Wall clock time and date at job start Mon Mar 30 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47309 * 2 1 4 4 N 1.46906 * 109.47012 * 240.00398 * 2 1 3 5 5 C 1.46895 * 111.00198 * 84.99945 * 4 2 1 6 6 C 1.50704 * 109.47018 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99912 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99726 * 179.97438 * 6 5 4 9 9 C 1.37098 * 119.99944 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00043 * 359.97438 * 9 8 6 11 11 C 1.38956 * 120.00118 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99988 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00038 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47071 * 59.99554 * 13 11 9 15 15 H 1.48497 * 109.47139 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47245 * 299.99747 * 13 11 9 17 17 C 1.50699 * 109.47417 * 120.00533 * 2 1 3 18 18 C 1.38264 * 119.99175 * 80.01725 * 17 2 1 19 19 C 1.38224 * 120.05371 * 180.02562 * 18 17 2 20 20 C 1.38215 * 120.02235 * 359.97438 * 19 18 17 21 21 C 1.38437 * 119.97975 * 359.70450 * 20 19 18 22 22 F 1.35099 * 120.02745 * 180.31857 * 21 20 19 23 23 C 1.38183 * 119.98467 * 260.00152 * 17 2 1 24 24 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46845 * 299.99941 * 1 2 3 26 26 H 1.08998 * 109.47096 * 59.99651 * 1 2 3 27 27 H 1.00905 * 110.99589 * 321.04130 * 4 2 1 28 28 H 1.09002 * 109.47154 * 300.00074 * 5 4 2 29 29 H 1.09003 * 109.47077 * 59.99864 * 5 4 2 30 30 H 0.97001 * 120.00232 * 0.02562 * 8 6 5 31 31 H 0.97000 * 120.00248 * 180.02562 * 12 11 9 32 32 H 1.08004 * 119.96758 * 359.97438 * 18 17 2 33 33 H 1.08000 * 119.98735 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.00869 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01017 * 359.97438 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5873 -0.5218 -3.5561 7 8 2.8677 -1.6987 -3.4703 8 7 2.7272 0.1203 -4.7328 9 6 3.1870 -0.5567 -5.8327 10 1 3.4374 -1.6045 -5.7561 11 6 3.3318 0.1054 -7.0457 12 7 3.0275 1.3804 -7.1388 13 14 3.9575 -0.8173 -8.5445 14 1 3.0355 -1.9391 -8.8558 15 1 4.0204 0.1076 -9.7046 16 1 5.3136 -1.3541 -8.2649 17 6 2.0324 -0.7105 1.2304 18 6 2.0671 -2.0923 1.2648 19 6 2.5272 -2.7453 2.3928 20 6 2.9536 -2.0174 3.4877 21 6 2.9256 -0.6338 3.4520 22 9 3.3483 0.0788 4.5191 23 6 2.4586 0.0193 2.3236 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.4495 -1.4979 -1.4101 28 1 1.0871 0.6164 -2.5525 29 1 2.7589 1.0463 -2.1182 30 1 2.5033 1.0616 -4.8013 31 1 3.1282 1.8425 -7.9857 32 1 1.7337 -2.6618 0.4098 33 1 2.5542 -3.8246 2.4184 34 1 3.3135 -2.5278 4.3688 35 1 2.4320 1.0986 2.2963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049529946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:46 Heat of formation + Delta-G solvation = -81.200313 kcal Electronic energy + Delta-G solvation = -19109.392092 eV Core-core repulsion = 15827.592565 eV Total energy + Delta-G solvation = -3281.799527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.86231 -40.54655 -39.91099 -37.32381 -35.89922 -33.32150 -32.76497 -31.43044 -30.03493 -27.96936 -25.93977 -24.48196 -23.62366 -21.57864 -21.11299 -19.92180 -18.51680 -17.53211 -17.36377 -17.03017 -16.73926 -16.55972 -16.35399 -15.94729 -15.48953 -15.26078 -14.82303 -14.53698 -14.28048 -13.99952 -13.79639 -13.50384 -13.25985 -12.99747 -12.92201 -12.77123 -12.51442 -12.42216 -12.23563 -12.11789 -11.73434 -11.49086 -10.34794 -10.00728 -9.90163 -9.57979 -9.30895 -8.45824 -5.94498 0.25395 0.30290 1.40559 1.42521 1.53301 2.06752 2.29579 2.63040 2.92792 3.21603 3.30555 3.57694 3.74667 3.91211 4.16007 4.17832 4.26235 4.33462 4.38079 4.46433 4.52547 4.61798 4.73024 4.88845 5.00813 5.14663 5.18928 5.25032 5.41484 5.44689 5.54263 5.91623 5.99616 6.12269 6.39542 6.61151 7.13493 7.57548 8.12796 8.71337 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038067 B = 0.003314 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.371473 B = 8447.711340 C = 8626.154119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.122 3.878 3 H 0.098 0.902 4 N -0.674 5.674 5 C 0.066 3.934 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.079 0.921 11 C -0.012 4.012 12 N -0.921 5.921 13 Si 0.992 3.008 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.273 1.273 17 C -0.044 4.044 18 C -0.118 4.118 19 C -0.092 4.092 20 C -0.161 4.161 21 C 0.077 3.923 22 F -0.150 7.150 23 C -0.156 4.156 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.347 0.653 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.397 0.603 31 H 0.278 0.722 32 H 0.128 0.872 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 -0.840 18.027 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.116 0.884 4 N -0.306 5.306 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.465 4.465 10 H 0.097 0.903 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.198 1.198 17 C -0.044 4.044 18 C -0.136 4.136 19 C -0.110 4.110 20 C -0.180 4.180 21 C 0.058 3.942 22 F -0.128 7.128 23 C -0.175 4.175 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.167 0.833 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.230 0.770 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.313 -1.364 18.106 18.663 hybrid contribution -0.515 0.391 -0.934 1.136 sum -4.829 -0.973 17.172 17.865 Atomic orbital electron populations 1.22443 0.94488 1.02964 1.03282 1.20534 0.93984 0.97465 0.86776 0.88435 1.60137 1.58607 1.09209 1.02686 1.21558 1.01349 0.95275 0.88454 1.20883 0.83436 0.88032 0.85135 1.90490 1.56622 1.18339 1.85455 1.41920 1.58327 1.12612 1.08169 1.19640 1.42253 0.96010 0.88564 0.90302 1.26026 0.97206 0.96601 1.01372 1.69662 1.48593 1.09693 1.28194 0.85003 0.78727 0.77863 0.76844 1.19608 1.19531 1.19798 1.19687 0.96871 0.93939 0.93946 1.21222 0.99765 0.94197 0.98448 1.21289 0.96546 1.01409 0.91762 1.21368 1.03428 0.91775 1.01396 1.17849 1.01262 0.90345 0.84750 1.91466 1.88032 1.78747 1.54590 1.21090 1.02320 1.01482 0.92586 0.92053 0.90409 0.91749 0.83314 0.91072 0.87878 0.76956 0.91299 0.85428 0.82839 0.83144 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.14 71.98 0.66 -2.49 16 2 C 0.12 2.72 2.79 44.17 0.12 2.84 16 3 H 0.10 2.00 7.66 -2.39 -0.02 1.98 16 4 N -0.67 -20.18 5.33 -499.45 -2.66 -22.84 16 5 C 0.07 2.16 5.97 85.56 0.51 2.67 16 6 C 0.44 20.46 7.82 87.66 0.69 21.15 16 7 O -0.62 -34.03 15.78 -3.07 -0.05 -34.07 16 8 N -0.57 -29.10 5.29 -306.98 -1.62 -30.72 16 9 C -0.34 -18.96 9.68 84.04 0.81 -18.14 16 10 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 11 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 12 N -0.92 -49.45 13.05 21.67 0.28 -49.17 16 13 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 17 C -0.04 -0.99 4.95 -19.87 -0.10 -1.09 16 18 C -0.12 -2.66 9.32 22.27 0.21 -2.45 16 19 C -0.09 -1.77 10.04 22.26 0.22 -1.55 16 20 C -0.16 -3.12 10.03 22.31 0.22 -2.90 16 21 C 0.08 1.71 7.30 22.38 0.16 1.88 16 22 F -0.15 -3.49 17.27 44.97 0.78 -2.71 16 23 C -0.16 -3.38 9.65 22.31 0.22 -3.16 16 24 H 0.06 1.12 8.13 -2.38 -0.02 1.10 16 25 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.06 1.17 7.45 -2.39 -0.02 1.15 16 27 H 0.35 10.76 7.52 -89.69 -0.67 10.08 16 28 H 0.07 1.99 7.44 -2.39 -0.02 1.98 16 29 H 0.10 3.08 8.06 -2.39 -0.02 3.06 16 30 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 31 H 0.28 14.00 8.31 -92.71 -0.77 13.22 16 32 H 0.13 2.92 7.24 -2.91 -0.02 2.90 16 33 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.14 2.64 8.04 -2.91 -0.02 2.62 16 Total: -1.00 -66.21 308.93 2.67 -63.55 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.28 Total: 34.64 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 4.19 Total: -3.45 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.00 Total: -102.73 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.07 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -66.21 2.67 -63.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049529946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.654 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds