Wall clock time and date at job start Mon Mar 30 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.39011 * 110.99973 * 2 1 4 4 C 1.39167 * 120.18380 * 299.71794 * 3 2 1 5 5 F 1.35101 * 119.98349 * 0.02562 * 4 3 2 6 6 C 1.38098 * 120.02594 * 179.79164 * 4 3 2 7 7 C 1.38630 * 120.39543 * 0.47146 * 6 4 3 8 8 C 1.37711 * 120.37229 * 359.78251 * 7 6 4 9 9 C 1.39781 * 119.96361 * 359.97438 * 8 7 6 10 10 C 1.47442 * 120.19214 * 179.97438 * 9 8 7 11 11 O 1.21604 * 119.99871 * 127.04629 * 10 9 8 12 12 N 1.34777 * 120.00153 * 307.03791 * 10 9 8 13 13 C 1.46499 * 119.99801 * 4.87361 * 12 10 9 14 14 C 1.46496 * 120.00029 * 184.86950 * 12 10 9 15 15 C 1.50694 * 109.47337 * 90.00479 * 14 12 10 16 16 H 1.08008 * 119.99981 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00089 * 179.97438 * 15 14 12 18 18 N 1.31513 * 120.00260 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00036 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47075 * 59.99973 * 19 17 15 21 21 H 1.48500 * 109.47148 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47339 * 300.00224 * 19 17 15 23 23 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47146 * 300.00869 * 1 2 3 25 25 H 1.09003 * 109.46427 * 59.99886 * 1 2 3 26 26 H 1.00891 * 110.99626 * 236.03989 * 2 1 3 27 27 H 1.08000 * 119.79939 * 180.22722 * 6 4 3 28 28 H 1.08001 * 119.80963 * 179.76634 * 7 6 4 29 29 H 1.08004 * 120.01363 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.47127 * 125.42994 * 13 12 10 31 31 H 1.09002 * 109.47190 * 245.43191 * 13 12 10 32 32 H 1.09000 * 109.47009 * 5.42825 * 13 12 10 33 33 H 1.08999 * 109.46922 * 210.00211 * 14 12 10 34 34 H 1.09000 * 109.47182 * 329.99979 * 14 12 10 35 35 H 0.97000 * 119.99996 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9672 1.2978 0.0000 4 6 1.6612 2.1647 -1.0448 5 9 0.8775 1.7456 -2.0623 6 6 2.1543 3.4546 -1.0393 7 6 2.9632 3.8920 -0.0019 8 6 3.2807 3.0462 1.0376 9 6 2.7857 1.7390 1.0501 10 6 3.1229 0.8291 2.1601 11 8 2.2382 0.2565 2.7670 12 7 4.4115 0.6319 2.5022 13 6 5.4701 1.4011 1.8436 14 6 4.7535 -0.3516 3.5327 15 6 4.9816 -1.6950 2.8890 16 1 4.8814 -1.8052 1.8192 17 6 5.3183 -2.7833 3.6656 18 7 5.4399 -2.6492 4.9682 19 14 5.6003 -4.4487 2.8678 20 1 6.7137 -4.3472 1.8905 21 1 5.9471 -5.4456 3.9124 22 1 4.3636 -4.8773 2.1663 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8305 -0.5262 -0.7813 27 1 1.9115 4.1255 -1.8501 28 1 3.3468 4.9015 -0.0091 29 1 3.9110 3.3931 1.8430 30 1 6.0767 1.9036 2.5971 31 1 6.0990 0.7284 1.2604 32 1 5.0224 2.1437 1.1832 33 1 5.6609 -0.0371 4.0482 34 1 3.9358 -0.4263 4.2494 35 1 5.6771 -3.4149 5.5146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054205336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:00 Heat of formation + Delta-G solvation = -32.059770 kcal Electronic energy + Delta-G solvation = -20362.298198 eV Core-core repulsion = 17082.629565 eV Total energy + Delta-G solvation = -3279.668633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -49.11050 -40.02430 -37.85699 -35.81589 -34.62728 -32.63174 -30.99608 -29.61765 -27.66188 -25.94993 -25.26437 -23.88673 -22.40003 -21.77065 -19.17736 -17.48453 -17.00126 -16.69948 -16.42597 -15.97543 -15.52023 -15.22811 -15.16180 -14.46106 -14.22575 -14.07923 -13.38939 -13.03988 -12.86234 -12.57756 -12.20796 -12.10650 -12.03502 -11.90011 -11.54941 -11.35197 -11.13724 -10.85034 -10.52662 -10.10430 -9.59123 -9.13131 -8.78882 -8.72357 -8.49574 -8.37572 -7.56776 -5.98917 -4.02822 0.90291 0.99363 3.19659 3.35810 3.39926 3.42897 3.58281 4.00144 4.09474 4.22245 4.49385 4.65602 4.83057 5.06290 5.10979 5.35258 5.42504 5.51240 5.56846 5.64212 5.82365 5.91628 5.97353 6.03587 6.11691 6.18492 6.28246 6.58144 7.08318 7.11693 7.42126 7.49790 7.59431 7.97957 8.29345 8.44995 8.95830 9.14738 9.61677 11.09273 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.005852 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.122630 B = 4783.436369 C = 5395.416850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.635 5.635 3 C 0.107 3.893 4 C 0.053 3.947 5 F -0.139 7.139 6 C -0.138 4.138 7 C -0.102 4.102 8 C -0.100 4.100 9 C -0.065 4.065 10 C 0.557 3.443 11 O -0.514 6.514 12 N -0.597 5.597 13 C 0.068 3.932 14 C 0.247 3.753 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.354 0.646 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 13.468 -12.081 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.266 5.266 3 C 0.009 3.991 4 C 0.031 3.969 5 F -0.117 7.117 6 C -0.158 4.158 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.069 4.069 10 C 0.342 3.658 11 O -0.389 6.389 12 N -0.329 5.329 13 C -0.075 4.075 14 C 0.128 3.872 15 C -0.562 4.562 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.536 5.536 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.178 0.822 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.587 12.884 -10.915 17.498 hybrid contribution -0.021 -0.788 -1.608 1.791 sum -4.608 12.096 -12.523 18.011 Atomic orbital electron populations 1.22292 0.85402 1.02849 1.01044 1.57366 1.09058 1.09838 1.50324 1.18634 0.97374 0.90579 0.92503 1.18548 0.96299 0.94827 0.87218 1.91444 1.72122 1.90532 1.57638 1.21128 0.99723 0.94268 1.00670 1.20913 0.97710 1.00030 0.93388 1.21410 0.98948 0.92385 0.99195 1.20242 0.96732 0.94846 0.95123 1.17672 0.83459 0.81703 0.82944 1.90767 1.46930 1.48260 1.52944 1.48038 1.04430 1.40163 1.40303 1.21989 0.91745 0.96059 0.97749 1.19279 0.96729 0.85384 0.85758 1.21397 1.46963 0.93706 0.94111 0.92441 1.24918 0.95424 0.98971 0.94772 1.69922 1.48349 1.31150 1.04154 0.86564 0.78611 0.83413 0.78853 1.20338 1.21240 1.20166 0.90593 0.91083 0.95058 0.82161 0.84771 0.84514 0.84114 0.92475 0.92497 0.91032 0.94957 0.93639 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.36 60.07 0.62 1.08 16 2 N -0.64 -10.74 5.79 -64.83 -0.38 -11.12 16 3 C 0.11 1.72 5.58 -83.50 -0.47 1.26 16 4 C 0.05 0.71 6.98 -39.29 -0.27 0.44 16 5 F -0.14 -1.84 15.10 2.25 0.03 -1.80 16 6 C -0.14 -1.48 10.00 -39.49 -0.40 -1.87 16 7 C -0.10 -1.01 10.02 -39.63 -0.40 -1.41 16 8 C -0.10 -1.26 7.33 -39.20 -0.29 -1.55 16 9 C -0.06 -1.10 5.06 -104.81 -0.53 -1.63 16 10 C 0.56 12.16 6.82 -12.51 -0.09 12.07 16 11 O -0.51 -13.43 16.19 5.27 0.09 -13.35 16 12 N -0.60 -12.99 2.86 -184.23 -0.53 -13.51 16 13 C 0.07 1.11 10.02 59.85 0.60 1.71 16 14 C 0.25 6.58 5.24 -5.20 -0.03 6.55 16 15 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 16 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 19 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.03 0.40 6.06 -51.93 -0.31 0.09 16 26 H 0.35 5.37 8.84 -39.30 -0.35 5.03 16 27 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.14 1.54 7.09 -52.48 -0.37 1.17 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.95 3.91 -51.93 -0.20 0.74 16 33 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 302.49 15.07 4.56 4.56 Total: -1.00 -34.14 302.49 -6.29 -40.43 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.12 Total: 0.89 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.66 Total: 2.92 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.17 Total: -50.82 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.80 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.14 -6.29 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054205336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.374 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds