Wall clock time and date at job start Mon Mar 30 2020 05:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47276 * 2 1 4 4 H 1.08998 * 109.47546 * 54.99912 * 3 2 1 5 5 C 1.50703 * 109.47346 * 175.00150 * 3 2 1 6 6 H 1.07995 * 119.99799 * 119.99387 * 5 3 2 7 7 C 1.37876 * 119.99906 * 299.72368 * 5 3 2 8 8 N 1.31519 * 119.99916 * 0.27671 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 180.27250 * 7 5 3 10 10 H 1.48504 * 109.46860 * 60.00073 * 9 7 5 11 11 H 1.48504 * 109.46930 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47217 * 299.99870 * 9 7 5 13 13 N 1.46508 * 109.46760 * 294.99900 * 3 2 1 14 14 C 1.34774 * 119.99659 * 85.00503 * 13 3 2 15 15 O 1.21602 * 120.00109 * 359.97438 * 14 13 3 16 16 C 1.47436 * 119.99935 * 179.97438 * 14 13 3 17 17 C 1.39756 * 120.19270 * 354.06089 * 16 14 13 18 18 C 1.37931 * 119.89951 * 180.02562 * 17 16 14 19 19 F 1.35098 * 119.85354 * 180.02562 * 18 17 16 20 20 C 1.38784 * 120.29944 * 0.02562 * 18 17 16 21 21 C 1.37964 * 120.40090 * 359.95447 * 20 18 17 22 22 C 1.38923 * 120.08935 * 359.76627 * 21 20 18 23 23 N 1.39000 * 120.15303 * 180.25037 * 22 21 20 24 24 H 1.09010 * 109.46818 * 300.00038 * 1 2 3 25 25 H 1.08998 * 109.47703 * 60.00135 * 1 2 3 26 26 H 1.08997 * 109.47610 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47213 * 239.99606 * 2 1 3 28 28 H 1.09004 * 109.47285 * 119.99865 * 2 1 3 29 29 H 0.96999 * 119.99886 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99984 * 264.99830 * 13 3 2 31 31 H 1.08007 * 120.05272 * 359.97438 * 17 16 14 32 32 H 1.08007 * 119.79890 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.95510 * 180.02562 * 21 20 18 34 34 H 0.96998 * 120.00132 * 185.74974 * 23 22 21 35 35 H 0.97000 * 119.99918 * 5.75623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8888 -0.6524 7 6 4.1431 0.8835 1.2306 8 7 3.4060 0.3421 2.1758 9 14 6.0044 0.8925 1.3877 10 1 6.4946 2.2943 1.3849 11 1 6.3970 0.2339 2.6595 12 1 6.6013 0.1570 0.2441 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4319 16 6 0.0452 3.3240 -2.6266 17 6 0.9753 3.4733 -3.6590 18 6 0.6042 4.0918 -4.8347 19 9 1.5039 4.2351 -5.8323 20 6 -0.6893 4.5676 -4.9975 21 6 -1.6176 4.4265 -3.9866 22 6 -1.2631 3.8010 -2.7979 23 7 -2.1987 3.6534 -1.7806 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8289 -0.0521 2.9546 30 1 2.2719 2.1231 -1.9979 31 1 1.9834 3.1056 -3.5362 32 1 -0.9711 5.0510 -5.9213 33 1 -2.6223 4.7990 -4.1212 34 1 -1.9285 3.2925 -0.9217 35 1 -3.1218 3.9113 -1.9295 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054179897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:20 Heat of formation + Delta-G solvation = -61.249652 kcal Electronic energy + Delta-G solvation = -20146.286809 eV Core-core repulsion = 16865.352407 eV Total energy + Delta-G solvation = -3280.934401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -48.60799 -40.02387 -37.98954 -35.30597 -34.08675 -32.52860 -31.57811 -30.35843 -28.20905 -26.94228 -24.07272 -23.04838 -22.03505 -20.55153 -19.47556 -18.12256 -17.10751 -16.94345 -16.43490 -15.52161 -15.40318 -15.20468 -14.88042 -14.59066 -14.28384 -14.03149 -13.22110 -12.92918 -12.81413 -12.72441 -12.51713 -11.96703 -11.53420 -11.36862 -11.26185 -11.01762 -10.84151 -10.36048 -10.34450 -10.21571 -9.67057 -9.15124 -9.08005 -9.07350 -8.53091 -7.93926 -7.35760 -6.14845 -4.24419 0.95452 1.45646 3.21902 3.25176 3.30322 3.31822 3.97701 4.05699 4.09326 4.34805 4.46491 4.75178 4.86160 5.16770 5.29336 5.37997 5.79643 5.81334 6.08766 6.14385 6.19603 6.35591 6.42212 6.61505 6.83319 7.01307 7.14289 7.27572 7.34974 7.54964 7.61238 7.69586 7.86121 8.04340 8.17300 8.59067 8.73497 9.05178 9.42836 10.90453 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.005525 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.127399 B = 5066.696106 C = 5988.467958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.697 5.697 14 C 0.558 3.442 15 O -0.556 6.556 16 C -0.192 4.192 17 C -0.067 4.067 18 C 0.017 3.983 19 F -0.148 7.148 20 C -0.081 4.081 21 C -0.192 4.192 22 C 0.269 3.731 23 N -0.853 5.853 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.100 0.900 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.421 0.579 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 5.891 -11.270 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.343 5.343 14 C 0.345 3.655 15 O -0.438 6.438 16 C -0.201 4.201 17 C -0.087 4.087 18 C -0.004 4.004 19 F -0.127 7.127 20 C -0.101 4.101 21 C -0.215 4.215 22 C 0.156 3.844 23 N -0.401 5.401 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.223 0.777 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.266 0.734 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.934 5.696 -10.323 14.793 hybrid contribution 1.208 -0.001 -0.293 1.243 sum -7.726 5.695 -10.616 14.312 Atomic orbital electron populations 1.21843 0.98382 0.98107 1.01146 1.21936 0.92620 0.99701 1.02387 1.18847 0.94345 0.89234 0.80732 0.93068 1.21186 0.90636 1.39383 1.06267 0.92100 1.24870 0.98644 0.94707 0.95324 1.69881 1.35268 1.37571 1.09226 0.86509 0.84785 0.78361 0.77473 1.20164 1.21117 1.20116 1.46420 1.14226 1.54955 1.18688 1.17835 0.82905 0.78686 0.86031 1.90348 1.51086 1.61965 1.40388 1.19479 0.93742 1.09937 0.96945 1.21127 0.99940 0.96486 0.91193 1.17183 0.88027 1.08004 0.87186 1.91460 1.66891 1.94697 1.59604 1.20939 0.91459 0.98239 0.99433 1.20425 1.00595 1.07099 0.93354 1.17786 0.88387 0.89707 0.88506 1.43551 1.09520 1.70301 1.16681 0.93121 0.94280 0.95838 0.94962 0.88207 0.92480 0.77702 0.84400 0.84897 0.85002 0.73438 0.78322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.15 0.32 -2.66 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.63 2.24 -69.08 -0.15 6.47 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 8 N -0.88 -24.31 11.30 55.43 0.63 -23.68 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.26 4.97 -56.00 -0.28 -14.54 16 14 C 0.56 10.87 6.31 -12.52 -0.08 10.79 16 15 O -0.56 -11.80 10.77 5.28 0.06 -11.75 16 16 C -0.19 -3.10 5.89 -104.81 -0.62 -3.72 16 17 C -0.07 -0.98 9.49 -39.13 -0.37 -1.35 16 18 C 0.02 0.23 7.28 -39.49 -0.29 -0.06 16 19 F -0.15 -2.04 17.26 2.25 0.04 -2.00 16 20 C -0.08 -0.92 10.00 -39.48 -0.39 -1.31 16 21 C -0.19 -2.16 9.88 -39.43 -0.39 -2.55 16 22 C 0.27 3.77 6.76 -83.58 -0.57 3.21 16 23 N -0.85 -11.12 8.94 32.56 0.29 -10.83 16 24 H 0.05 1.15 7.84 -51.92 -0.41 0.74 16 25 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 2.63 5.96 -51.93 -0.31 2.32 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 7.09 6.60 -40.82 -0.27 6.82 16 31 H 0.14 1.87 6.45 -52.48 -0.34 1.53 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.42 6.57 5.34 -40.95 -0.22 6.36 16 35 H 0.39 3.69 8.84 -40.82 -0.36 3.33 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -28.57 292.66 -6.78 -35.35 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -3.82 Total: 14.52 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.08 Total: -6.90 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.64 Total: -49.05 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.06 Total: -11.75 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.57 -6.78 -35.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.901 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds