Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46899 * 109.46891 * 2 1 4 4 C 1.46902 * 111.00100 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.38335 * 119.96429 * 269.72583 * 5 4 3 7 7 C 1.38293 * 120.14378 * 179.72632 * 6 5 4 8 8 C 1.38111 * 120.06924 * 0.54871 * 7 6 5 9 9 N 1.48013 * 120.03447 * 179.70652 * 8 7 6 10 10 O 1.31703 * 119.99880 * 0.02562 * 9 8 7 11 11 O 1.31701 * 119.99771 * 180.02562 * 9 8 7 12 12 C 1.38890 * 119.92841 * 359.72264 * 8 7 6 13 13 O 1.35724 * 120.06997 * 180.02562 * 12 8 7 14 14 C 1.22311 * 116.99953 * 174.25685 * 13 12 8 15 15 H 1.08001 * 120.00020 * 5.09702 * 14 13 12 16 16 C 1.46629 * 120.00206 * 185.09661 * 14 13 12 17 17 N 1.29367 * 119.99912 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00262 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46682 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46540 * 120.00201 * 18 16 14 21 21 H 1.48494 * 109.47106 * 240.00217 * 18 16 14 22 22 C 1.38073 * 119.96530 * 90.00143 * 5 4 3 23 23 H 1.08994 * 109.46449 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46828 * 299.99727 * 1 2 3 25 25 H 1.09001 * 109.47183 * 59.99972 * 1 2 3 26 26 H 1.08995 * 109.47201 * 240.00574 * 2 1 3 27 27 H 1.09001 * 109.47183 * 120.00028 * 2 1 3 28 28 H 1.00899 * 111.00191 * 303.95748 * 3 2 1 29 29 H 1.09002 * 109.46953 * 300.00294 * 4 3 2 30 30 H 1.08998 * 109.47110 * 60.00268 * 4 3 2 31 31 H 1.07997 * 119.92584 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.96411 * 180.27795 * 7 6 5 33 33 H 0.97000 * 120.00003 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.03395 * 359.97377 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 -0.0006 5 6 3.9524 2.8580 0.0000 6 6 4.1701 3.5143 -1.1981 7 6 4.5907 4.8317 -1.2019 8 6 4.8055 5.4929 -0.0085 9 7 5.2619 6.9009 -0.0134 10 8 5.4628 7.5240 -1.1562 11 8 5.4670 7.5306 1.1249 12 6 4.5932 4.8351 1.1962 13 8 4.8030 5.4823 2.3706 14 6 4.4965 4.8879 3.3946 15 1 4.1571 3.8639 3.3436 16 6 4.5898 5.5655 4.6916 17 7 4.9959 6.7922 4.7527 18 14 4.1210 4.6578 6.2556 19 1 3.6916 3.2773 5.9168 20 1 5.2931 4.6020 7.1656 21 1 3.0062 5.3726 6.9275 22 6 4.1653 3.5134 1.1965 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6441 1.9013 -0.7813 29 1 3.8655 0.9201 0.8891 30 1 3.8647 0.9205 -0.8908 31 1 4.0067 2.9981 -2.1326 32 1 4.7555 5.3426 -2.1389 33 1 5.0572 7.2406 5.6107 34 1 3.9990 2.9992 2.1316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050516991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = 15.464764 kcal Electronic energy + Delta-G solvation = -19847.318482 eV Core-core repulsion = 16557.337878 eV Total energy + Delta-G solvation = -3289.980604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.49350 -39.78160 -37.99178 -36.84324 -36.02029 -33.71549 -33.07102 -31.35930 -30.44943 -28.40999 -27.17110 -24.44237 -23.87493 -22.80190 -22.53112 -21.07433 -19.57230 -18.06775 -17.89711 -17.54010 -17.04115 -16.74240 -16.59608 -15.83848 -15.44562 -15.39200 -15.35640 -15.04688 -14.33490 -14.24714 -13.58296 -13.41104 -13.09454 -12.75985 -12.66491 -12.39863 -12.27375 -12.03950 -11.87545 -11.77282 -11.55169 -10.90673 -10.77944 -10.68402 -9.96168 -9.79646 -9.64379 -9.20628 -6.25417 -1.20563 0.47779 0.83499 1.08698 1.39503 1.59747 1.76907 1.91068 2.06853 2.32067 2.75441 3.51895 3.54078 3.92314 3.99968 4.19346 4.33258 4.39085 4.43617 4.51896 4.66602 4.72805 4.75805 4.84232 5.01984 5.08970 5.12307 5.23568 5.28613 5.43200 5.46728 5.67853 6.00001 6.21963 6.47220 6.55016 6.79658 7.24714 7.42693 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.007454 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.856289 B = 3755.616203 C = 5828.331513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.698 5.698 4 C 0.117 3.883 5 C -0.077 4.077 6 C -0.121 4.121 7 C -0.088 4.088 8 C -0.024 4.024 9 N -0.006 5.006 10 O -0.555 6.555 11 O -0.492 6.492 12 C -0.081 4.081 13 O -0.020 6.020 14 C -0.138 4.138 15 H 0.185 0.815 16 C -0.026 4.026 17 N -0.691 5.691 18 Si 1.055 2.945 19 H -0.206 1.206 20 H -0.243 1.243 21 H -0.247 1.247 22 C -0.112 4.112 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.343 0.657 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.157 0.843 32 H 0.113 0.887 33 H 0.343 0.657 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.175 -22.642 8.439 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.331 5.331 4 C -0.011 4.011 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.108 4.108 8 C -0.144 4.144 9 N 0.325 4.675 10 O -0.646 6.646 11 O -0.592 6.592 12 C -0.139 4.139 13 O 0.107 5.893 14 C -0.233 4.233 15 H 0.201 0.799 16 C -0.255 4.255 17 N -0.317 5.317 18 Si 0.862 3.138 19 H -0.127 1.127 20 H -0.166 1.166 21 H -0.170 1.170 22 C -0.132 4.132 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.161 0.839 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.175 0.825 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.893 -21.678 8.915 25.070 hybrid contribution 0.739 1.388 -0.957 1.841 sum -8.154 -20.290 7.958 23.270 Atomic orbital electron populations 1.21756 0.94638 1.02257 1.01991 1.21981 0.95968 0.88495 1.01043 1.60566 1.07160 1.14507 1.50831 1.20731 0.87912 0.89861 1.02631 1.19542 1.00399 0.96938 0.91037 1.20878 1.02460 0.91639 0.99432 1.20432 1.00111 0.95973 0.94235 1.19563 1.18866 0.80832 0.95172 1.48904 1.14606 1.04267 0.99767 1.95796 1.78844 1.72764 1.17147 1.95913 1.74706 1.72044 1.16586 1.18626 1.19466 0.95133 0.80682 1.80729 1.49114 1.44726 1.14728 1.25366 1.12992 1.00635 0.84343 0.79856 1.30301 0.95251 0.96901 1.03037 1.69056 1.15023 1.12242 1.35342 0.84147 0.80296 0.80168 0.69212 1.12704 1.16647 1.16993 1.20744 1.01741 0.89826 1.00852 0.90914 0.92688 0.93055 0.94632 0.90439 0.83934 0.88765 0.92645 0.82522 0.86887 0.84040 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.17 71.99 0.73 -1.23 16 2 C 0.05 0.77 6.41 86.31 0.55 1.32 16 3 N -0.70 -13.44 6.49 -517.92 -3.36 -16.80 16 4 C 0.12 2.32 5.81 85.56 0.50 2.82 16 5 C -0.08 -2.30 5.39 -19.88 -0.11 -2.41 16 6 C -0.12 -4.12 9.70 22.31 0.22 -3.90 16 7 C -0.09 -4.21 9.57 22.25 0.21 -4.00 16 8 C -0.02 -1.38 6.90 36.50 0.25 -1.13 16 9 N -0.01 -0.41 4.98 -46.17 -0.23 -0.64 16 10 O -0.55 -42.86 19.15 3.51 0.07 -42.80 16 11 O -0.49 -38.36 17.90 10.82 0.19 -38.17 16 12 C -0.08 -3.94 6.58 22.59 0.15 -3.79 16 13 O -0.02 -1.00 7.21 73.33 0.53 -0.48 16 14 C -0.14 -5.15 9.48 70.01 0.66 -4.49 16 15 H 0.19 4.82 5.03 -2.91 -0.01 4.80 16 16 C -0.03 -0.87 5.69 87.25 0.50 -0.37 16 17 N -0.69 -28.18 13.66 23.22 0.32 -27.86 16 18 Si 1.05 18.86 29.64 68.60 2.03 20.89 16 19 H -0.21 -2.71 7.11 99.48 0.71 -2.00 16 20 H -0.24 -4.15 7.11 99.48 0.71 -3.44 16 21 H -0.25 -4.36 7.11 99.48 0.71 -3.65 16 22 C -0.11 -3.88 8.77 22.40 0.20 -3.68 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.34 6.76 8.72 -89.69 -0.78 5.98 16 29 H 0.09 1.59 8.08 -2.39 -0.02 1.58 16 30 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 31 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.11 5.63 7.58 -2.91 -0.02 5.61 16 33 H 0.34 11.16 8.26 -92.71 -0.77 10.39 16 34 H 0.17 4.28 5.69 -2.91 -0.02 4.26 16 Total: -1.00 -98.48 305.04 3.77 -94.71 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.36 Total: 32.00 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 3.86 Total: -20.85 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -3.27 Total: -45.30 kcal Atomic # 8 Polarization: -82.23 SS G_CDS: 0.79 Total: -81.44 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: 2.03 Total: 20.89 kcal Total: -98.48 3.77 -94.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050516991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.173 kcal (2) G-P(sol) polarization free energy of solvation -98.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds