Wall clock time and date at job start Mon Mar 30 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47276 * 2 1 4 4 H 1.08998 * 109.47546 * 54.99912 * 3 2 1 5 5 C 1.50703 * 109.47346 * 175.00150 * 3 2 1 6 6 H 1.07995 * 119.99799 * 119.99387 * 5 3 2 7 7 C 1.37876 * 119.99906 * 299.72368 * 5 3 2 8 8 N 1.31519 * 119.99916 * 0.27671 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 180.27250 * 7 5 3 10 10 H 1.48504 * 109.46860 * 60.00073 * 9 7 5 11 11 H 1.48504 * 109.46930 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47217 * 299.99870 * 9 7 5 13 13 N 1.46508 * 109.46760 * 294.99900 * 3 2 1 14 14 C 1.34774 * 119.99659 * 85.00503 * 13 3 2 15 15 O 1.21602 * 120.00109 * 359.97438 * 14 13 3 16 16 C 1.47436 * 119.99935 * 179.97438 * 14 13 3 17 17 C 1.39756 * 120.19270 * 354.06089 * 16 14 13 18 18 C 1.37931 * 119.89951 * 180.02562 * 17 16 14 19 19 F 1.35098 * 119.85354 * 180.02562 * 18 17 16 20 20 C 1.38784 * 120.29944 * 0.02562 * 18 17 16 21 21 C 1.37964 * 120.40090 * 359.95447 * 20 18 17 22 22 C 1.38923 * 120.08935 * 359.76627 * 21 20 18 23 23 N 1.39000 * 120.15303 * 180.25037 * 22 21 20 24 24 H 1.09010 * 109.46818 * 300.00038 * 1 2 3 25 25 H 1.08998 * 109.47703 * 60.00135 * 1 2 3 26 26 H 1.08997 * 109.47610 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47213 * 239.99606 * 2 1 3 28 28 H 1.09004 * 109.47285 * 119.99865 * 2 1 3 29 29 H 0.96999 * 119.99886 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99984 * 264.99830 * 13 3 2 31 31 H 1.08007 * 120.05272 * 359.97438 * 17 16 14 32 32 H 1.08007 * 119.79890 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.95510 * 180.02562 * 21 20 18 34 34 H 0.96998 * 120.00132 * 185.74974 * 23 22 21 35 35 H 0.97000 * 119.99918 * 5.75623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8888 -0.6524 7 6 4.1431 0.8835 1.2306 8 7 3.4060 0.3421 2.1758 9 14 6.0044 0.8925 1.3877 10 1 6.4946 2.2943 1.3849 11 1 6.3970 0.2339 2.6595 12 1 6.6013 0.1570 0.2441 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4319 16 6 0.0452 3.3240 -2.6266 17 6 0.9753 3.4733 -3.6590 18 6 0.6042 4.0918 -4.8347 19 9 1.5039 4.2351 -5.8323 20 6 -0.6893 4.5676 -4.9975 21 6 -1.6176 4.4265 -3.9866 22 6 -1.2631 3.8010 -2.7979 23 7 -2.1987 3.6534 -1.7806 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8289 -0.0521 2.9546 30 1 2.2719 2.1231 -1.9979 31 1 1.9834 3.1056 -3.5362 32 1 -0.9711 5.0510 -5.9213 33 1 -2.6223 4.7990 -4.1212 34 1 -1.9285 3.2925 -0.9217 35 1 -3.1218 3.9113 -1.9295 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054179897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:19 Heat of formation + Delta-G solvation = -79.887708 kcal Electronic energy + Delta-G solvation = -20147.095015 eV Core-core repulsion = 16865.352407 eV Total energy + Delta-G solvation = -3281.742608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.65273 -41.35305 -39.30731 -37.00034 -35.31311 -34.22358 -33.19183 -31.76462 -29.36068 -28.74908 -25.48760 -24.67284 -23.21378 -22.05975 -21.23579 -19.53196 -18.33166 -18.00407 -17.92611 -17.14565 -16.82806 -16.52393 -16.16279 -16.08727 -15.79354 -15.19586 -14.62541 -14.60060 -14.11823 -13.84882 -13.71195 -13.55121 -13.33751 -13.16927 -12.91132 -12.66553 -12.39346 -12.16321 -12.06502 -11.58549 -11.37005 -11.06825 -10.68019 -10.51227 -10.14219 -9.65656 -8.42364 -8.16646 -6.33690 -0.11995 0.42745 1.44778 1.46050 1.53792 1.95242 2.35069 2.61830 2.85827 3.03171 3.12980 3.41393 3.75317 3.83763 4.19958 4.35484 4.50183 4.57985 4.65313 4.78321 4.85298 5.06614 5.07846 5.12559 5.23311 5.27886 5.43603 5.53894 5.59269 5.78950 5.84803 5.90664 6.15680 6.54524 6.73079 6.91069 7.03520 7.33473 7.54983 8.88326 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.005525 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.127399 B = 5066.696106 C = 5988.467958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.005 0.995 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.700 5.700 14 C 0.554 3.446 15 O -0.580 6.580 16 C -0.222 4.222 17 C -0.073 4.073 18 C 0.007 3.993 19 F -0.151 7.151 20 C -0.064 4.064 21 C -0.177 4.177 22 C 0.262 3.738 23 N -0.851 5.851 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.265 0.735 30 H 0.399 0.601 31 H 0.137 0.863 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.411 0.589 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 6.845 -13.538 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.023 0.977 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.347 5.347 14 C 0.344 3.656 15 O -0.464 6.464 16 C -0.230 4.230 17 C -0.093 4.093 18 C -0.014 4.014 19 F -0.130 7.130 20 C -0.084 4.084 21 C -0.199 4.199 22 C 0.148 3.852 23 N -0.397 5.397 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.235 0.765 31 H 0.155 0.845 32 H 0.187 0.813 33 H 0.188 0.812 34 H 0.252 0.748 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -9.586 6.674 -12.639 17.209 hybrid contribution 1.299 -0.226 0.360 1.367 sum -8.287 6.447 -12.279 16.156 Atomic orbital electron populations 1.21670 0.96718 0.99170 1.00421 1.21783 0.94039 0.99022 1.01172 1.18410 0.93608 0.89246 0.81120 0.97721 1.21541 0.91554 1.39292 1.06616 0.91404 1.25710 1.03134 0.94305 0.94983 1.70027 1.37048 1.38282 1.09686 0.85469 0.79320 0.78405 0.77570 1.19795 1.21010 1.19089 1.46176 1.15281 1.55591 1.17683 1.18381 0.82005 0.78066 0.87138 1.90341 1.51613 1.62757 1.41680 1.19190 0.95445 1.12529 0.95884 1.21118 0.99787 0.96910 0.91522 1.17345 0.88977 1.08383 0.86703 1.91454 1.67248 1.94740 1.59552 1.21354 0.90087 0.96397 1.00556 1.20812 1.02247 1.05260 0.91602 1.18062 0.87719 0.89720 0.89661 1.43501 1.10463 1.69785 1.15961 0.94933 0.93823 0.93747 0.94467 0.90873 0.92546 0.76519 0.84497 0.81316 0.81157 0.74815 0.76278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.78 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.26 2.24 44.25 0.10 14.36 16 4 H 0.00 0.29 7.58 -2.39 -0.02 0.28 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.09 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.03 5.30 84.65 0.45 1.48 16 8 N -0.91 -51.77 11.30 21.45 0.24 -51.52 16 9 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 N -0.70 -29.48 4.97 -449.34 -2.23 -31.71 16 14 C 0.55 22.06 6.31 86.67 0.55 22.61 16 15 O -0.58 -25.46 10.77 -4.04 -0.04 -25.51 16 16 C -0.22 -7.02 5.89 -19.98 -0.12 -7.14 16 17 C -0.07 -2.06 9.49 22.56 0.21 -1.85 16 18 C 0.01 0.18 7.28 22.33 0.16 0.34 16 19 F -0.15 -3.85 17.26 44.97 0.78 -3.08 16 20 C -0.06 -1.19 10.00 22.34 0.22 -0.97 16 21 C -0.18 -3.26 9.88 22.37 0.22 -3.04 16 22 C 0.26 6.83 6.76 38.67 0.26 7.10 16 23 N -0.85 -20.96 8.94 -50.91 -0.46 -21.42 16 24 H 0.03 1.51 7.84 -2.38 -0.02 1.50 16 25 H 0.04 1.86 5.64 -2.39 -0.01 1.84 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 4.00 5.96 -2.38 -0.01 3.99 16 29 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.40 14.89 6.60 -92.71 -0.61 14.28 16 31 H 0.14 3.71 6.45 -2.91 -0.02 3.69 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.41 12.76 5.34 -94.74 -0.51 12.26 16 35 H 0.41 6.77 8.84 -92.71 -0.82 5.95 16 Total: -1.00 -63.42 292.66 2.60 -60.83 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.78 Total: 34.98 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 3.06 Total: -6.78 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -2.45 Total: -104.65 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -63.42 2.60 -60.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.061 kcal (2) G-P(sol) polarization free energy of solvation -63.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds