Wall clock time and date at job start Mon Mar 30 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.36878 * 126.39715 * 269.71681 * 5 4 2 7 7 C 1.34674 * 106.81432 * 179.84238 * 6 5 4 8 8 N 1.34128 * 108.02135 * 0.41947 * 7 6 5 9 9 C 1.30497 * 109.25344 * 359.73297 * 8 7 6 10 10 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 11 11 C 1.34776 * 120.00219 * 275.00364 * 10 2 1 12 12 O 1.21435 * 119.99995 * 359.97438 * 11 10 2 13 13 C 1.48830 * 119.99814 * 180.02562 * 11 10 2 14 14 O 1.21505 * 119.99964 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99814 * 179.97438 * 13 11 10 16 16 C 1.36125 * 119.99956 * 179.97438 * 15 13 11 17 17 H 1.08001 * 119.99911 * 0.02562 * 16 15 13 18 18 C 1.39590 * 119.99951 * 179.97438 * 16 15 13 19 19 N 1.31012 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99826 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47569 * 90.00107 * 20 18 16 22 22 H 1.48507 * 109.46854 * 210.00025 * 20 18 16 23 23 H 1.48503 * 109.47206 * 329.99877 * 20 18 16 24 24 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 26 26 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 27 27 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 28 28 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 29 29 H 1.07995 * 126.59002 * 359.97438 * 6 5 4 30 30 H 1.07998 * 125.98571 * 180.11627 * 7 6 5 31 31 H 1.08006 * 125.64402 * 180.02562 * 9 8 7 32 32 H 0.97006 * 119.99491 * 95.00433 * 10 2 1 33 33 H 0.97006 * 120.00290 * 359.97438 * 15 13 11 34 34 H 0.96998 * 119.99893 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.6177 -1.3109 6 6 4.2190 0.3713 -1.9263 7 6 5.5206 0.0811 -1.7386 8 7 5.5944 -1.0591 -1.0360 9 6 4.3880 -1.4834 -0.7763 10 7 2.0183 -0.6905 1.1962 11 6 2.1470 -0.0182 2.3572 12 8 1.8585 1.1602 2.4116 13 6 2.6436 -0.7196 3.5722 14 8 2.9326 -1.8985 3.5177 15 7 2.7728 -0.0471 4.7331 16 6 3.2265 -0.6888 5.8445 17 1 3.4834 -1.7367 5.7960 18 6 3.3608 0.0079 7.0467 19 7 3.0496 1.2791 7.1053 20 14 3.9841 -0.8725 8.5717 21 1 5.4642 -0.7682 8.6334 22 1 3.3929 -0.2459 9.7813 23 1 3.5908 -2.3033 8.5128 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -0.2617 -2.1370 28 1 1.7517 -1.7715 -1.2055 29 1 3.8191 1.2220 -2.4580 30 1 6.3581 0.6618 -2.0959 31 1 4.1408 -2.3784 -0.2247 32 1 2.2490 -1.6317 1.1527 33 1 2.5424 0.8942 4.7766 34 1 3.1426 1.7631 7.9408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049237372.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:12 Heat of formation + Delta-G solvation = -10.374629 kcal Electronic energy + Delta-G solvation = -19914.903377 eV Core-core repulsion = 16656.095044 eV Total energy + Delta-G solvation = -3258.808333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.78 seconds Orbital eigenvalues (eV) -42.00815 -39.66241 -37.53540 -36.16001 -34.32497 -33.10277 -31.46621 -30.69737 -29.39220 -26.63614 -25.95138 -23.55948 -21.52760 -21.28682 -20.74138 -19.58778 -18.39145 -17.62367 -16.95752 -16.28768 -15.49226 -15.06991 -14.73943 -14.59033 -14.12730 -14.05768 -13.85704 -13.47271 -13.23663 -13.05402 -12.79334 -12.62155 -12.28139 -12.14918 -11.78365 -11.36718 -11.20355 -10.57162 -10.45604 -10.38130 -9.90383 -9.73855 -9.65273 -8.93043 -8.46200 -8.32317 -8.25134 -6.69608 -4.01592 2.08035 2.37653 2.72666 3.12531 3.13998 3.18818 3.26192 3.30866 4.03418 4.22635 4.37712 4.46123 4.79233 4.82119 4.87177 4.96497 5.14206 5.17790 5.26426 5.46636 5.49650 5.69802 5.79229 6.00628 6.07800 6.24945 6.62379 6.77878 7.19105 7.28762 7.58281 7.79417 8.15628 8.27230 8.54492 8.92887 9.28319 9.81583 10.45164 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.004714 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.836204 B = 5937.989761 C = 6499.988731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.094 0.906 4 C 0.098 3.902 5 N -0.458 5.458 6 C -0.061 4.061 7 C -0.031 4.031 8 N -0.495 5.495 9 C 0.193 3.807 10 N -0.712 5.712 11 C 0.518 3.482 12 O -0.544 6.544 13 C 0.392 3.608 14 O -0.597 6.597 15 N -0.497 5.497 16 C -0.305 4.305 17 H 0.113 0.887 18 C 0.031 3.969 19 N -0.868 5.868 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.264 1.264 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.171 0.829 30 H 0.166 0.834 31 H 0.203 0.797 32 H 0.407 0.593 33 H 0.404 0.596 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 -1.485 -15.912 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 H 0.112 0.888 4 C -0.026 4.026 5 N -0.141 5.141 6 C -0.193 4.193 7 C -0.178 4.178 8 N -0.213 5.213 9 C -0.089 4.089 10 N -0.367 5.367 11 C 0.303 3.697 12 O -0.421 6.421 13 C 0.177 3.823 14 O -0.486 6.486 15 N -0.131 5.131 16 C -0.436 4.436 17 H 0.131 0.869 18 C -0.176 4.176 19 N -0.506 5.506 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.189 0.811 30 H 0.184 0.816 31 H 0.219 0.781 32 H 0.243 0.757 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.569 -1.623 -15.510 15.998 hybrid contribution -0.561 0.318 0.516 0.826 sum -4.129 -1.305 -14.994 15.607 Atomic orbital electron populations 1.22140 0.93905 1.02744 1.03270 1.21294 0.94798 0.98179 0.83666 0.88763 1.22279 0.77369 1.03522 0.99424 1.45520 1.07128 1.20280 1.41130 1.22677 0.92956 0.97014 1.06660 1.22284 0.95427 0.96640 1.03481 1.70304 1.22267 1.12266 1.16468 1.25032 0.83991 0.98085 1.01840 1.45674 1.67814 1.14537 1.08625 1.20721 0.77371 0.86642 0.84959 1.90685 1.49957 1.16085 1.85350 1.18888 0.91020 0.88010 0.84428 1.90579 1.57905 1.15484 1.84644 1.41566 1.51164 1.13104 1.07252 1.19897 1.40217 0.97282 0.86174 0.86913 1.25601 0.96404 0.95556 1.00005 1.69482 1.43859 1.08305 1.28934 0.85710 0.79052 0.79579 0.79162 1.19819 1.20500 1.18858 0.91918 0.90951 0.91482 0.87531 0.88111 0.81126 0.81623 0.78064 0.75699 0.76048 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.15 0.35 -1.24 16 2 C 0.13 1.47 2.81 -67.93 -0.19 1.28 16 3 H 0.09 1.31 7.58 -51.92 -0.39 0.91 16 4 C 0.10 0.80 5.65 -4.04 -0.02 0.78 16 5 N -0.46 -5.23 2.70 -118.57 -0.32 -5.55 16 6 C -0.06 -0.70 11.58 -16.56 -0.19 -0.89 16 7 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 8 N -0.50 -8.01 11.25 -14.66 -0.16 -8.17 16 9 C 0.19 2.66 12.22 -90.38 -1.10 1.55 16 10 N -0.71 -11.13 4.73 -54.44 -0.26 -11.38 16 11 C 0.52 10.92 7.83 -11.88 -0.09 10.82 16 12 O -0.54 -12.42 16.13 5.42 0.09 -12.34 16 13 C 0.39 9.79 7.82 -11.88 -0.09 9.70 16 14 O -0.60 -15.76 16.03 5.36 0.09 -15.67 16 15 N -0.50 -13.30 5.25 -11.59 -0.06 -13.36 16 16 C -0.31 -8.42 9.68 -15.14 -0.15 -8.56 16 17 H 0.11 3.17 7.15 -52.49 -0.38 2.80 16 18 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 19 N -0.87 -23.28 13.03 55.53 0.72 -22.55 16 20 Si 0.94 20.11 29.56 -169.99 -5.02 15.09 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 24 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.20 2.36 8.06 -52.48 -0.42 1.94 16 32 H 0.41 5.97 7.99 -40.82 -0.33 5.64 16 33 H 0.40 10.92 7.35 -40.82 -0.30 10.62 16 34 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -33.75 307.69 -6.00 -39.75 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -3.91 Total: 16.01 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: -1.80 Total: 13.54 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.08 Total: -61.01 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: 0.17 Total: -28.01 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.75 -6.00 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049237372.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.374 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.78 seconds