19 19 N 1.31014 * 120.00124 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00002 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47483 * 90.00252 * 20 18 16 22 22 H 1.48507 * 109.46904 * 209.99915 * 20 18 16 23 23 H 1.48499 * 109.47134 * 329.99737 * 20 18 16 24 24 H 1.08998 * 109.47131 * 59.99895 * 1 2 3 25 25 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46937 * 299.99956 * 1 2 3 27 27 H 1.09000 * 109.47152 * 304.99753 * 4 2 1 28 28 H 1.09001 * 109.47542 * 65.00115 * 4 2 1 29 29 H 1.07997 * 126.58990 * 359.97438 * 6 5 4 30 30 H 1.07997 * 125.99156 * 180.11542 * 7 6 5 31 31 H 1.07999 * 125.64954 * 180.02562 * 9 8 7 32 32 H 0.97000 * 119.99459 * 264.99431 * 10 2 1 33 33 H 0.97000 * 120.00140 * 359.97438 * 15 13 11 34 34 H 0.96999 * 120.00271 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.6179 1.3109 6 6 4.4001 -1.4980 0.7732 7 6 5.6275 -1.0227 1.0578 8 7 5.4811 0.1117 1.7583 9 6 4.2094 0.3604 1.9138 10 7 2.0183 -0.6905 -1.1963 11 6 2.1470 -0.0182 -2.3572 12 8 1.8579 1.1600 -2.4118 13 6 2.6489 -0.7183 -3.5708 14 8 2.9378 -1.8972 -3.5164 15 7 2.7829 -0.0445 -4.7304 16 6 3.2414 -0.6850 -5.8407 17 1 3.4982 -1.7329 -5.7922 18 6 3.3796 0.0127 -7.0417 19 7 3.8205 -0.6038 -8.1104 20 14 2.9348 1.8250 -7.1257 21 1 4.1301 2.6438 -6.8002 22 1 2.4656 2.1566 -8.4951 23 1 1.8548 2.1153 -6.1486 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 4.1700 -2.3991 0.2242 30 1 6.5655 -1.4779 0.7761 31 1 3.7932 1.2083 2.4374 32 1 2.2490 -1.6317 -1.1527 33 1 2.5519 0.8965 -4.7741 34 1 3.9169 -0.1189 -8.9449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049237370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:04 Heat of formation + Delta-G solvation = -4.136262 kcal Electronic energy + Delta-G solvation = -19982.904768 eV Core-core repulsion = 16724.366950 eV Total energy + Delta-G solvation = -3258.537817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.04951 -39.83497 -37.72158 -36.28210 -34.39602 -33.15617 -31.94826 -30.86068 -29.36995 -26.71164 -26.10788 -23.46206 -21.57305 -21.27968 -20.77805 -19.62962 -19.07835 -17.65906 -16.93484 -16.45385 -15.58102 -15.16873 -14.87642 -14.70475 -14.42714 -13.92373 -13.58733 -13.52727 -13.31177 -13.07178 -12.90116 -12.70031 -12.49797 -12.37495 -12.21952 -11.45855 -11.31270 -10.79094 -10.61897 -10.14692 -9.97746 -9.81393 -9.68310 -9.07483 -8.51037 -8.46354 -8.45564 -6.63190 -4.04611 2.05406 2.20619 2.67750 3.00836 3.03338 3.07072 3.11233 3.23242 3.91889 4.07408 4.30360 4.38556 4.66334 4.68651 4.79449 4.84983 5.06557 5.09746 5.19344 5.40440 5.50903 5.58534 5.71107 5.77593 5.99086 6.21409 6.50154 6.75990 7.14775 7.20695 7.49767 7.85990 8.08796 8.15803 8.43280 8.68676 9.14257 9.55963 10.46680 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.005047 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.692309 B = 5546.395906 C = 5961.930063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 H 0.095 0.905 4 C 0.098 3.902 5 N -0.458 5.458 6 C -0.044 4.044 7 C -0.031 4.031 8 N -0.496 5.496 9 C 0.176 3.824 10 N -0.708 5.708 11 C 0.518 3.482 12 O -0.548 6.548 13 C 0.402 3.598 14 O -0.580 6.580 15 N -0.525 5.525 16 C -0.308 4.308 17 H 0.128 0.872 18 C 0.054 3.946 19 N -0.847 5.847 20 Si 0.875 3.125 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.260 1.260 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.174 0.826 30 H 0.168 0.832 31 H 0.201 0.799 32 H 0.409 0.591 33 H 0.383 0.617 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 1.190 17.720 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 H 0.113 0.887 4 C -0.026 4.026 5 N -0.141 5.141 6 C -0.177 4.177 7 C -0.179 4.179 8 N -0.214 5.214 9 C -0.106 4.106 10 N -0.362 5.362 11 C 0.303 3.697 12 O -0.425 6.425 13 C 0.187 3.813 14 O -0.466 6.466 15 N -0.161 5.161 16 C -0.438 4.438 17 H 0.146 0.854 18 C -0.155 4.155 19 N -0.484 5.484 20 Si 0.700 3.300 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.185 1.185 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.192 0.808 30 H 0.186 0.814 31 H 0.218 0.782 32 H 0.245 0.755 33 H 0.218 0.782 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.306 1.746 17.776 18.633 hybrid contribution -0.903 0.432 -0.631 1.184 sum -6.209 2.178 17.145 18.364 Atomic orbital electron populations 1.22145 0.93809 1.02821 1.03327 1.21334 0.94869 0.98158 0.83642 0.88663 1.22274 0.77387 1.03598 0.99334 1.45490 1.06900 1.20202 1.41520 1.22794 0.89841 0.99071 1.05990 1.22289 0.97397 0.95078 1.03110 1.70265 1.16431 1.16178 1.18540 1.24937 0.87403 0.95809 1.02437 1.45648 1.67387 1.14648 1.08543 1.20653 0.77444 0.86594 0.85007 1.90679 1.50324 1.16101 1.85408 1.18763 0.90499 0.87946 0.84094 1.90616 1.56477 1.15219 1.84301 1.41833 1.53584 1.11860 1.08846 1.19566 1.40008 0.98810 0.85409 0.85449 1.25233 0.96177 0.99191 0.94898 1.69436 1.40578 1.37444 1.00917 0.86685 0.80107 0.84014 0.79202 1.18824 1.19442 1.18495 0.90991 0.91878 0.91328 0.87268 0.88253 0.80834 0.81445 0.78208 0.75507 0.78186 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.10 16 2 C 0.13 1.35 2.81 -67.93 -0.19 1.16 16 3 H 0.10 1.21 7.58 -51.93 -0.39 0.82 16 4 C 0.10 0.73 5.65 -4.04 -0.02 0.71 16 5 N -0.46 -4.92 2.69 -118.58 -0.32 -5.24 16 6 C -0.04 -0.54 11.30 -16.56 -0.19 -0.73 16 7 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 8 N -0.50 -7.39 11.25 -14.67 -0.17 -7.55 16 9 C 0.18 2.08 12.56 -90.38 -1.14 0.95 16 10 N -0.71 -10.44 4.76 -54.44 -0.26 -10.69 16 11 C 0.52 10.27 7.83 -11.88 -0.09 10.18 16 12 O -0.55 -11.65 16.13 5.42 0.09 -11.56 16 13 C 0.40 9.57 7.82 -11.88 -0.09 9.48 16 14 O -0.58 -14.91 16.03 5.36 0.09 -14.82 16 15 N -0.52 -13.17 5.06 -11.59 -0.06 -13.23 16 16 C -0.31 -8.56 10.16 -15.14 -0.15 -8.71 16 17 H 0.13 3.93 7.36 -52.49 -0.39 3.54 16 18 C 0.05 1.43 5.51 -17.40 -0.10 1.33 16 19 N -0.85 -23.42 13.94 55.53 0.77 -22.65 16 20 Si 0.88 19.32 27.74 -169.99 -4.72 14.60 16 21 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.56 6.53 56.52 0.37 -5.19 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.41 5.71 8.02 -40.82 -0.33 5.39 16 33 H 0.38 9.10 5.22 -40.82 -0.21 8.88 16 34 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -33.78 304.70 -5.68 -39.46 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -3.87 Total: 14.49 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -1.83 Total: 12.61 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.03 Total: -59.37 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: 0.17 Total: -26.38 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.72 Total: 14.60 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.78 -5.68 -39.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049237370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.321 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds