Wall clock time and date at job start Mon Mar 30 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.36878 * 126.39715 * 269.71681 * 5 4 2 7 7 C 1.34674 * 106.81432 * 179.84238 * 6 5 4 8 8 N 1.34128 * 108.02135 * 0.41947 * 7 6 5 9 9 C 1.30497 * 109.25344 * 359.73297 * 8 7 6 10 10 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 11 11 C 1.34776 * 120.00219 * 275.00364 * 10 2 1 12 12 O 1.21435 * 119.99995 * 359.97438 * 11 10 2 13 13 C 1.48830 * 119.99814 * 180.02562 * 11 10 2 14 14 O 1.21505 * 119.99964 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99814 * 179.97438 * 13 11 10 16 16 C 1.36125 * 119.99956 * 179.97438 * 15 13 11 17 17 H 1.08001 * 119.99911 * 0.02562 * 16 15 13 18 18 C 1.39590 * 119.99951 * 179.97438 * 16 15 13 19 19 N 1.31012 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99826 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47569 * 90.00107 * 20 18 16 22 22 H 1.48507 * 109.46854 * 210.00025 * 20 18 16 23 23 H 1.48503 * 109.47206 * 329.99877 * 20 18 16 24 24 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 26 26 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 27 27 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 28 28 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 29 29 H 1.07995 * 126.59002 * 359.97438 * 6 5 4 30 30 H 1.07998 * 125.98571 * 180.11627 * 7 6 5 31 31 H 1.08006 * 125.64402 * 180.02562 * 9 8 7 32 32 H 0.97006 * 119.99491 * 95.00433 * 10 2 1 33 33 H 0.97006 * 120.00290 * 359.97438 * 15 13 11 34 34 H 0.96998 * 119.99893 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.6177 -1.3109 6 6 4.2190 0.3713 -1.9263 7 6 5.5206 0.0811 -1.7386 8 7 5.5944 -1.0591 -1.0360 9 6 4.3880 -1.4834 -0.7763 10 7 2.0183 -0.6905 1.1962 11 6 2.1470 -0.0182 2.3572 12 8 1.8585 1.1602 2.4116 13 6 2.6436 -0.7196 3.5722 14 8 2.9326 -1.8985 3.5177 15 7 2.7728 -0.0471 4.7331 16 6 3.2265 -0.6888 5.8445 17 1 3.4834 -1.7367 5.7960 18 6 3.3608 0.0079 7.0467 19 7 3.0496 1.2791 7.1053 20 14 3.9841 -0.8725 8.5717 21 1 5.4642 -0.7682 8.6334 22 1 3.3929 -0.2459 9.7813 23 1 3.5908 -2.3033 8.5128 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -0.2617 -2.1370 28 1 1.7517 -1.7715 -1.2055 29 1 3.8191 1.2220 -2.4580 30 1 6.3581 0.6618 -2.0959 31 1 4.1408 -2.3784 -0.2247 32 1 2.2490 -1.6317 1.1527 33 1 2.5424 0.8942 4.7766 34 1 3.1426 1.7631 7.9408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049237372.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:08 Heat of formation + Delta-G solvation = -35.311999 kcal Electronic energy + Delta-G solvation = -19915.984743 eV Core-core repulsion = 16656.095044 eV Total energy + Delta-G solvation = -3259.889699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.95526 -41.34726 -39.32308 -37.48325 -36.29102 -34.29066 -33.45636 -31.86111 -30.33778 -27.91238 -27.42239 -25.21794 -22.63236 -22.33888 -21.72886 -21.20944 -20.40106 -18.96595 -18.23516 -17.81389 -17.05212 -16.61591 -16.32293 -15.97900 -15.70040 -15.14299 -14.98914 -14.82461 -14.58535 -14.39789 -14.01784 -13.70615 -13.58525 -13.23956 -13.02038 -12.98287 -12.59607 -12.34263 -12.19071 -12.10982 -11.67928 -10.92416 -10.69288 -10.30559 -10.28140 -10.19284 -9.41356 -8.67745 -6.12675 0.57922 1.14645 1.39860 1.45857 1.54455 1.75422 1.93607 2.25604 2.28349 2.35911 3.13755 3.22731 3.54771 3.82330 3.90123 3.95712 3.99410 4.22643 4.27541 4.53737 4.60983 4.72442 4.79053 4.91594 5.23199 5.24134 5.28521 5.40442 5.65829 5.86058 6.10682 6.28617 6.34759 6.78919 6.98987 7.18081 7.25896 7.77634 8.48184 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.004714 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.836204 B = 5937.989761 C = 6499.988731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.122 3.878 3 H 0.074 0.926 4 C 0.101 3.899 5 N -0.454 5.454 6 C -0.046 4.046 7 C -0.066 4.066 8 N -0.544 5.544 9 C 0.174 3.826 10 N -0.690 5.690 11 C 0.523 3.477 12 O -0.566 6.566 13 C 0.387 3.613 14 O -0.615 6.615 15 N -0.512 5.512 16 C -0.346 4.346 17 H 0.099 0.901 18 C -0.005 4.005 19 N -0.897 5.897 20 Si 1.010 2.990 21 H -0.266 1.266 22 H -0.266 1.266 23 H -0.262 1.262 24 H 0.079 0.921 25 H 0.037 0.963 26 H 0.104 0.896 27 H 0.151 0.849 28 H 0.127 0.873 29 H 0.208 0.792 30 H 0.177 0.823 31 H 0.213 0.787 32 H 0.414 0.586 33 H 0.399 0.601 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 -1.729 -17.382 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.018 3.982 3 H 0.093 0.907 4 C -0.020 4.020 5 N -0.137 5.137 6 C -0.179 4.179 7 C -0.213 4.213 8 N -0.262 5.262 9 C -0.109 4.109 10 N -0.343 5.343 11 C 0.306 3.694 12 O -0.445 6.445 13 C 0.172 3.828 14 O -0.504 6.504 15 N -0.146 5.146 16 C -0.475 4.475 17 H 0.116 0.884 18 C -0.209 4.209 19 N -0.534 5.534 20 Si 0.830 3.170 21 H -0.191 1.191 22 H -0.190 1.190 23 H -0.187 1.187 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.123 0.877 27 H 0.168 0.832 28 H 0.146 0.854 29 H 0.225 0.775 30 H 0.194 0.806 31 H 0.229 0.771 32 H 0.251 0.749 33 H 0.234 0.766 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.745 -1.882 -17.028 17.777 hybrid contribution -0.240 0.401 0.814 0.939 sum -4.985 -1.481 -16.214 17.028 Atomic orbital electron populations 1.22096 0.91889 1.03960 1.03446 1.21645 0.96300 0.97210 0.83057 0.90732 1.22572 0.75351 1.05251 0.98857 1.45698 1.08257 1.19534 1.40177 1.23242 0.92299 0.97184 1.05160 1.22692 0.97273 0.96777 1.04569 1.70220 1.24139 1.13894 1.17989 1.25255 0.84157 0.98999 1.02486 1.45684 1.65660 1.14719 1.08248 1.20013 0.77816 0.86260 0.85334 1.90678 1.51317 1.16713 1.85743 1.19700 0.89737 0.88011 0.85361 1.90544 1.58223 1.16345 1.85316 1.41665 1.52092 1.12894 1.07955 1.19975 1.42857 0.97140 0.87555 0.88353 1.26540 0.95672 0.96203 1.02464 1.69547 1.44218 1.09501 1.30175 0.84699 0.78600 0.78364 0.75289 1.19141 1.18994 1.18657 0.90191 0.94340 0.87748 0.83157 0.85446 0.77476 0.80553 0.77086 0.74937 0.76620 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.48 71.98 0.68 -1.85 16 2 C 0.12 2.49 2.81 44.99 0.13 2.62 16 3 H 0.07 1.90 7.58 -2.38 -0.02 1.88 16 4 C 0.10 1.21 5.65 86.38 0.49 1.70 16 5 N -0.45 -9.13 2.70 -529.06 -1.43 -10.56 16 6 C -0.05 -0.93 11.58 83.09 0.96 0.03 16 7 C -0.07 -1.76 11.87 83.52 0.99 -0.77 16 8 N -0.54 -17.62 11.25 -200.31 -2.25 -19.87 16 9 C 0.17 4.62 12.22 180.26 2.20 6.82 16 10 N -0.69 -20.67 4.73 -444.46 -2.10 -22.78 16 11 C 0.52 22.15 7.83 87.08 0.68 22.83 16 12 O -0.57 -26.12 16.13 -3.51 -0.06 -26.17 16 13 C 0.39 19.81 7.82 87.08 0.68 20.49 16 14 O -0.61 -33.06 16.03 -3.73 -0.06 -33.12 16 15 N -0.51 -28.41 5.25 -308.86 -1.62 -30.03 16 16 C -0.35 -19.66 9.68 84.35 0.82 -18.84 16 17 H 0.10 5.74 7.15 -2.91 -0.02 5.72 16 18 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 19 N -0.90 -48.73 13.03 21.77 0.28 -48.45 16 20 Si 1.01 41.25 29.56 68.60 2.03 43.28 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.21 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.41 11.49 7.99 -92.70 -0.74 10.75 16 33 H 0.40 22.48 7.35 -92.70 -0.68 21.80 16 34 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 Total: -1.00 -76.88 307.69 2.62 -74.27 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.28 Total: 40.19 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 8.10 Total: 33.25 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -7.12 Total: -131.69 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -0.12 Total: -59.30 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -76.88 2.62 -74.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049237372.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.956 kcal (2) G-P(sol) polarization free energy of solvation -76.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds