Wall clock time and date at job start Mon Mar 30 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47309 * 2 1 4 4 N 1.46906 * 109.47012 * 240.00398 * 2 1 3 5 5 C 1.46895 * 111.00198 * 84.99945 * 4 2 1 6 6 C 1.50704 * 109.47018 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99912 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99726 * 179.97438 * 6 5 4 9 9 C 1.37098 * 119.99944 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00043 * 359.97438 * 9 8 6 11 11 C 1.38956 * 120.00118 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99988 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00038 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47071 * 59.99554 * 13 11 9 15 15 H 1.48497 * 109.47139 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47245 * 299.99747 * 13 11 9 17 17 C 1.50699 * 109.47417 * 120.00533 * 2 1 3 18 18 C 1.38264 * 119.99175 * 80.01725 * 17 2 1 19 19 C 1.38224 * 120.05371 * 180.02562 * 18 17 2 20 20 C 1.38215 * 120.02235 * 359.97438 * 19 18 17 21 21 C 1.38437 * 119.97975 * 359.70450 * 20 19 18 22 22 F 1.35099 * 120.02745 * 180.31857 * 21 20 19 23 23 C 1.38183 * 119.98467 * 260.00152 * 17 2 1 24 24 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46845 * 299.99941 * 1 2 3 26 26 H 1.08998 * 109.47096 * 59.99651 * 1 2 3 27 27 H 1.00905 * 110.99589 * 321.04130 * 4 2 1 28 28 H 1.09002 * 109.47154 * 300.00074 * 5 4 2 29 29 H 1.09003 * 109.47077 * 59.99864 * 5 4 2 30 30 H 0.97001 * 120.00232 * 0.02562 * 8 6 5 31 31 H 0.97000 * 120.00248 * 180.02562 * 12 11 9 32 32 H 1.08004 * 119.96758 * 359.97438 * 18 17 2 33 33 H 1.08000 * 119.98735 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.00869 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01017 * 359.97438 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5873 -0.5218 -3.5561 7 8 2.8677 -1.6987 -3.4703 8 7 2.7272 0.1203 -4.7328 9 6 3.1870 -0.5567 -5.8327 10 1 3.4374 -1.6045 -5.7561 11 6 3.3318 0.1054 -7.0457 12 7 3.0275 1.3804 -7.1388 13 14 3.9575 -0.8173 -8.5445 14 1 3.0355 -1.9391 -8.8558 15 1 4.0204 0.1076 -9.7046 16 1 5.3136 -1.3541 -8.2649 17 6 2.0324 -0.7105 1.2304 18 6 2.0671 -2.0923 1.2648 19 6 2.5272 -2.7453 2.3928 20 6 2.9536 -2.0174 3.4877 21 6 2.9256 -0.6338 3.4520 22 9 3.3483 0.0788 4.5191 23 6 2.4586 0.0193 2.3236 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.4495 -1.4979 -1.4101 28 1 1.0871 0.6164 -2.5525 29 1 2.7589 1.0463 -2.1182 30 1 2.5033 1.0616 -4.8013 31 1 3.1282 1.8425 -7.9857 32 1 1.7337 -2.6618 0.4098 33 1 2.5542 -3.8246 2.4184 34 1 3.3135 -2.5278 4.3688 35 1 2.4320 1.0986 2.2963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049529946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:46 Heat of formation + Delta-G solvation = -60.896893 kcal Electronic energy + Delta-G solvation = -19108.511669 eV Core-core repulsion = 15827.592565 eV Total energy + Delta-G solvation = -3280.919105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.95328 -39.52573 -38.22903 -36.16223 -33.91863 -31.80857 -31.18599 -30.52153 -29.10682 -26.40635 -24.35883 -23.41946 -22.72885 -20.63762 -19.33024 -17.95772 -17.42766 -16.41712 -16.19639 -15.94045 -15.65182 -15.28383 -14.67766 -14.52885 -14.07774 -13.90276 -13.72112 -13.38853 -13.14262 -13.00320 -12.30720 -12.19406 -12.06152 -11.75503 -11.56618 -11.49031 -11.30038 -11.02409 -10.86814 -10.44774 -10.22068 -9.50748 -9.04709 -8.68959 -8.50163 -8.08651 -7.96867 -6.42416 -3.83311 1.13227 1.15527 3.19760 3.25546 3.29869 3.52232 3.89736 3.99090 4.17610 4.38307 4.61557 4.74937 4.95093 5.01354 5.13243 5.17384 5.23027 5.24881 5.33997 5.52523 5.62900 5.77373 5.81024 5.96755 5.98628 6.02704 6.09246 6.23712 6.30500 6.47158 6.84309 7.17463 7.54353 7.59588 8.05204 8.60328 9.16990 9.53344 10.04708 10.75249 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038067 B = 0.003314 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.371473 B = 8447.711340 C = 8626.154119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 H 0.089 0.911 4 N -0.660 5.660 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.583 6.583 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.033 4.033 18 C -0.104 4.104 19 C -0.092 4.092 20 C -0.162 4.162 21 C 0.093 3.907 22 F -0.145 7.145 23 C -0.151 4.151 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.351 0.649 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.392 0.608 31 H 0.272 0.728 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -1.104 17.471 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.008 3.992 3 H 0.107 0.893 4 N -0.292 5.292 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.033 4.033 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.180 4.180 21 C 0.074 3.926 22 F -0.123 7.123 23 C -0.170 4.170 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.171 0.829 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.225 0.775 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.005 -1.657 17.528 18.056 hybrid contribution -0.606 0.501 -0.849 1.157 sum -4.611 -1.156 16.679 17.343 Atomic orbital electron populations 1.22512 0.96052 1.02711 1.02538 1.20494 0.92759 0.97522 0.88416 0.89297 1.60167 1.57609 1.09124 1.02310 1.21711 1.00048 0.95703 0.90728 1.19785 0.85232 0.88246 0.84149 1.90522 1.55336 1.16282 1.84608 1.41849 1.57740 1.12452 1.07912 1.19660 1.40116 0.96456 0.86769 0.87962 1.25262 0.97607 0.95767 0.99257 1.69602 1.48583 1.08868 1.27286 0.85916 0.79478 0.78815 0.80003 1.19911 1.20980 1.19859 1.19648 0.96177 0.93737 0.93777 1.21084 0.99228 0.93999 0.97935 1.21019 0.97423 1.00164 0.92412 1.21093 1.04193 0.92090 1.00669 1.17627 1.00628 0.89716 0.84671 1.91480 1.87895 1.78560 1.54387 1.20952 1.02593 1.00727 0.92776 0.92004 0.91908 0.91833 0.82893 0.93654 0.89511 0.77455 0.91806 0.85041 0.85116 0.85164 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.14 37.16 0.34 -1.47 16 2 C 0.12 1.42 2.79 -68.86 -0.19 1.23 16 3 H 0.09 1.01 7.66 -51.93 -0.40 0.62 16 4 N -0.66 -10.21 5.33 -109.22 -0.58 -10.80 16 5 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 6 C 0.44 10.25 7.82 -10.99 -0.09 10.16 16 7 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 8 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 9 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 13 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 C -0.03 -0.39 4.95 -104.63 -0.52 -0.91 16 18 C -0.10 -1.23 9.32 -39.58 -0.37 -1.60 16 19 C -0.09 -0.96 10.04 -39.60 -0.40 -1.36 16 20 C -0.16 -1.71 10.03 -39.52 -0.40 -2.11 16 21 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 22 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 23 C -0.15 -1.75 9.65 -39.51 -0.38 -2.13 16 24 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 27 H 0.35 5.51 7.52 -39.29 -0.30 5.21 16 28 H 0.05 0.68 7.44 -51.93 -0.39 0.30 16 29 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 30 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.13 1.53 7.24 -52.48 -0.38 1.15 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.32 8.04 -52.49 -0.42 0.90 16 LS Contribution 308.93 15.07 4.66 4.66 Total: -1.00 -30.91 308.93 -6.93 -37.84 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.21 Total: 12.07 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.56 Total: -4.53 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.08 Total: -48.71 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.91 -6.93 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049529946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.062 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds