Wall clock time and date at job start Mon Mar 30 2020 05:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 N 1.46910 * 109.47081 * 119.99147 * 2 1 3 5 5 C 1.46900 * 111.00048 * 275.00153 * 4 2 1 6 6 C 1.50694 * 109.47022 * 179.97438 * 5 4 2 7 7 O 1.21303 * 120.00274 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00365 * 180.02562 * 6 5 4 9 9 C 1.37090 * 120.00068 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00490 * 359.97438 * 9 8 6 11 11 C 1.38950 * 119.99871 * 180.02562 * 9 8 6 12 12 N 1.31411 * 120.00207 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99944 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46565 * 90.00307 * 13 11 9 15 15 H 1.48500 * 109.47275 * 210.00399 * 13 11 9 16 16 H 1.48502 * 109.47182 * 330.00637 * 13 11 9 17 17 C 1.50696 * 109.47545 * 239.99485 * 2 1 3 18 18 C 1.38265 * 119.99038 * 99.99812 * 17 2 1 19 19 C 1.38217 * 120.05343 * 179.72464 * 18 17 2 20 20 C 1.38216 * 120.02581 * 0.02562 * 19 18 17 21 21 C 1.38443 * 119.97557 * 359.97438 * 20 19 18 22 22 F 1.35099 * 120.02540 * 180.02562 * 21 20 19 23 23 C 1.38181 * 119.98309 * 279.72741 * 17 2 1 24 24 H 1.09002 * 109.47254 * 300.00655 * 1 2 3 25 25 H 1.08994 * 109.46795 * 60.00670 * 1 2 3 26 26 H 1.09003 * 109.46713 * 180.02562 * 1 2 3 27 27 H 1.00896 * 110.99798 * 38.95532 * 4 2 1 28 28 H 1.08998 * 109.46989 * 299.99842 * 5 4 2 29 29 H 1.08997 * 109.46794 * 60.00007 * 5 4 2 30 30 H 0.97001 * 119.99321 * 359.97438 * 8 6 5 31 31 H 0.96997 * 119.99751 * 180.02562 * 12 11 9 32 32 H 1.07997 * 119.96984 * 359.74582 * 18 17 2 33 33 H 1.08000 * 119.99075 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.01835 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.01438 * 0.29295 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0824 0.2229 2.3469 6 6 2.5873 -0.5214 3.5561 7 8 2.8677 -1.6984 3.4705 8 7 2.7272 0.1208 4.7329 9 6 3.1870 -0.5562 5.8327 10 1 3.4367 -1.6042 5.7565 11 6 3.3307 0.1057 7.0460 12 7 3.7719 -0.5431 8.1002 13 14 2.8982 1.9181 7.1781 14 1 1.4684 2.0596 7.5538 15 1 3.7481 2.5556 8.2157 16 1 3.1340 2.5800 5.8698 17 6 2.0324 -0.7105 -1.2303 18 6 2.4589 0.0196 -2.3243 19 6 2.9253 -0.6306 -3.4513 20 6 2.9654 -2.0117 -3.4861 21 6 2.5387 -2.7439 -2.3913 22 9 2.5779 -4.0939 -2.4240 23 6 2.0720 -2.0913 -1.2626 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.4496 -1.4977 1.4103 28 1 2.7588 1.0464 2.1182 29 1 1.0870 0.6166 2.5525 30 1 2.5033 1.0621 4.8012 31 1 3.8719 -0.0811 8.9471 32 1 2.4278 1.0988 -2.2980 33 1 3.2585 -0.0593 -4.3051 34 1 3.3303 -2.5197 -4.3666 35 1 1.7385 -2.6615 -0.4081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049529947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:51 Heat of formation + Delta-G solvation = -77.315530 kcal Electronic energy + Delta-G solvation = -19233.094506 eV Core-core repulsion = 15951.463436 eV Total energy + Delta-G solvation = -3281.631070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -49.87039 -40.59273 -40.00742 -37.35469 -35.96092 -33.77075 -32.76737 -31.46332 -30.07244 -28.09929 -25.77262 -24.58652 -23.37031 -21.62422 -21.30216 -20.32770 -18.53962 -17.67907 -17.18120 -17.00231 -16.92038 -16.58482 -16.46697 -15.82049 -15.42206 -15.04884 -14.86649 -14.55592 -14.49006 -14.16774 -14.01947 -13.71994 -13.28625 -12.99223 -12.92967 -12.73450 -12.64447 -12.41206 -12.09536 -11.97890 -11.77079 -11.51000 -10.45509 -10.25119 -9.84846 -9.61185 -9.30210 -8.41199 -6.02601 0.24903 0.34225 1.30959 1.36614 1.45918 1.96231 2.23889 2.60306 2.81220 3.15378 3.32880 3.41385 3.75884 3.89252 4.13552 4.14952 4.26280 4.33213 4.38883 4.44530 4.54169 4.58650 4.79171 4.86983 5.03278 5.16688 5.24366 5.25039 5.40699 5.51829 5.58813 5.91575 6.00657 6.09747 6.33068 6.59965 6.88255 7.39843 7.97253 8.76692 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032377 B = 0.003744 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.607122 B = 7476.500296 C = 7948.273191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 H 0.114 0.886 4 N -0.684 5.684 5 C 0.064 3.936 6 C 0.446 3.554 7 O -0.618 6.618 8 N -0.589 5.589 9 C -0.331 4.331 10 H 0.052 0.948 11 C -0.016 4.016 12 N -0.936 5.936 13 Si 0.968 3.032 14 H -0.256 1.256 15 H -0.276 1.276 16 H -0.228 1.228 17 C -0.045 4.045 18 C -0.122 4.122 19 C -0.087 4.087 20 C -0.163 4.163 21 C 0.066 3.934 22 F -0.157 7.157 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.343 0.657 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.391 0.609 31 H 0.279 0.721 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.149 0.851 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 10.114 -23.609 26.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.013 3.987 3 H 0.132 0.868 4 N -0.316 5.316 5 C -0.068 4.068 6 C 0.234 3.766 7 O -0.502 6.502 8 N -0.231 5.231 9 C -0.460 4.460 10 H 0.070 0.930 11 C -0.215 4.215 12 N -0.577 5.577 13 Si 0.787 3.213 14 H -0.180 1.180 15 H -0.201 1.201 16 H -0.152 1.152 17 C -0.046 4.046 18 C -0.141 4.141 19 C -0.104 4.104 20 C -0.182 4.182 21 C 0.047 3.953 22 F -0.136 7.136 23 C -0.170 4.170 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.162 0.838 28 H 0.136 0.864 29 H 0.101 0.899 30 H 0.227 0.773 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.184 0.816 34 H 0.166 0.834 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.381 9.341 -23.602 26.173 hybrid contribution -0.797 -0.255 1.202 1.465 sum -7.178 9.086 -22.399 25.216 Atomic orbital electron populations 1.22460 0.94699 1.02435 1.03726 1.20624 0.93858 0.97894 0.86293 0.86797 1.60160 1.58879 1.09328 1.03210 1.21670 1.02151 0.95288 0.87717 1.21080 0.82505 0.87960 0.85032 1.90558 1.55414 1.18950 1.85295 1.42008 1.60580 1.11830 1.08717 1.19004 1.42630 0.96008 0.88369 0.92979 1.26166 0.96310 1.05235 0.93772 1.69813 1.46272 1.39757 1.01816 0.85332 0.79408 0.76201 0.80349 1.18038 1.20116 1.15156 1.19797 0.97079 0.92008 0.95726 1.21433 0.98606 1.01671 0.92358 1.21361 0.97128 0.92776 0.99183 1.21409 1.03028 0.95753 0.97987 1.18087 1.03691 0.76525 0.96991 1.91449 1.94683 1.30445 1.97055 1.20997 1.03045 0.96036 0.96953 0.91317 0.89826 0.93240 0.83794 0.86410 0.89914 0.77335 0.91136 0.82346 0.81638 0.83353 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.14 71.98 0.66 -2.14 16 2 C 0.12 2.39 2.79 44.17 0.12 2.51 16 3 H 0.11 1.71 7.66 -2.39 -0.02 1.69 16 4 N -0.68 -19.68 5.32 -499.46 -2.66 -22.33 16 5 C 0.06 1.85 5.97 85.56 0.51 2.36 16 6 C 0.45 20.08 7.82 87.65 0.69 20.76 16 7 O -0.62 -34.82 15.78 -3.10 -0.05 -34.87 16 8 N -0.59 -27.64 5.09 -306.98 -1.56 -29.20 16 9 C -0.33 -19.53 10.16 84.04 0.85 -18.68 16 10 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 11 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 12 N -0.94 -56.82 13.96 21.66 0.30 -56.51 16 13 Si 0.97 38.36 27.74 68.60 1.90 40.26 16 14 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 15 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 17 C -0.05 -0.95 4.96 -19.87 -0.10 -1.05 16 18 C -0.12 -1.89 9.67 22.27 0.22 -1.67 16 19 C -0.09 -1.24 10.04 22.26 0.22 -1.02 16 20 C -0.16 -3.08 10.03 22.31 0.22 -2.86 16 21 C 0.07 1.69 7.30 22.38 0.16 1.85 16 22 F -0.16 -4.54 17.27 44.97 0.78 -3.77 16 23 C -0.15 -3.96 9.30 22.31 0.21 -3.75 16 24 H 0.07 1.03 7.45 -2.39 -0.02 1.01 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 27 H 0.34 10.90 7.52 -89.70 -0.67 10.23 16 28 H 0.12 2.80 8.05 -2.39 -0.02 2.78 16 29 H 0.08 1.86 7.44 -2.39 -0.02 1.85 16 30 H 0.39 14.89 5.76 -92.71 -0.53 14.35 16 31 H 0.28 15.45 8.31 -92.71 -0.77 14.67 16 32 H 0.16 1.43 8.04 -2.91 -0.02 1.40 16 33 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.12 3.39 7.24 -2.91 -0.02 3.37 16 Total: -1.00 -79.05 305.80 2.80 -76.25 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.14 Total: 34.30 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 4.23 Total: -4.13 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -3.92 Total: -108.05 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.05 Total: -34.87 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.78 Total: -3.77 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.26 kcal Total: -79.05 2.80 -76.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049529947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.065 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds