Wall clock time and date at job start Mon Mar 30 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47211 * 2 1 4 4 N 1.46897 * 109.47216 * 239.99744 * 2 1 3 5 5 C 1.46902 * 111.00278 * 84.99948 * 4 2 1 6 6 C 1.50700 * 109.47135 * 179.97438 * 5 4 2 7 7 O 1.21291 * 120.00041 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99767 * 179.97438 * 6 5 4 9 9 C 1.37096 * 120.00362 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99517 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00456 * 180.02562 * 9 8 6 12 12 N 1.31410 * 119.99983 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99918 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47346 * 90.00053 * 13 11 9 15 15 H 1.48501 * 109.47051 * 210.00043 * 13 11 9 16 16 H 1.48499 * 109.47062 * 329.99744 * 13 11 9 17 17 C 1.50706 * 109.46932 * 119.99926 * 2 1 3 18 18 C 1.38216 * 120.01546 * 100.00131 * 17 2 1 19 19 C 1.38217 * 120.02581 * 179.97438 * 18 17 2 20 20 C 1.38265 * 120.05343 * 0.02562 * 19 18 17 21 21 C 1.38181 * 120.02597 * 359.97438 * 20 19 18 22 22 C 1.38443 * 120.00897 * 279.97698 * 17 2 1 23 23 F 1.35099 * 120.02540 * 0.04305 * 22 17 2 24 24 H 1.08994 * 109.47243 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.46986 * 60.00650 * 1 2 3 26 26 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 27 27 H 1.00907 * 110.99897 * 208.95567 * 4 2 1 28 28 H 1.09002 * 109.46435 * 299.99867 * 5 4 2 29 29 H 1.08998 * 109.46814 * 59.99475 * 5 4 2 30 30 H 0.97002 * 120.00233 * 359.97438 * 8 6 5 31 31 H 0.97002 * 119.99807 * 180.02562 * 12 11 9 32 32 H 1.08000 * 119.98383 * 0.02562 * 18 17 2 33 33 H 1.07997 * 119.97673 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.99414 * 179.72576 * 20 19 18 35 35 H 1.08002 * 120.01438 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5886 -0.5217 -3.5557 7 8 2.8689 -1.6987 -3.4698 8 7 2.7287 0.1203 -4.7323 9 6 3.1896 -0.5565 -5.8319 10 1 3.4400 -1.6043 -5.7553 11 6 3.3346 0.1055 -7.0449 12 7 3.7759 -0.5435 -8.0989 13 14 2.9022 1.9179 -7.1773 14 1 4.1024 2.7368 -6.8704 15 1 2.4384 2.2167 -8.5560 16 1 1.8221 2.2410 -6.2108 17 6 2.0323 -0.7104 1.2305 18 6 2.4587 -2.0224 1.1458 19 6 2.9200 -2.6740 2.2741 20 6 2.9549 -2.0146 3.4889 21 6 2.5291 -0.7029 3.5761 22 6 2.0673 -0.0489 2.4462 23 9 1.6504 1.2334 2.5302 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9174 -1.1206 -1.0286 28 1 1.0870 0.6161 -2.5525 29 1 2.7588 1.0461 -2.1182 30 1 2.5035 1.0612 -4.8013 31 1 3.8775 -0.0812 -8.9457 32 1 2.4323 -2.5384 0.1974 33 1 3.2526 -3.6993 2.2071 34 1 3.3113 -2.5261 4.3708 35 1 2.5569 -0.1879 4.5250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049529864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:40 Heat of formation + Delta-G solvation = -49.925699 kcal Electronic energy + Delta-G solvation = -19425.224327 eV Core-core repulsion = 16144.780969 eV Total energy + Delta-G solvation = -3280.443358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.03800 -39.55003 -38.40324 -36.26494 -33.96814 -31.86888 -31.53219 -30.75035 -29.18423 -26.74283 -24.25951 -23.47861 -22.44007 -20.49405 -19.42732 -18.48972 -17.71578 -16.70195 -16.42922 -15.80408 -15.58878 -15.35536 -14.91164 -14.45317 -14.23381 -13.93753 -13.65324 -13.30830 -13.17369 -12.73523 -12.49553 -12.30823 -12.17367 -11.99749 -11.80143 -11.79017 -11.24606 -11.11624 -10.81205 -10.59320 -9.97720 -9.57515 -9.12476 -8.84004 -8.58046 -8.23973 -8.17091 -6.31304 -3.82757 0.97838 1.05720 3.03169 3.07046 3.15340 3.42801 3.73516 3.94600 4.10281 4.15687 4.43128 4.64667 4.79162 4.85469 5.09422 5.13531 5.21233 5.28531 5.36078 5.60918 5.66491 5.74715 5.80219 5.84811 5.91760 5.94353 5.98960 6.20498 6.26662 6.27512 6.73226 7.07333 7.50987 7.58049 8.14086 8.59441 8.94584 9.42196 9.82075 10.81795 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034339 B = 0.003873 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.208252 B = 7227.526230 C = 7720.171335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.123 3.877 3 H 0.055 0.945 4 N -0.661 5.661 5 C 0.046 3.954 6 C 0.451 3.549 7 O -0.565 6.565 8 N -0.590 5.590 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.042 3.958 12 N -0.881 5.881 13 Si 0.879 3.121 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.118 4.118 18 C -0.078 4.078 19 C -0.128 4.128 20 C -0.097 4.097 21 C -0.157 4.157 22 C 0.099 3.901 23 F -0.139 7.139 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.352 0.648 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.371 0.629 31 H 0.273 0.727 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 3.179 21.703 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 H 0.073 0.927 4 N -0.296 5.296 5 C -0.086 4.086 6 C 0.237 3.763 7 O -0.447 6.447 8 N -0.229 5.229 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.161 4.161 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.201 1.201 16 H -0.195 1.195 17 C -0.119 4.119 18 C -0.096 4.096 19 C -0.146 4.146 20 C -0.115 4.115 21 C -0.176 4.176 22 C 0.080 3.920 23 F -0.118 7.118 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.174 0.826 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.379 2.179 21.342 21.895 hybrid contribution 0.390 2.286 -0.053 2.319 sum -3.990 4.465 21.289 22.115 Atomic orbital electron populations 1.21760 0.93137 1.02859 1.01429 1.20355 0.96475 0.95222 0.86593 0.92723 1.60282 1.34972 1.31913 1.02416 1.21777 1.01528 0.94051 0.91270 1.19660 0.84514 0.88186 0.83976 1.90557 1.53897 1.15827 1.84411 1.42200 1.60008 1.11160 1.09575 1.19433 1.40054 0.98047 0.85856 0.86262 1.25035 0.97458 0.98422 0.95220 1.69622 1.45116 1.36537 1.00847 0.86672 0.79020 0.85124 0.78592 1.19654 1.20150 1.19450 1.20062 1.02151 0.95778 0.93896 1.21196 0.95463 0.92970 0.99998 1.21287 1.00193 1.00638 0.92502 1.21023 0.98596 0.93666 0.98230 1.21085 1.02737 0.96156 0.97640 1.17541 1.00716 0.79383 0.94399 1.91480 1.87896 1.35476 1.96949 0.92674 0.91962 0.91534 0.82621 0.89278 0.93604 0.79669 0.91608 0.83298 0.85158 0.85222 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.39 37.16 0.35 -1.27 16 2 C 0.12 1.61 2.55 -68.86 -0.18 1.43 16 3 H 0.05 0.71 7.60 -51.93 -0.39 0.31 16 4 N -0.66 -10.31 5.23 -109.22 -0.57 -10.88 16 5 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 6 C 0.45 10.22 7.82 -10.99 -0.09 10.14 16 7 O -0.56 -15.03 15.78 5.55 0.09 -14.94 16 8 N -0.59 -14.08 5.09 -10.97 -0.06 -14.14 16 9 C -0.31 -8.65 10.16 -14.94 -0.15 -8.80 16 10 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 11 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 12 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 13 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 17 C -0.12 -1.44 5.00 -104.55 -0.52 -1.96 16 18 C -0.08 -0.91 8.87 -39.60 -0.35 -1.26 16 19 C -0.13 -1.23 10.04 -39.58 -0.40 -1.62 16 20 C -0.10 -0.84 10.04 -39.59 -0.40 -1.23 16 21 C -0.16 -1.51 10.03 -39.51 -0.40 -1.91 16 22 C 0.10 1.15 7.24 -39.42 -0.29 0.87 16 23 F -0.14 -1.71 16.66 2.25 0.04 -1.67 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.35 5.65 6.67 -39.29 -0.26 5.39 16 28 H 0.09 1.35 7.44 -51.93 -0.39 0.96 16 29 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 30 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.15 1.85 6.70 -52.49 -0.35 1.50 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -32.00 303.64 -6.51 -38.51 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -4.11 Total: 12.68 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.54 Total: -3.82 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.15 Total: -50.02 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.00 -6.51 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049529864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.416 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds