Wall clock time and date at job start Mon Mar 30 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34760 * 116.99846 * 2 1 4 4 O 1.21515 * 119.99578 * 359.97438 * 3 2 1 5 5 C 1.47380 * 120.00156 * 180.02562 * 3 2 1 6 6 C 1.36669 * 125.78224 * 179.71422 * 5 3 2 7 7 N 1.34781 * 106.83602 * 179.83849 * 6 5 3 8 8 C 1.46499 * 126.58821 * 180.12900 * 7 6 5 9 9 N 1.46495 * 109.47318 * 95.31453 * 8 7 6 10 10 C 1.36938 * 119.99932 * 90.00261 * 9 8 7 11 11 H 1.08008 * 120.00236 * 217.92782 * 10 9 8 12 12 C 1.38811 * 119.99926 * 37.92355 * 10 9 8 13 13 N 1.31619 * 119.99972 * 20.66796 * 12 10 9 14 14 Si 1.86799 * 120.00041 * 200.67052 * 12 10 9 15 15 H 1.48505 * 109.47439 * 90.00121 * 14 12 10 16 16 H 1.48496 * 109.47103 * 210.00281 * 14 12 10 17 17 H 1.48499 * 109.47084 * 330.00053 * 14 12 10 18 18 C 1.46498 * 120.00315 * 270.00437 * 9 8 7 19 19 C 1.53002 * 117.50118 * 194.10243 * 18 9 8 20 20 C 1.52997 * 60.00086 * 252.51042 * 19 18 9 21 21 N 1.40214 * 106.82946 * 0.41704 * 7 6 5 22 22 N 1.28763 * 108.37981 * 359.73181 * 21 7 6 23 23 H 1.09001 * 109.47384 * 299.99755 * 1 2 3 24 24 H 1.08996 * 109.47200 * 60.00712 * 1 2 3 25 25 H 1.09004 * 109.46650 * 180.02562 * 1 2 3 26 26 H 1.07995 * 126.58103 * 359.96597 * 6 5 3 27 27 H 1.09002 * 109.47161 * 215.31832 * 8 7 6 28 28 H 1.08997 * 109.46591 * 335.31969 * 8 7 6 29 29 H 0.97002 * 120.00224 * 174.96088 * 13 12 10 30 30 H 1.09002 * 115.54805 * 339.81404 * 18 9 8 31 31 H 1.09001 * 117.49747 * 0.02562 * 19 18 9 32 32 H 1.09002 * 117.49631 * 145.01820 * 19 18 9 33 33 H 1.08996 * 117.49854 * 252.51022 * 20 19 18 34 34 H 1.08998 * 117.51871 * 107.48246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4018 2.2198 -0.0005 5 6 3.5355 1.2779 -0.0006 6 6 4.2755 2.4270 -0.0062 7 7 5.5714 2.0568 -0.0009 8 6 6.7342 2.9480 -0.0013 9 7 7.1957 3.1493 1.3744 10 6 8.1300 2.3057 1.9134 11 1 8.0564 2.0094 2.9495 12 6 9.1719 1.8314 1.1283 13 7 9.5120 2.4712 0.0296 14 14 10.0911 0.2849 1.6311 15 1 9.4291 -0.9016 1.0317 16 1 11.4939 0.3646 1.1505 17 1 10.0812 0.1623 3.1110 18 6 6.6576 4.2529 2.1735 19 6 7.3976 4.6187 3.4618 20 6 6.0445 3.9080 3.5323 21 7 5.5931 0.6548 -0.0018 22 7 4.3776 0.2299 -0.0015 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.8948 3.4376 -0.0115 27 1 7.5343 2.5011 -0.5913 28 1 6.4556 3.9083 -0.4352 29 1 10.2855 2.1829 -0.4799 30 1 6.2012 5.0646 1.6070 31 1 8.2850 4.0385 3.7145 32 1 7.4284 5.6714 3.7429 33 1 5.1852 4.4930 3.8598 34 1 6.0412 2.8598 3.8314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050898432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:36 Heat of formation + Delta-G solvation = 63.523245 kcal Electronic energy + Delta-G solvation = -20159.407504 eV Core-core repulsion = 16903.803623 eV Total energy + Delta-G solvation = -3255.603881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.47762 -39.82196 -37.43010 -36.22936 -34.38322 -32.75718 -30.65560 -30.35946 -27.71336 -26.18729 -24.21075 -23.29154 -21.63116 -21.45474 -20.55907 -20.08645 -17.97200 -16.91378 -16.71921 -16.25625 -15.76201 -15.48350 -14.98367 -14.49899 -14.16349 -13.92545 -13.55837 -13.27974 -12.91619 -12.36246 -12.11641 -11.66078 -11.40637 -11.35449 -11.06347 -10.88246 -10.82313 -10.69258 -10.56708 -10.40809 -10.24598 -10.07887 -9.91965 -9.48947 -8.80119 -8.71045 -7.11397 -6.29172 -3.84672 1.59994 2.16836 2.68142 3.12833 3.27255 3.31666 3.36102 3.46059 4.16515 4.64696 4.72572 4.80343 5.02049 5.12702 5.17104 5.19766 5.30672 5.43365 5.53951 5.58241 5.79161 5.84458 6.06899 6.24875 6.26034 6.31244 6.49911 6.69193 6.78907 6.92631 7.22057 7.50799 7.89206 8.03789 8.65049 8.71836 9.28274 9.76780 10.77372 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.005916 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.731271 B = 4731.790815 C = 5450.420957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.343 6.343 3 C 0.563 3.437 4 O -0.520 6.520 5 C -0.119 4.119 6 C 0.089 3.911 7 N -0.331 5.331 8 C 0.333 3.667 9 N -0.521 5.521 10 C -0.280 4.280 11 H 0.070 0.930 12 C 0.035 3.965 13 N -0.885 5.885 14 Si 0.911 3.089 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.105 3.895 19 C -0.180 4.180 20 C -0.219 4.219 21 N -0.046 5.046 22 N -0.214 5.214 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.191 0.809 27 H 0.145 0.855 28 H 0.081 0.919 29 H 0.267 0.733 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 1.734 -0.381 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.407 3.593 4 O -0.408 6.408 5 C -0.257 4.257 6 C -0.073 4.073 7 N -0.122 5.122 8 C 0.128 3.872 9 N -0.235 5.235 10 C -0.409 4.409 11 H 0.088 0.912 12 C -0.168 4.168 13 N -0.524 5.524 14 Si 0.739 3.261 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.002 4.002 19 C -0.219 4.219 20 C -0.259 4.259 21 N -0.028 5.028 22 N -0.089 5.089 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.208 0.792 27 H 0.162 0.838 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.306 0.800 -0.541 9.356 hybrid contribution -0.318 0.355 0.404 0.625 sum -9.624 1.155 -0.138 9.694 Atomic orbital electron populations 1.23253 0.76632 1.03522 1.02344 1.86675 1.22783 1.32251 1.84072 1.19666 0.86649 0.81316 0.71673 1.90821 1.66047 1.36038 1.47898 1.20162 0.91670 0.90551 1.23294 1.23359 0.85775 1.00308 0.97830 1.53862 1.07070 1.07761 1.43486 1.22464 0.84695 0.90533 0.89553 1.43881 1.40974 1.27597 1.11012 1.18975 1.02877 1.22012 0.97073 0.91242 1.25256 0.96055 0.98638 0.96889 1.69751 1.26276 1.38726 1.17665 0.86165 0.78196 0.82969 0.78748 1.19977 1.21310 1.19967 1.21354 1.00409 0.92011 0.86457 1.23072 0.96313 0.99482 1.03006 1.23351 0.96005 1.00955 1.05626 1.82074 1.12059 0.89105 1.19601 1.74756 0.97335 1.26295 1.10513 0.91999 0.92006 0.88182 0.79169 0.83818 0.90088 0.92276 0.88597 0.87865 0.90148 0.90310 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.34 -5.40 10.57 -40.65 -0.43 -5.83 16 3 C 0.56 9.77 7.96 34.45 0.27 10.04 16 4 O -0.52 -9.22 16.65 -19.28 -0.32 -9.54 16 5 C -0.12 -2.25 7.02 -83.57 -0.59 -2.84 16 6 C 0.09 1.56 11.30 -16.82 -0.19 1.37 16 7 N -0.33 -6.64 3.87 -64.25 -0.25 -6.89 16 8 C 0.33 6.80 6.68 -63.76 -0.43 6.37 16 9 N -0.52 -11.41 3.02 -169.35 -0.51 -11.93 16 10 C -0.28 -6.92 8.04 -15.06 -0.12 -7.04 16 11 H 0.07 1.78 7.22 -52.48 -0.38 1.40 16 12 C 0.03 0.87 4.97 -17.43 -0.09 0.78 16 13 N -0.88 -22.56 11.44 55.49 0.64 -21.93 16 14 Si 0.91 20.66 29.60 -169.99 -5.03 15.63 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.11 1.98 6.62 -67.93 -0.45 1.53 16 19 C -0.18 -3.21 9.81 -26.73 -0.26 -3.48 16 20 C -0.22 -3.88 10.08 -26.73 -0.27 -4.15 16 21 N -0.05 -1.04 13.78 60.35 0.83 -0.21 16 22 N -0.21 -4.57 12.39 32.83 0.41 -4.16 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.19 2.63 8.06 -52.49 -0.42 2.21 16 27 H 0.14 3.35 5.51 -51.93 -0.29 3.07 16 28 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 29 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 30 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 31 H 0.10 2.07 6.96 -51.93 -0.36 1.71 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.73 8.00 -51.93 -0.42 1.31 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -28.54 306.59 -5.05 -33.59 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -3.95 Total: 2.60 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.05 Total: 4.05 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 1.11 Total: -45.11 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.75 Total: -15.37 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.54 -5.05 -33.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.114 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds