Wall clock time and date at job start Mon Mar 30 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46523 * 2 1 4 4 N 1.46893 * 109.47153 * 119.99955 * 2 1 3 5 5 C 1.46900 * 111.00285 * 275.00034 * 4 2 1 6 6 C 1.50707 * 109.47612 * 179.97438 * 5 4 2 7 7 O 1.21288 * 119.99616 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.37096 * 120.00140 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99633 * 0.02562 * 9 8 6 11 11 C 1.38954 * 120.00210 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99826 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99865 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47174 * 89.99840 * 13 11 9 15 15 H 1.48501 * 109.46637 * 210.00070 * 13 11 9 16 16 H 1.48497 * 109.46805 * 329.99475 * 13 11 9 17 17 C 1.50696 * 109.46992 * 239.99974 * 2 1 3 18 18 C 1.38248 * 119.97128 * 99.99751 * 17 2 1 19 19 C 1.38196 * 120.02483 * 179.97438 * 18 17 2 20 20 C 1.38458 * 119.97492 * 0.02562 * 19 18 17 21 21 F 1.35104 * 120.02786 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.94675 * 0.24873 * 20 19 18 23 23 C 1.38196 * 119.97501 * 359.51590 * 22 20 19 24 24 H 1.08992 * 109.47602 * 59.99977 * 1 2 3 25 25 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47251 * 299.99826 * 1 2 3 27 27 H 1.00903 * 111.00344 * 38.95198 * 4 2 1 28 28 H 1.08998 * 109.47257 * 300.00373 * 5 4 2 29 29 H 1.09007 * 109.47133 * 60.00103 * 5 4 2 30 30 H 0.97008 * 120.00130 * 0.02562 * 8 6 5 31 31 H 0.97001 * 119.99634 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.98881 * 0.02562 * 18 17 2 33 33 H 1.07995 * 120.01604 * 180.02562 * 19 18 17 34 34 H 1.08007 * 120.01064 * 179.75151 * 22 20 19 35 35 H 1.07993 * 119.98776 * 180.24915 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5874 -0.5218 3.5561 7 8 2.8678 -1.6987 3.4703 8 7 2.7273 0.1202 4.7327 9 6 3.1871 -0.5568 5.8326 10 1 3.4376 -1.6046 5.7560 11 6 3.3319 0.1052 7.0457 12 7 3.7731 -0.5437 8.0998 13 14 2.8993 1.9177 7.1780 14 1 1.4700 2.0592 7.5548 15 1 3.7501 2.5551 8.2148 16 1 3.1343 2.5793 5.8695 17 6 2.0323 -0.7104 -1.2304 18 6 2.4586 0.0201 -2.3240 19 6 2.9199 -0.6302 -3.4528 20 6 2.9546 -2.0139 -3.4883 21 9 3.4049 -2.6508 -4.5915 22 6 2.5221 -2.7445 -2.3945 23 6 2.0658 -2.0920 -1.2650 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.4496 -1.4979 1.4101 28 1 2.7588 1.0462 2.1182 29 1 1.0870 0.6163 2.5526 30 1 2.5027 1.0614 4.8015 31 1 3.8738 -0.0816 8.9467 32 1 2.4318 1.0994 -2.2960 33 1 3.2532 -0.0595 -4.3069 34 1 2.5450 -3.8240 -2.4227 35 1 1.7322 -2.6616 -0.4103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049506393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:36 Heat of formation + Delta-G solvation = -53.779335 kcal Electronic energy + Delta-G solvation = -19119.387558 eV Core-core repulsion = 15838.777094 eV Total energy + Delta-G solvation = -3280.610464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.97025 -39.59290 -38.41378 -36.21475 -33.97161 -31.78075 -31.45600 -31.18265 -28.88219 -26.58485 -24.14754 -23.50773 -22.74488 -20.67812 -19.43299 -18.44971 -17.76520 -16.48467 -16.45859 -15.67002 -15.50582 -15.24318 -14.82628 -14.50288 -14.28232 -13.77324 -13.59207 -13.51079 -13.16845 -13.01039 -12.84819 -12.39205 -12.28347 -12.01146 -11.68857 -11.61213 -11.19650 -11.17052 -10.97477 -10.60956 -9.98839 -9.58667 -9.18822 -8.65695 -8.63173 -8.21374 -8.15700 -6.32269 -3.83800 1.05239 1.15879 3.01452 3.05194 3.13932 3.47338 3.72499 4.05129 4.09671 4.17345 4.59094 4.65538 4.78230 4.84561 5.01403 5.08724 5.19994 5.23153 5.30987 5.49347 5.52881 5.66269 5.79208 5.81445 5.88452 5.92688 6.00177 6.02648 6.18785 6.43179 6.79536 7.06529 7.50470 7.56938 8.13252 8.58386 8.93768 9.41110 9.81169 10.80883 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.037639 B = 0.003462 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.725780 B = 8084.858674 C = 8410.681742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 H 0.088 0.912 4 N -0.661 5.661 5 C 0.048 3.952 6 C 0.450 3.550 7 O -0.564 6.564 8 N -0.590 5.590 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.072 4.072 18 C -0.089 4.089 19 C -0.156 4.156 20 C 0.088 3.912 21 F -0.145 7.145 22 C -0.153 4.153 23 C -0.065 4.065 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.352 0.648 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 4.819 -20.218 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.010 3.990 3 H 0.106 0.894 4 N -0.293 5.293 5 C -0.085 4.085 6 C 0.235 3.765 7 O -0.446 6.446 8 N -0.230 5.230 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.073 4.073 18 C -0.107 4.107 19 C -0.175 4.175 20 C 0.069 3.931 21 F -0.124 7.124 22 C -0.172 4.172 23 C -0.084 4.084 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.172 0.828 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.855 4.063 -20.218 21.437 hybrid contribution -1.039 1.459 0.342 1.824 sum -6.894 5.522 -19.876 21.750 Atomic orbital electron populations 1.22521 0.96200 1.02722 1.02430 1.20471 0.92645 0.97446 0.88408 0.89377 1.60175 1.57777 1.09094 1.02267 1.21744 1.00048 0.95834 0.90834 1.19694 0.84796 0.88270 0.83716 1.90567 1.53800 1.16038 1.84210 1.42202 1.60159 1.11069 1.09543 1.19436 1.40352 0.97964 0.85665 0.86283 1.25043 0.97456 0.98411 0.95253 1.69623 1.45046 1.36624 1.00828 0.86665 0.79247 0.84942 0.78499 1.19667 1.20167 1.19461 1.19858 0.98778 0.93830 0.94804 1.20838 0.97747 1.00014 0.92123 1.21041 1.03761 0.92512 1.00153 1.17733 1.00556 0.90787 0.84046 1.91481 1.86999 1.82346 1.51542 1.21170 1.02181 1.00789 0.93069 1.20874 0.96749 0.94023 0.96705 0.91881 0.92014 0.92009 0.82780 0.89392 0.93570 0.79693 0.91602 0.85222 0.85037 0.84868 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.14 37.16 0.34 -1.30 16 2 C 0.12 1.31 2.79 -68.87 -0.19 1.12 16 3 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 4 N -0.66 -9.60 5.33 -109.22 -0.58 -10.18 16 5 C 0.05 0.75 5.97 -4.97 -0.03 0.72 16 6 C 0.45 9.98 7.82 -10.99 -0.09 9.89 16 7 O -0.56 -14.91 15.78 5.55 0.09 -14.83 16 8 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 9 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 10 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 11 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 12 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 13 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 17 C -0.07 -0.80 4.96 -104.62 -0.52 -1.32 16 18 C -0.09 -0.87 9.67 -39.59 -0.38 -1.25 16 19 C -0.16 -1.57 10.03 -39.52 -0.40 -1.97 16 20 C 0.09 1.01 7.30 -39.42 -0.29 0.72 16 21 F -0.14 -1.74 17.27 2.25 0.04 -1.71 16 22 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 23 C -0.07 -0.75 9.32 -39.59 -0.37 -1.12 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 26 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 27 H 0.35 5.24 7.52 -39.29 -0.30 4.94 16 28 H 0.09 1.24 8.06 -51.93 -0.42 0.83 16 29 H 0.05 0.62 7.44 -51.92 -0.39 0.23 16 30 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.13 0.97 8.04 -52.49 -0.42 0.55 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.13 1.53 7.24 -52.49 -0.38 1.15 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -32.30 305.81 -6.58 -38.88 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.17 Total: 11.91 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.57 Total: -4.34 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.14 Total: -48.96 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.09 Total: -14.83 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.30 -6.58 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049506393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.898 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds