Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46899 * 109.46891 * 2 1 4 4 C 1.46902 * 111.00100 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.38335 * 119.96429 * 269.72583 * 5 4 3 7 7 C 1.38293 * 120.14378 * 179.72632 * 6 5 4 8 8 C 1.38111 * 120.06924 * 0.54871 * 7 6 5 9 9 N 1.48013 * 120.03447 * 179.70652 * 8 7 6 10 10 O 1.31703 * 119.99880 * 0.02562 * 9 8 7 11 11 O 1.31701 * 119.99771 * 180.02562 * 9 8 7 12 12 C 1.38890 * 119.92841 * 359.72264 * 8 7 6 13 13 O 1.35724 * 120.06997 * 180.02562 * 12 8 7 14 14 C 1.22311 * 116.99953 * 174.25685 * 13 12 8 15 15 H 1.08001 * 120.00020 * 5.09702 * 14 13 12 16 16 C 1.46629 * 120.00206 * 185.09661 * 14 13 12 17 17 N 1.29367 * 119.99912 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00262 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46682 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46540 * 120.00201 * 18 16 14 21 21 H 1.48494 * 109.47106 * 240.00217 * 18 16 14 22 22 C 1.38073 * 119.96530 * 90.00143 * 5 4 3 23 23 H 1.08994 * 109.46449 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46828 * 299.99727 * 1 2 3 25 25 H 1.09001 * 109.47183 * 59.99972 * 1 2 3 26 26 H 1.08995 * 109.47201 * 240.00574 * 2 1 3 27 27 H 1.09001 * 109.47183 * 120.00028 * 2 1 3 28 28 H 1.00899 * 111.00191 * 303.95748 * 3 2 1 29 29 H 1.09002 * 109.46953 * 300.00294 * 4 3 2 30 30 H 1.08998 * 109.47110 * 60.00268 * 4 3 2 31 31 H 1.07997 * 119.92584 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.96411 * 180.27795 * 7 6 5 33 33 H 0.97000 * 120.00003 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.03395 * 359.97377 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 -0.0006 5 6 3.9524 2.8580 0.0000 6 6 4.1701 3.5143 -1.1981 7 6 4.5907 4.8317 -1.2019 8 6 4.8055 5.4929 -0.0085 9 7 5.2619 6.9009 -0.0134 10 8 5.4628 7.5240 -1.1562 11 8 5.4670 7.5306 1.1249 12 6 4.5932 4.8351 1.1962 13 8 4.8030 5.4823 2.3706 14 6 4.4965 4.8879 3.3946 15 1 4.1571 3.8639 3.3436 16 6 4.5898 5.5655 4.6916 17 7 4.9959 6.7922 4.7527 18 14 4.1210 4.6578 6.2556 19 1 3.6916 3.2773 5.9168 20 1 5.2931 4.6020 7.1656 21 1 3.0062 5.3726 6.9275 22 6 4.1653 3.5134 1.1965 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6441 1.9013 -0.7813 29 1 3.8655 0.9201 0.8891 30 1 3.8647 0.9205 -0.8908 31 1 4.0067 2.9981 -2.1326 32 1 4.7555 5.3426 -2.1389 33 1 5.0572 7.2406 5.6107 34 1 3.9990 2.9992 2.1316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050516991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = 39.027296 kcal Electronic energy + Delta-G solvation = -19846.296734 eV Core-core repulsion = 16557.337878 eV Total energy + Delta-G solvation = -3288.958856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.08821 -38.25139 -36.88008 -35.78536 -33.77258 -32.36829 -31.92625 -29.67507 -29.32344 -26.23882 -25.90474 -23.17353 -22.14240 -22.00138 -20.80820 -19.09333 -17.88955 -16.58003 -16.20940 -15.86704 -15.32938 -15.18977 -14.96948 -14.90854 -14.36074 -13.89650 -13.68894 -13.62649 -13.22333 -12.81567 -12.39801 -12.30124 -11.76710 -11.65342 -11.32340 -11.18313 -11.13589 -11.02140 -10.83592 -10.11012 -9.81585 -9.42932 -9.15280 -8.97519 -8.50953 -8.32172 -7.89864 -7.70300 -4.31183 0.72774 2.04176 2.42614 2.55337 2.67383 2.69707 3.08638 3.22375 3.81552 4.18173 4.37144 4.59914 4.95313 5.10684 5.21231 5.31420 5.40046 5.50071 5.66144 5.75200 5.77734 5.88229 5.94789 6.06622 6.10154 6.28360 6.50324 6.54838 6.84764 6.95767 7.02649 7.13084 7.34647 7.41827 7.52023 7.86392 8.76722 8.94976 9.38478 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.007454 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.856289 B = 3755.616203 C = 5828.331513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.684 5.684 4 C 0.104 3.896 5 C -0.035 4.035 6 C -0.220 4.220 7 C -0.004 4.004 8 C -0.080 4.080 9 N 0.030 4.970 10 O -0.362 6.362 11 O -0.267 6.267 12 C 0.042 3.958 13 O -0.009 6.009 14 C -0.307 4.307 15 H 0.117 0.883 16 C 0.035 3.965 17 N -0.706 5.706 18 Si 0.962 3.038 19 H -0.248 1.248 20 H -0.260 1.260 21 H -0.259 1.259 22 C -0.166 4.166 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.344 0.656 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.308 0.692 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 -14.127 0.422 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.316 5.316 4 C -0.025 4.025 5 C -0.036 4.036 6 C -0.242 4.242 7 C -0.023 4.023 8 C -0.183 4.183 9 N 0.441 4.559 10 O -0.501 6.501 11 O -0.427 6.427 12 C -0.022 4.022 13 O 0.110 5.890 14 C -0.390 4.390 15 H 0.134 0.866 16 C -0.193 4.193 17 N -0.329 5.329 18 Si 0.781 3.219 19 H -0.171 1.171 20 H -0.184 1.184 21 H -0.183 1.183 22 C -0.186 4.186 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.981 -13.735 1.160 15.026 hybrid contribution 0.194 -0.193 -0.324 0.424 sum -5.787 -13.928 0.836 15.106 Atomic orbital electron populations 1.21768 0.95065 1.01419 1.02572 1.21929 0.95647 0.89768 1.00266 1.60526 1.07544 1.13004 1.50558 1.20821 0.87511 0.93321 1.00803 1.19266 0.97314 0.94395 0.92652 1.20189 1.12670 0.94456 0.96862 1.20383 0.92668 0.93714 0.95551 1.18813 1.24777 0.81524 0.93178 1.49604 1.01389 1.03155 1.01794 1.96049 1.67895 1.70307 1.15888 1.96226 1.62112 1.69286 1.15054 1.18312 1.08131 0.92608 0.83122 1.80540 1.54037 1.42302 1.12137 1.22329 1.33636 0.98915 0.84107 0.86632 1.27717 0.95910 0.95805 0.99841 1.69007 1.22719 1.10360 1.30804 0.85293 0.79737 0.80175 0.76717 1.17058 1.18388 1.18310 1.20480 1.06688 0.93066 0.98386 0.92420 0.91695 0.92864 0.95633 0.91114 0.83820 0.90448 0.94515 0.86720 0.85105 0.87878 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.17 37.16 0.38 -0.95 16 2 C 0.05 0.53 6.41 -3.82 -0.02 0.51 16 3 N -0.68 -8.61 6.49 -115.05 -0.75 -9.36 16 4 C 0.10 1.38 5.81 -4.98 -0.03 1.35 16 5 C -0.03 -0.59 5.39 -104.65 -0.56 -1.16 16 6 C -0.22 -3.84 9.70 -39.53 -0.38 -4.23 16 7 C 0.00 -0.08 9.57 -39.61 -0.38 -0.46 16 8 C -0.08 -2.01 6.90 -79.75 -0.55 -2.56 16 9 N 0.03 0.89 4.98 34.06 0.17 1.06 16 10 O -0.36 -10.63 19.15 -31.57 -0.60 -11.24 16 11 O -0.27 -8.42 17.90 -39.21 -0.70 -9.12 16 12 C 0.04 1.01 6.58 -39.08 -0.26 0.75 16 13 O -0.01 -0.24 7.21 -1.13 -0.01 -0.24 16 14 C -0.31 -7.02 9.48 34.12 0.32 -6.70 16 15 H 0.12 2.31 5.03 -52.49 -0.26 2.05 16 16 C 0.03 0.74 5.69 -15.21 -0.09 0.66 16 17 N -0.71 -16.47 13.66 55.99 0.76 -15.70 16 18 Si 0.96 14.91 29.64 -169.99 -5.04 9.87 16 19 H -0.25 -3.65 7.11 56.52 0.40 -3.25 16 20 H -0.26 -3.90 7.11 56.52 0.40 -3.49 16 21 H -0.26 -3.93 7.11 56.52 0.40 -3.53 16 22 C -0.17 -3.30 8.77 -39.39 -0.35 -3.64 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.34 4.21 8.72 -39.29 -0.34 3.86 16 29 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.13 2.62 7.58 -52.49 -0.40 2.22 16 33 H 0.31 6.09 8.26 -40.82 -0.34 5.76 16 34 H 0.13 2.43 5.69 -52.49 -0.30 2.13 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -31.39 305.04 -7.30 -38.69 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.81 Total: 7.88 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.92 Total: -16.43 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.19 Total: -24.00 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.31 Total: -20.60 kcal Atomic # 14 Polarization: 14.91 SS G_CDS: -5.04 Total: 9.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.39 -7.30 -38.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050516991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.715 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds