Wall clock time and date at job start Mon Mar 30 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47211 * 2 1 4 4 N 1.46897 * 109.47216 * 239.99744 * 2 1 3 5 5 C 1.46902 * 111.00278 * 84.99948 * 4 2 1 6 6 C 1.50700 * 109.47135 * 179.97438 * 5 4 2 7 7 O 1.21291 * 120.00041 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99767 * 179.97438 * 6 5 4 9 9 C 1.37096 * 120.00362 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99517 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00456 * 180.02562 * 9 8 6 12 12 N 1.31410 * 119.99983 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99918 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47346 * 90.00053 * 13 11 9 15 15 H 1.48501 * 109.47051 * 210.00043 * 13 11 9 16 16 H 1.48499 * 109.47062 * 329.99744 * 13 11 9 17 17 C 1.50706 * 109.46932 * 119.99926 * 2 1 3 18 18 C 1.38216 * 120.01546 * 100.00131 * 17 2 1 19 19 C 1.38217 * 120.02581 * 179.97438 * 18 17 2 20 20 C 1.38265 * 120.05343 * 0.02562 * 19 18 17 21 21 C 1.38181 * 120.02597 * 359.97438 * 20 19 18 22 22 C 1.38443 * 120.00897 * 279.97698 * 17 2 1 23 23 F 1.35099 * 120.02540 * 0.04305 * 22 17 2 24 24 H 1.08994 * 109.47243 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.46986 * 60.00650 * 1 2 3 26 26 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 27 27 H 1.00907 * 110.99897 * 208.95567 * 4 2 1 28 28 H 1.09002 * 109.46435 * 299.99867 * 5 4 2 29 29 H 1.08998 * 109.46814 * 59.99475 * 5 4 2 30 30 H 0.97002 * 120.00233 * 359.97438 * 8 6 5 31 31 H 0.97002 * 119.99807 * 180.02562 * 12 11 9 32 32 H 1.08000 * 119.98383 * 0.02562 * 18 17 2 33 33 H 1.07997 * 119.97673 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.99414 * 179.72576 * 20 19 18 35 35 H 1.08002 * 120.01438 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5886 -0.5217 -3.5557 7 8 2.8689 -1.6987 -3.4698 8 7 2.7287 0.1203 -4.7323 9 6 3.1896 -0.5565 -5.8319 10 1 3.4400 -1.6043 -5.7553 11 6 3.3346 0.1055 -7.0449 12 7 3.7759 -0.5435 -8.0989 13 14 2.9022 1.9179 -7.1773 14 1 4.1024 2.7368 -6.8704 15 1 2.4384 2.2167 -8.5560 16 1 1.8221 2.2410 -6.2108 17 6 2.0323 -0.7104 1.2305 18 6 2.4587 -2.0224 1.1458 19 6 2.9200 -2.6740 2.2741 20 6 2.9549 -2.0146 3.4889 21 6 2.5291 -0.7029 3.5761 22 6 2.0673 -0.0489 2.4462 23 9 1.6504 1.2334 2.5302 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9174 -1.1206 -1.0286 28 1 1.0870 0.6161 -2.5525 29 1 2.7588 1.0461 -2.1182 30 1 2.5035 1.0612 -4.8013 31 1 3.8775 -0.0812 -8.9457 32 1 2.4323 -2.5384 0.1974 33 1 3.2526 -3.6993 2.2071 34 1 3.3113 -2.5261 4.3708 35 1 2.5569 -0.1879 4.5250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049529864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:39 Heat of formation + Delta-G solvation = -72.507843 kcal Electronic energy + Delta-G solvation = -19426.203562 eV Core-core repulsion = 16144.780969 eV Total energy + Delta-G solvation = -3281.422593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.90420 -40.60825 -40.00389 -37.41256 -35.97384 -33.78008 -32.82692 -31.53525 -30.10911 -28.31679 -25.89731 -24.44830 -23.35383 -21.44977 -21.31665 -20.34450 -18.71542 -17.92369 -17.43056 -17.17447 -16.70314 -16.60715 -16.39537 -15.68657 -15.42689 -15.12076 -14.97303 -14.75775 -14.45230 -14.10989 -13.94910 -13.60567 -13.37342 -13.05508 -12.96622 -12.83337 -12.69189 -12.42077 -12.12134 -11.98424 -11.71081 -11.52292 -10.47113 -10.25944 -9.91514 -9.65080 -9.43388 -8.41992 -6.02979 0.18332 0.27243 1.30367 1.34960 1.44225 1.93370 2.22469 2.61182 2.66319 3.14322 3.26082 3.36738 3.52210 3.88680 4.07692 4.10117 4.23977 4.32141 4.39856 4.42032 4.50591 4.51668 4.78607 4.88707 4.99115 5.12371 5.19208 5.30071 5.37447 5.49628 5.52939 5.88239 5.95835 6.01278 6.27216 6.58414 6.86636 7.38170 7.93937 8.75569 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034339 B = 0.003873 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.208252 B = 7227.526230 C = 7720.171335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.126 3.874 3 H 0.060 0.940 4 N -0.674 5.674 5 C 0.059 3.941 6 C 0.450 3.550 7 O -0.612 6.612 8 N -0.590 5.590 9 C -0.329 4.329 10 H 0.056 0.944 11 C -0.014 4.014 12 N -0.933 5.933 13 Si 0.964 3.036 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.232 1.232 17 C -0.132 4.132 18 C -0.095 4.095 19 C -0.129 4.129 20 C -0.089 4.089 21 C -0.155 4.155 22 C 0.083 3.917 23 F -0.146 7.146 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.347 0.653 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.390 0.610 31 H 0.279 0.721 32 H 0.132 0.868 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 5.682 24.041 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.017 3.983 3 H 0.078 0.922 4 N -0.308 5.308 5 C -0.073 4.073 6 C 0.238 3.762 7 O -0.496 6.496 8 N -0.232 5.232 9 C -0.459 4.459 10 H 0.075 0.925 11 C -0.213 4.213 12 N -0.574 5.574 13 Si 0.784 3.216 14 H -0.182 1.182 15 H -0.200 1.200 16 H -0.155 1.155 17 C -0.133 4.133 18 C -0.114 4.114 19 C -0.147 4.147 20 C -0.107 4.107 21 C -0.173 4.173 22 C 0.063 3.937 23 F -0.124 7.124 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.167 0.833 28 H 0.133 0.867 29 H 0.093 0.907 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.167 0.833 34 H 0.181 0.819 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.163 4.691 23.711 24.716 hybrid contribution 0.674 1.333 -0.698 1.649 sum -4.489 6.023 23.014 24.209 Atomic orbital electron populations 1.21738 0.92504 1.02435 1.02151 1.20367 0.96871 0.95202 0.85846 0.92235 1.60289 1.34837 1.32378 1.03263 1.21702 1.03104 0.93840 0.88647 1.20842 0.82360 0.87899 0.85075 1.90537 1.55299 1.18385 1.85369 1.42019 1.60439 1.11887 1.08812 1.19017 1.42278 0.96178 0.88384 0.92542 1.26100 0.96370 1.04953 0.93833 1.69801 1.46224 1.39559 1.01817 0.85377 0.80197 0.76570 0.79467 1.18153 1.19957 1.15528 1.20019 1.03238 0.96087 0.93957 1.21151 0.96877 0.93130 1.00205 1.21563 0.99311 1.01517 0.92278 1.21409 0.97169 0.93287 0.98851 1.21426 1.01504 0.96537 0.97881 1.17717 1.01731 0.79352 0.94863 1.91460 1.88118 1.35876 1.96989 0.91521 0.91605 0.92528 0.83261 0.86749 0.90660 0.77478 0.91108 0.85031 0.83342 0.81891 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.39 71.98 0.68 -2.28 16 2 C 0.13 3.13 2.55 44.17 0.11 3.24 16 3 H 0.06 1.42 7.60 -2.39 -0.02 1.40 16 4 N -0.67 -20.58 5.23 -499.45 -2.61 -23.20 16 5 C 0.06 1.87 5.97 85.56 0.51 2.38 16 6 C 0.45 20.51 7.82 87.66 0.69 21.19 16 7 O -0.61 -33.91 15.78 -3.06 -0.05 -33.96 16 8 N -0.59 -28.03 5.09 -306.99 -1.56 -29.59 16 9 C -0.33 -19.40 10.16 84.04 0.85 -18.54 16 10 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 11 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 12 N -0.93 -56.43 13.96 21.66 0.30 -56.13 16 13 Si 0.96 38.93 27.74 68.60 1.90 40.83 16 14 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 16 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 17 C -0.13 -3.10 5.00 -19.82 -0.10 -3.20 16 18 C -0.10 -2.18 8.87 22.26 0.20 -1.98 16 19 C -0.13 -2.24 10.04 22.27 0.22 -2.02 16 20 C -0.09 -1.27 10.04 22.26 0.22 -1.05 16 21 C -0.15 -2.55 10.03 22.31 0.22 -2.33 16 22 C 0.08 1.79 7.24 22.38 0.16 1.95 16 23 F -0.15 -3.31 16.66 44.97 0.75 -2.56 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.42 7.45 -2.39 -0.02 1.40 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.35 11.27 6.67 -89.69 -0.60 10.67 16 28 H 0.11 3.09 7.44 -2.39 -0.02 3.07 16 29 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 30 H 0.39 15.34 5.76 -92.71 -0.53 14.81 16 31 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.13 3.42 6.70 -2.91 -0.02 3.40 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -74.26 303.64 2.90 -71.35 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.06 Total: 36.18 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 4.24 Total: -2.94 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -3.87 Total: -108.91 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.05 Total: -33.96 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.75 Total: -2.56 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.83 kcal Total: -74.26 2.90 -71.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049529864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.154 kcal (2) G-P(sol) polarization free energy of solvation -74.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds