Wall clock time and date at job start Mon Mar 30 2020 05:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 H 1.08997 * 109.46865 * 305.00037 * 3 2 1 5 5 C 1.50700 * 109.46781 * 185.00228 * 3 2 1 6 6 H 1.07998 * 119.99260 * 239.99660 * 5 3 2 7 7 C 1.37871 * 120.00253 * 60.00080 * 5 3 2 8 8 N 1.31515 * 120.00149 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99858 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47238 * 59.99892 * 9 7 5 11 11 H 1.48507 * 109.47046 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47149 * 299.99678 * 9 7 5 13 13 N 1.46497 * 109.47133 * 65.00091 * 3 2 1 14 14 C 1.34783 * 119.99836 * 274.99949 * 13 3 2 15 15 O 1.21601 * 119.99920 * 359.97438 * 14 13 3 16 16 C 1.47432 * 119.99706 * 180.02562 * 14 13 3 17 17 C 1.39762 * 120.19707 * 354.06864 * 16 14 13 18 18 C 1.37931 * 119.89624 * 180.02562 * 17 16 14 19 19 F 1.35108 * 119.84968 * 179.97438 * 18 17 16 20 20 C 1.38783 * 120.30346 * 0.02562 * 18 17 16 21 21 C 1.37960 * 120.40141 * 359.95728 * 20 18 17 22 22 C 1.38933 * 120.08928 * 359.76277 * 21 20 18 23 23 N 1.38991 * 120.15041 * 180.25813 * 22 21 20 24 24 H 1.09003 * 109.46628 * 59.99896 * 1 2 3 25 25 H 1.08996 * 109.46700 * 300.00283 * 1 2 3 26 26 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46628 * 120.00104 * 2 1 3 28 28 H 1.08996 * 109.46700 * 239.99717 * 2 1 3 29 29 H 0.97001 * 120.00174 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00101 * 94.99499 * 13 3 2 31 31 H 1.07996 * 120.05043 * 359.97438 * 17 16 14 32 32 H 1.08006 * 119.79772 * 179.97438 * 20 18 17 33 33 H 1.08002 * 119.95712 * 180.02562 * 21 20 18 34 34 H 0.97000 * 120.00268 * 185.75213 * 23 22 21 35 35 H 0.96999 * 120.00015 * 5.75082 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0051 0.8799 -1.3811 10 1 6.5967 0.1451 -0.2343 11 1 6.3980 0.2155 -2.6498 12 1 6.5006 2.2798 -1.3808 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6326 0.4316 16 6 0.0454 3.3240 2.6265 17 6 0.8829 3.2574 3.7434 18 6 0.5119 3.8763 4.9189 19 9 1.3220 3.8108 5.9981 20 6 -0.6903 4.5651 4.9984 21 6 -1.5263 4.6391 3.9035 22 6 -1.1662 4.0267 2.7095 23 7 -2.0050 4.1050 1.6040 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 0.5139 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.8293 -0.0619 -2.9495 30 1 2.2720 2.1231 1.9978 31 1 1.8188 2.7214 3.6864 32 1 -0.9729 5.0465 5.9231 33 1 -2.4600 5.1775 3.9732 34 1 -1.7930 3.6083 0.7982 35 1 -2.8023 4.6563 1.6383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054179898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:24 Heat of formation + Delta-G solvation = -79.865241 kcal Electronic energy + Delta-G solvation = -20141.156005 eV Core-core repulsion = 16859.414371 eV Total energy + Delta-G solvation = -3281.741634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.65005 -41.35205 -39.30902 -37.00454 -35.31256 -34.22412 -33.18907 -31.76780 -29.36361 -28.74729 -25.48561 -24.67780 -23.21432 -22.05503 -21.23740 -19.53070 -18.32376 -18.00703 -17.92631 -17.18453 -16.82772 -16.51190 -16.15816 -16.08281 -15.77665 -15.19468 -14.62467 -14.59972 -14.15225 -13.82509 -13.69064 -13.58428 -13.34259 -13.16919 -12.90687 -12.66471 -12.39151 -12.16612 -12.06390 -11.58258 -11.37166 -11.06827 -10.67878 -10.51297 -10.14585 -9.65514 -8.42444 -8.16600 -6.33668 -0.12010 0.42703 1.44812 1.46030 1.53796 1.95173 2.35066 2.61843 2.85787 3.03056 3.13025 3.41275 3.75261 3.83728 4.19911 4.35428 4.50191 4.57901 4.65271 4.78309 4.85187 5.06495 5.07806 5.12520 5.23246 5.27860 5.43629 5.53885 5.59297 5.78952 5.84770 5.90639 6.15798 6.54380 6.73073 6.90988 7.03306 7.33491 7.54967 8.88352 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.005461 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.180065 B = 5126.477314 C = 5930.528660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.005 0.995 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.554 3.446 15 O -0.580 6.580 16 C -0.222 4.222 17 C -0.073 4.073 18 C 0.007 3.993 19 F -0.151 7.151 20 C -0.064 4.064 21 C -0.177 4.177 22 C 0.262 3.738 23 N -0.851 5.851 24 H 0.031 0.969 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.265 0.735 30 H 0.399 0.601 31 H 0.138 0.862 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.411 0.589 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 7.599 13.242 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.023 0.977 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.344 3.656 15 O -0.464 6.464 16 C -0.230 4.230 17 C -0.093 4.093 18 C -0.014 4.014 19 F -0.130 7.130 20 C -0.084 4.084 21 C -0.199 4.199 22 C 0.148 3.852 23 N -0.397 5.397 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.235 0.765 31 H 0.155 0.845 32 H 0.187 0.813 33 H 0.188 0.812 34 H 0.252 0.748 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -9.245 7.414 12.348 17.114 hybrid contribution 1.284 -0.248 -0.350 1.353 sum -7.961 7.166 11.998 16.083 Atomic orbital electron populations 1.21673 0.96753 0.99168 1.00405 1.21791 0.93991 0.99053 1.01209 1.18405 0.93607 0.89228 0.81130 0.97710 1.21537 0.91544 1.39168 1.06743 0.91418 1.25706 1.03130 0.94302 0.94978 1.70024 1.37041 1.38159 1.09815 0.85470 0.79325 0.78401 0.77575 1.19110 1.21006 1.19781 1.46175 1.15203 1.55674 1.17678 1.18381 0.82005 0.77992 0.87208 1.90341 1.51695 1.62529 1.41821 1.19190 0.98319 1.10980 0.94560 1.21115 0.99355 0.97670 0.91161 1.17346 0.92802 1.07169 0.84085 1.91458 1.72605 1.95588 1.53337 1.21352 0.90913 0.95598 1.00530 1.20812 1.03075 1.05977 0.90062 1.18069 0.87784 0.90347 0.89001 1.43503 1.27007 1.53421 1.15807 0.94937 0.93882 0.93742 0.94443 0.90833 0.92542 0.76518 0.84459 0.81315 0.81170 0.74820 0.76284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.99 0.61 -4.82 16 2 C -0.12 -5.97 5.45 30.60 0.17 -5.80 16 3 C 0.28 14.27 2.24 44.25 0.10 14.37 16 4 H 0.01 0.30 7.58 -2.39 -0.02 0.28 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.08 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.74 11.29 21.45 0.24 -51.49 16 9 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.70 -29.47 4.97 -449.37 -2.23 -31.71 16 14 C 0.55 22.06 6.31 86.66 0.55 22.61 16 15 O -0.58 -25.47 10.78 -4.03 -0.04 -25.51 16 16 C -0.22 -7.02 5.89 -19.98 -0.12 -7.14 16 17 C -0.07 -2.05 9.49 22.57 0.21 -1.83 16 18 C 0.01 0.18 7.28 22.33 0.16 0.34 16 19 F -0.15 -3.84 17.26 44.97 0.78 -3.06 16 20 C -0.06 -1.19 10.00 22.33 0.22 -0.97 16 21 C -0.18 -3.28 9.88 22.37 0.22 -3.05 16 22 C 0.26 6.85 6.76 38.68 0.26 7.11 16 23 N -0.85 -21.11 8.94 -50.91 -0.45 -21.56 16 24 H 0.03 1.52 7.84 -2.39 -0.02 1.50 16 25 H 0.04 1.85 5.64 -2.39 -0.01 1.83 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 4.03 5.95 -2.39 -0.01 4.01 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.40 14.88 6.60 -92.71 -0.61 14.27 16 31 H 0.14 3.70 6.45 -2.91 -0.02 3.68 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.41 12.83 5.34 -94.76 -0.51 12.32 16 35 H 0.41 6.84 8.84 -92.71 -0.82 6.02 16 Total: -1.00 -63.38 292.64 2.60 -60.79 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.78 Total: 35.16 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 3.06 Total: -6.79 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -2.45 Total: -104.76 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -63.38 2.60 -60.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.077 kcal (2) G-P(sol) polarization free energy of solvation -63.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds