Wall clock time and date at job start Mon Mar 30 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47411 * 2 1 4 4 C 1.46506 * 119.99712 * 264.91072 * 3 2 1 5 5 C 1.50696 * 109.46996 * 269.99447 * 4 3 2 6 6 H 1.08006 * 119.99977 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00006 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99883 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46814 * 90.00174 * 9 7 5 11 11 H 1.48497 * 109.46853 * 210.00432 * 9 7 5 12 12 H 1.48501 * 109.47018 * 330.00057 * 9 7 5 13 13 C 1.34771 * 120.00126 * 84.90667 * 3 2 1 14 14 O 1.21605 * 119.99974 * 185.49588 * 13 3 2 15 15 C 1.47442 * 120.00076 * 5.49911 * 13 3 2 16 16 C 1.39788 * 120.19484 * 55.02272 * 15 13 3 17 17 C 1.37705 * 119.96551 * 180.29820 * 16 15 13 18 18 C 1.38631 * 120.36948 * 359.97438 * 17 16 15 19 19 C 1.38104 * 120.39785 * 359.97438 * 18 17 16 20 20 F 1.35095 * 119.98441 * 180.02562 * 19 18 17 21 21 C 1.39160 * 120.02121 * 0.02630 * 19 18 17 22 22 N 1.39022 * 120.17761 * 179.97438 * 21 19 18 23 23 H 1.08999 * 109.47215 * 300.00023 * 1 2 3 24 24 H 1.09000 * 109.47011 * 59.99704 * 1 2 3 25 25 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46819 * 239.99455 * 2 1 3 27 27 H 1.09000 * 109.47011 * 120.00296 * 2 1 3 28 28 H 1.08994 * 109.47452 * 29.99906 * 4 3 2 29 29 H 1.09005 * 109.46839 * 150.00367 * 4 3 2 30 30 H 0.96997 * 120.00236 * 180.02562 * 8 7 5 31 31 H 1.08008 * 120.01831 * 0.25357 * 16 15 13 32 32 H 1.08004 * 119.82047 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.80521 * 180.02562 * 18 17 16 34 34 H 0.97003 * 119.99857 * 185.00518 * 22 21 19 35 35 H 0.96996 * 120.00278 * 5.00599 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3687 2.0342 -1.2638 5 6 3.8231 1.7864 -1.5710 6 1 4.4261 1.2007 -0.8929 7 6 4.3837 2.3065 -2.7183 8 7 3.6494 3.0193 -3.5442 9 14 6.1864 1.9988 -3.0994 10 1 6.3179 0.7532 -3.8973 11 1 6.7308 3.1427 -3.8740 12 1 6.9433 1.8557 -1.8298 13 6 2.1454 2.0510 1.1625 14 8 2.4545 3.2271 1.1559 15 6 1.9096 1.3579 2.4423 16 6 2.6146 0.1907 2.7501 17 6 2.3862 -0.4562 3.9440 18 6 1.4597 0.0436 4.8460 19 6 0.7554 1.1962 4.5579 20 9 -0.1452 1.6762 5.4431 21 6 0.9732 1.8631 3.3561 22 7 0.2658 3.0233 3.0625 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7534 1.6270 -2.0660 29 1 2.1929 3.1067 -1.1795 30 1 4.0437 3.3849 -4.3515 31 1 3.3376 -0.2039 2.0514 32 1 2.9320 -1.3581 4.1792 33 1 1.2880 -0.4708 5.7799 34 1 0.3656 3.4459 2.1951 35 1 -0.3277 3.4103 3.7251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054210881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:42 Heat of formation + Delta-G solvation = -56.368240 kcal Electronic energy + Delta-G solvation = -20366.516102 eV Core-core repulsion = 17085.793375 eV Total energy + Delta-G solvation = -3280.722727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.77624 -40.00560 -37.81391 -35.48320 -34.44581 -32.85415 -30.76429 -30.09338 -28.66488 -27.04788 -24.17266 -23.13026 -22.25370 -21.97119 -19.07138 -17.65824 -17.04095 -16.95867 -16.40417 -15.86868 -15.49812 -15.38694 -14.93950 -14.53203 -14.29857 -14.14608 -13.38144 -13.10358 -12.93368 -12.66269 -12.25808 -12.03459 -11.91546 -11.58782 -11.46046 -11.23748 -10.95760 -10.88630 -10.66104 -10.45553 -10.15205 -9.66989 -9.09800 -8.68251 -8.45749 -7.71263 -7.51781 -6.07223 -4.12378 1.07071 1.46576 3.22619 3.28608 3.35625 3.40019 3.70105 3.80946 3.93226 4.37152 4.44347 4.76129 5.00725 5.11397 5.27669 5.30634 5.42118 5.61390 5.66060 5.79348 5.94862 6.03030 6.11186 6.23236 6.25811 6.45918 6.50216 6.78464 7.03217 7.39102 7.39717 7.51158 7.72747 7.89030 8.19436 8.35765 8.84054 9.00912 9.52993 11.00773 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.005288 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.849420 B = 5293.872114 C = 5400.339153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.586 5.586 4 C 0.245 3.755 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.555 3.445 14 O -0.539 6.539 15 C -0.172 4.172 16 C -0.048 4.048 17 C -0.161 4.161 18 C -0.093 4.093 19 C 0.003 3.997 20 F -0.146 7.146 21 C 0.233 3.767 22 N -0.857 5.857 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.412 0.588 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 -8.060 13.197 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.317 5.317 4 C 0.126 3.874 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.342 3.658 14 O -0.418 6.418 15 C -0.181 4.181 16 C -0.067 4.067 17 C -0.181 4.181 18 C -0.112 4.112 19 C -0.020 4.020 20 F -0.125 7.125 21 C 0.123 3.877 22 N -0.395 5.395 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.243 0.757 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.950 -7.306 12.981 16.437 hybrid contribution 0.658 0.201 -0.221 0.723 sum -6.292 -7.105 12.760 15.902 Atomic orbital electron populations 1.22178 0.96809 1.01446 1.02010 1.21623 0.93592 0.84167 1.03135 1.48211 1.62292 1.13285 1.07899 1.19333 0.95586 0.94374 0.78143 1.21431 0.95300 1.33482 1.06497 0.92390 1.24930 0.98223 0.94850 0.96018 1.69925 1.36190 1.34723 1.12449 0.86496 0.84825 0.77744 0.78370 1.20595 1.21089 1.19854 1.17888 0.78227 0.86437 0.83260 1.90771 1.48158 1.15686 1.87168 1.19542 1.01904 0.99596 0.97069 1.21140 0.96978 0.92051 0.96502 1.20637 1.00999 1.02030 0.94466 1.20958 0.95803 0.94158 1.00329 1.16961 0.97634 0.98255 0.89197 1.91420 1.65761 1.88130 1.67178 1.17558 0.91152 0.87419 0.91533 1.42371 1.49491 1.26918 1.20767 0.93211 0.92292 0.92142 0.89819 0.90903 0.94843 0.93733 0.92683 0.84652 0.85055 0.84921 0.75674 0.77109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.20 37.16 0.38 -1.95 16 2 C 0.10 1.60 5.90 -4.04 -0.02 1.58 16 3 N -0.59 -12.21 2.47 -176.32 -0.43 -12.64 16 4 C 0.24 6.27 5.18 -5.19 -0.03 6.24 16 5 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.56 11.61 6.34 -12.51 -0.08 11.53 16 14 O -0.54 -13.38 15.58 5.27 0.08 -13.30 16 15 C -0.17 -2.89 4.88 -104.81 -0.51 -3.40 16 16 C -0.05 -0.67 7.59 -39.20 -0.30 -0.96 16 17 C -0.16 -1.82 10.02 -39.63 -0.40 -2.22 16 18 C -0.09 -1.06 10.00 -39.49 -0.39 -1.46 16 19 C 0.00 0.05 7.30 -39.29 -0.29 -0.24 16 20 F -0.15 -1.93 16.64 2.25 0.04 -1.89 16 21 C 0.23 3.57 6.76 -83.50 -0.56 3.01 16 22 N -0.86 -12.21 8.92 32.60 0.29 -11.92 16 23 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 27 H 0.07 1.03 4.53 -51.93 -0.24 0.79 16 28 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.04 1.29 7.35 -51.93 -0.38 0.90 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.14 1.84 7.38 -52.48 -0.39 1.45 16 32 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.41 6.48 7.01 -40.82 -0.29 6.19 16 35 H 0.40 4.68 8.32 -40.82 -0.34 4.34 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -31.89 304.03 -6.47 -38.37 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.12 Total: 6.99 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.62 Total: -1.25 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.59 Total: -50.06 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.89 -6.47 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054210881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.002 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds