Wall clock time and date at job start Mon Mar 30 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.52994 * 109.47019 * 120.00199 * 2 1 3 5 5 N 1.46506 * 109.47127 * 184.99949 * 4 2 1 6 6 C 1.36883 * 126.39463 * 269.71540 * 5 4 2 7 7 C 1.34672 * 106.81433 * 179.83748 * 6 5 4 8 8 N 1.34125 * 108.02240 * 0.42182 * 7 6 5 9 9 C 1.30505 * 109.25397 * 359.73086 * 8 7 6 10 10 N 1.46500 * 109.46585 * 240.00400 * 2 1 3 11 11 C 1.34773 * 120.00429 * 85.00320 * 10 2 1 12 12 O 1.21443 * 119.99990 * 359.97438 * 11 10 2 13 13 C 1.48826 * 120.00080 * 179.72117 * 11 10 2 14 14 O 1.21503 * 120.00383 * 0.27333 * 13 11 10 15 15 N 1.34777 * 120.00107 * 180.27489 * 13 11 10 16 16 C 1.36126 * 120.00159 * 180.02562 * 15 13 11 17 17 H 1.08002 * 119.99685 * 359.97438 * 16 15 13 18 18 C 1.39582 * 119.99932 * 179.97438 * 16 15 13 19 19 N 1.31014 * 120.00124 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00002 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47483 * 90.00252 * 20 18 16 22 22 H 1.48507 * 109.46904 * 209.99915 * 20 18 16 23 23 H 1.48499 * 109.47134 * 329.99737 * 20 18 16 24 24 H 1.08998 * 109.47131 * 59.99895 * 1 2 3 25 25 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46937 * 299.99956 * 1 2 3 27 27 H 1.09000 * 109.47152 * 304.99753 * 4 2 1 28 28 H 1.09001 * 109.47542 * 65.00115 * 4 2 1 29 29 H 1.07997 * 126.58990 * 359.97438 * 6 5 4 30 30 H 1.07997 * 125.99156 * 180.11542 * 7 6 5 31 31 H 1.07999 * 125.64954 * 180.02562 * 9 8 7 32 32 H 0.97000 * 119.99459 * 264.99431 * 10 2 1 33 33 H 0.97000 * 120.00140 * 359.97438 * 15 13 11 34 34 H 0.96999 * 120.00271 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.6179 1.3109 6 6 4.4001 -1.4980 0.7732 7 6 5.6275 -1.0227 1.0578 8 7 5.4811 0.1117 1.7583 9 6 4.2094 0.3604 1.9138 10 7 2.0183 -0.6905 -1.1963 11 6 2.1470 -0.0182 -2.3572 12 8 1.8579 1.1600 -2.4118 13 6 2.6489 -0.7183 -3.5708 14 8 2.9378 -1.8972 -3.5164 15 7 2.7829 -0.0445 -4.7304 16 6 3.2414 -0.6850 -5.8407 17 1 3.4982 -1.7329 -5.7922 18 6 3.3796 0.0127 -7.0417 19 7 3.8205 -0.6038 -8.1104 20 14 2.9348 1.8250 -7.1257 21 1 4.1301 2.6438 -6.8002 22 1 2.4656 2.1566 -8.4951 23 1 1.8548 2.1153 -6.1486 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 4.1700 -2.3991 0.2242 30 1 6.5655 -1.4779 0.7761 31 1 3.7932 1.2083 2.4374 32 1 2.2490 -1.6317 -1.1527 33 1 2.5519 0.8965 -4.7741 34 1 3.9169 -0.1189 -8.9449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049237370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:59 Heat of formation + Delta-G solvation = -29.447766 kcal Electronic energy + Delta-G solvation = -19984.002357 eV Core-core repulsion = 16724.366950 eV Total energy + Delta-G solvation = -3259.635407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 4.44 seconds Orbital eigenvalues (eV) -42.95045 -41.45913 -39.44876 -37.51870 -36.33518 -34.33017 -33.89954 -31.92701 -30.29807 -28.04025 -27.42391 -25.04847 -22.60820 -22.30096 -21.71811 -21.35146 -20.90913 -18.92916 -18.22432 -17.92367 -17.11898 -16.72805 -16.41856 -15.94671 -15.37159 -15.33348 -14.91716 -14.85960 -14.66212 -14.46951 -14.35557 -14.01325 -13.53570 -13.35161 -13.11840 -12.96907 -12.58610 -12.51083 -12.24026 -12.00811 -11.73990 -10.94502 -10.65066 -10.50065 -10.37981 -10.26269 -9.42263 -8.64882 -6.18733 0.48950 1.15238 1.25828 1.30272 1.35461 1.66243 1.93183 2.07293 2.25240 2.26327 3.01461 3.04580 3.54125 3.77290 3.82724 3.90373 3.97896 4.20749 4.29697 4.54224 4.61180 4.73031 4.81967 4.91756 5.22294 5.24398 5.28504 5.37914 5.71440 5.81531 6.02177 6.32088 6.34136 6.56105 6.87943 7.11959 7.16209 7.59094 8.49654 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.005047 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.692309 B = 5546.395906 C = 5961.930063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 H 0.080 0.920 4 C 0.101 3.899 5 N -0.456 5.456 6 C -0.049 4.049 7 C -0.064 4.064 8 N -0.541 5.541 9 C 0.179 3.821 10 N -0.688 5.688 11 C 0.526 3.474 12 O -0.560 6.560 13 C 0.404 3.596 14 O -0.601 6.601 15 N -0.533 5.533 16 C -0.339 4.339 17 H 0.079 0.921 18 C 0.012 3.988 19 N -0.891 5.891 20 Si 0.946 3.054 21 H -0.255 1.255 22 H -0.255 1.255 23 H -0.248 1.248 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.187 0.813 30 H 0.168 0.832 31 H 0.237 0.763 32 H 0.414 0.586 33 H 0.392 0.608 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 2.710 20.135 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 H 0.099 0.901 4 C -0.021 4.021 5 N -0.138 5.138 6 C -0.182 4.182 7 C -0.210 4.210 8 N -0.260 5.260 9 C -0.103 4.103 10 N -0.341 5.341 11 C 0.308 3.692 12 O -0.439 6.439 13 C 0.189 3.811 14 O -0.488 6.488 15 N -0.172 5.172 16 C -0.468 4.468 17 H 0.097 0.903 18 C -0.193 4.193 19 N -0.528 5.528 20 Si 0.765 3.235 21 H -0.179 1.179 22 H -0.179 1.179 23 H -0.172 1.172 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.124 0.876 27 H 0.173 0.827 28 H 0.140 0.860 29 H 0.204 0.796 30 H 0.185 0.815 31 H 0.253 0.747 32 H 0.251 0.749 33 H 0.227 0.773 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.370 3.230 20.220 21.762 hybrid contribution -0.287 -0.165 -1.200 1.245 sum -7.657 3.065 19.020 20.731 Atomic orbital electron populations 1.22107 0.91797 1.03899 1.03667 1.21704 0.96352 0.97379 0.82858 0.90145 1.22582 0.75307 1.05150 0.99055 1.45664 1.08078 1.19385 1.40665 1.23006 0.89824 0.99618 1.05756 1.22529 0.98473 0.95728 1.04290 1.70214 1.18646 1.17070 1.20074 1.25638 0.86814 0.96347 1.01513 1.45710 1.65264 1.14823 1.08263 1.19830 0.78000 0.86270 0.85095 1.90679 1.51288 1.16327 1.85627 1.19721 0.88408 0.87838 0.85138 1.90595 1.56594 1.16547 1.85105 1.41721 1.54602 1.12179 1.08663 1.19168 1.42878 0.97339 0.87445 0.90316 1.26050 0.95274 1.04196 0.93765 1.69540 1.41721 1.39790 1.01784 0.85627 0.80352 0.77329 0.80144 1.17895 1.17866 1.17222 0.94037 0.90454 0.87618 0.82732 0.85975 0.79627 0.81460 0.74723 0.74900 0.77252 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 2 C 0.12 2.15 2.81 44.99 0.13 2.27 16 3 H 0.08 1.76 7.58 -2.39 -0.02 1.74 16 4 C 0.10 1.01 5.65 86.38 0.49 1.50 16 5 N -0.46 -8.35 2.69 -529.06 -1.42 -9.78 16 6 C -0.05 -1.12 11.30 83.09 0.94 -0.18 16 7 C -0.06 -1.77 11.87 83.52 0.99 -0.78 16 8 N -0.54 -15.68 11.25 -200.32 -2.25 -17.94 16 9 C 0.18 3.76 12.56 180.26 2.26 6.02 16 10 N -0.69 -18.72 4.76 -444.46 -2.12 -20.84 16 11 C 0.53 20.23 7.83 87.08 0.68 20.91 16 12 O -0.56 -22.95 16.13 -3.54 -0.06 -23.01 16 13 C 0.40 19.41 7.82 87.08 0.68 20.09 16 14 O -0.60 -31.61 16.03 -3.72 -0.06 -31.67 16 15 N -0.53 -27.22 5.06 -308.87 -1.56 -28.78 16 16 C -0.34 -19.62 10.16 84.35 0.86 -18.76 16 17 H 0.08 5.21 7.36 -2.91 -0.02 5.19 16 18 C 0.01 0.67 5.51 85.14 0.47 1.14 16 19 N -0.89 -50.78 13.94 21.76 0.30 -50.48 16 20 Si 0.95 39.61 27.74 68.60 1.90 41.52 16 21 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 23 H -0.25 -9.83 6.53 99.48 0.65 -9.18 16 24 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.24 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.41 10.64 8.02 -92.71 -0.74 9.89 16 33 H 0.39 18.43 5.22 -92.71 -0.48 17.94 16 34 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 Total: -1.00 -77.94 304.70 2.77 -75.17 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.14 Total: 35.05 kcal Atomic # 6 Polarization: 22.57 SS G_CDS: 8.18 Total: 30.75 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -7.05 Total: -127.81 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.12 Total: -54.68 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.90 Total: 41.52 kcal Total: -77.94 2.77 -75.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049237370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.723 kcal (2) G-P(sol) polarization free energy of solvation -77.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.45 seconds