Wall clock time and date at job start Mon Mar 30 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 O 1.21292 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00095 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99386 * 359.97438 * 9 8 6 11 11 C 1.38941 * 120.00393 * 179.97438 * 9 8 6 12 12 N 1.31408 * 120.00397 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00009 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47309 * 89.99758 * 13 11 9 15 15 H 1.48496 * 109.47518 * 209.99884 * 13 11 9 16 16 H 1.48503 * 109.47255 * 329.99853 * 13 11 9 17 17 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 18 18 C 1.38244 * 119.97344 * 79.72858 * 17 2 1 19 19 C 1.38194 * 120.02824 * 179.72611 * 18 17 2 20 20 C 1.38465 * 119.97117 * 0.52397 * 19 18 17 21 21 F 1.35095 * 120.02764 * 179.72727 * 20 19 18 22 22 C 1.38461 * 119.94608 * 359.74837 * 20 19 18 23 23 C 1.38200 * 119.97516 * 359.97438 * 22 20 19 24 24 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 25 25 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 27 27 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 0.96997 * 120.00713 * 359.97438 * 8 6 5 31 31 H 0.97001 * 120.00755 * 180.02562 * 12 11 9 32 32 H 1.08007 * 119.98866 * 359.97438 * 18 17 2 33 33 H 1.07998 * 120.01764 * 180.25184 * 19 18 17 34 34 H 1.08005 * 120.00979 * 179.97438 * 22 20 19 35 35 H 1.08003 * 119.98360 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8677 -1.6987 -3.4702 8 7 2.7283 0.1206 -4.7325 9 6 3.1881 -0.5565 -5.8324 10 1 3.4377 -1.6045 -5.7560 11 6 3.3329 0.1055 -7.0454 12 7 3.7740 -0.5433 -8.0995 13 14 2.9004 1.9179 -7.1777 14 1 4.1005 2.7369 -6.8709 15 1 2.4364 2.2168 -8.5563 16 1 1.8204 2.2410 -6.2110 17 6 2.0324 -0.7104 1.2305 18 6 2.0612 -2.0921 1.2669 19 6 2.5270 -2.7446 2.3925 20 6 2.9546 -2.0142 3.4883 21 9 3.4049 -2.6510 4.5913 22 6 2.9199 -0.6304 3.4528 23 6 2.4591 0.0200 2.3238 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.4495 -1.4979 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0462 -2.1182 30 1 2.5044 1.0619 -4.8011 31 1 3.8755 -0.0810 -8.9463 32 1 1.7235 -2.6618 0.4137 33 1 2.5533 -3.8240 2.4192 34 1 3.2528 -0.0596 4.3071 35 1 2.4316 1.0993 2.2961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049506391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:30 Heat of formation + Delta-G solvation = -76.888662 kcal Electronic energy + Delta-G solvation = -19120.341806 eV Core-core repulsion = 15838.729246 eV Total energy + Delta-G solvation = -3281.612560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -49.86115 -40.58791 -40.00467 -37.28837 -35.93645 -33.75082 -32.56962 -32.01109 -29.73053 -28.07656 -25.70753 -24.40406 -23.67181 -21.53059 -21.27793 -20.30230 -18.65661 -17.89871 -17.41109 -16.98689 -16.56397 -16.46410 -16.32272 -15.68079 -15.31696 -15.07972 -14.86133 -14.51139 -14.38356 -14.21022 -14.01876 -13.86891 -13.50972 -13.14055 -12.95317 -12.72381 -12.42170 -12.39636 -12.01858 -11.94077 -11.76761 -11.49772 -10.43150 -10.23442 -9.99108 -9.52429 -9.25544 -8.40095 -6.01222 0.21383 0.35636 1.31416 1.37623 1.46272 1.98190 2.24658 2.59873 2.82392 3.16558 3.34812 3.44638 3.81720 3.85568 4.01758 4.14475 4.27294 4.32087 4.44546 4.48166 4.55355 4.61224 4.80803 4.92212 5.04698 5.12576 5.22384 5.28030 5.36509 5.52198 5.60322 5.93250 5.98589 6.11980 6.39045 6.61348 6.89782 7.41675 7.98859 8.77733 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.037629 B = 0.003463 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.935481 B = 8084.548967 C = 8410.327233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.125 3.875 3 H 0.109 0.891 4 N -0.681 5.681 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.616 6.616 8 N -0.591 5.591 9 C -0.329 4.329 10 H 0.053 0.947 11 C -0.017 4.017 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.277 1.277 16 H -0.228 1.228 17 C -0.080 4.080 18 C -0.081 4.081 19 C -0.164 4.164 20 C 0.069 3.931 21 F -0.152 7.152 22 C -0.154 4.154 23 C -0.084 4.084 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.345 0.655 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.390 0.610 31 H 0.279 0.721 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 8.809 21.881 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 H 0.127 0.873 4 N -0.314 5.314 5 C -0.069 4.069 6 C 0.236 3.764 7 O -0.500 6.500 8 N -0.233 5.233 9 C -0.459 4.459 10 H 0.072 0.928 11 C -0.215 4.215 12 N -0.577 5.577 13 Si 0.786 3.214 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.151 1.151 17 C -0.081 4.081 18 C -0.100 4.100 19 C -0.183 4.183 20 C 0.050 3.950 21 F -0.131 7.131 22 C -0.173 4.173 23 C -0.103 4.103 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.164 0.836 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.226 0.774 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.127 8.063 21.921 24.420 hybrid contribution -0.632 0.054 -0.802 1.022 sum -7.759 8.117 21.120 23.919 Atomic orbital electron populations 1.22464 0.94771 1.02630 1.03474 1.20559 0.93740 0.97772 0.86385 0.87347 1.60159 1.58844 1.09326 1.03023 1.21666 1.02044 0.95358 0.87820 1.21062 0.82427 0.87962 0.84993 1.90549 1.55325 1.18842 1.85282 1.42021 1.60602 1.11874 1.08775 1.19007 1.42338 0.96078 0.88443 0.92850 1.26143 0.96398 1.05129 0.93818 1.69808 1.46391 1.39658 1.01858 0.85343 0.80264 0.76337 0.79422 1.18207 1.20184 1.15109 1.20023 0.98934 0.93572 0.95530 1.20925 0.97597 0.94786 0.96675 1.21287 1.02418 1.01312 0.93271 1.17980 1.01424 0.91679 0.83920 1.91456 1.87200 1.82624 1.51827 1.21351 1.02895 0.91935 1.01072 1.21155 0.96446 1.01478 0.91172 0.91544 0.92786 0.90145 0.83562 0.90089 0.86551 0.77391 0.91174 0.85514 0.84435 0.82843 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.14 71.98 0.66 -1.96 16 2 C 0.12 2.30 2.79 44.17 0.12 2.42 16 3 H 0.11 1.59 7.66 -2.39 -0.02 1.57 16 4 N -0.68 -18.44 5.33 -499.44 -2.66 -21.10 16 5 C 0.06 1.77 5.97 85.56 0.51 2.28 16 6 C 0.45 19.63 7.82 87.66 0.69 20.32 16 7 O -0.62 -33.72 15.78 -3.07 -0.05 -33.77 16 8 N -0.59 -27.25 5.09 -306.99 -1.56 -28.82 16 9 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 10 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 11 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 12 N -0.94 -56.45 13.96 21.66 0.30 -56.15 16 13 Si 0.97 38.10 27.73 68.60 1.90 40.01 16 14 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 15 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 17 C -0.08 -1.59 4.95 -19.86 -0.10 -1.69 16 18 C -0.08 -1.85 9.32 22.26 0.21 -1.65 16 19 C -0.16 -3.69 10.03 22.31 0.22 -3.47 16 20 C 0.07 1.53 7.30 22.38 0.16 1.69 16 21 F -0.15 -3.59 17.27 44.97 0.78 -2.82 16 22 C -0.15 -2.73 10.03 22.31 0.22 -2.51 16 23 C -0.08 -1.37 9.67 22.26 0.22 -1.16 16 24 H 0.07 0.94 7.45 -2.39 -0.02 0.93 16 25 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.34 10.10 7.52 -89.69 -0.67 9.42 16 28 H 0.08 1.77 7.44 -2.39 -0.02 1.76 16 29 H 0.12 2.69 8.05 -2.39 -0.02 2.67 16 30 H 0.39 14.66 5.76 -92.71 -0.53 14.13 16 31 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.13 2.99 7.25 -2.91 -0.02 2.97 16 33 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.16 1.59 8.04 -2.91 -0.02 1.57 16 Total: -1.00 -76.00 305.82 2.80 -73.21 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.14 Total: 33.95 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 4.23 Total: -4.51 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.92 Total: -106.07 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.05 Total: -33.77 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.01 kcal Total: -76.00 2.80 -73.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049506391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.682 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds