Wall clock time and date at job start Mon Mar 30 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47411 * 2 1 4 4 C 1.46506 * 119.99712 * 264.91072 * 3 2 1 5 5 C 1.50696 * 109.46996 * 269.99447 * 4 3 2 6 6 H 1.08006 * 119.99977 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00006 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99883 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46814 * 90.00174 * 9 7 5 11 11 H 1.48497 * 109.46853 * 210.00432 * 9 7 5 12 12 H 1.48501 * 109.47018 * 330.00057 * 9 7 5 13 13 C 1.34771 * 120.00126 * 84.90667 * 3 2 1 14 14 O 1.21605 * 119.99974 * 185.49588 * 13 3 2 15 15 C 1.47442 * 120.00076 * 5.49911 * 13 3 2 16 16 C 1.39788 * 120.19484 * 55.02272 * 15 13 3 17 17 C 1.37705 * 119.96551 * 180.29820 * 16 15 13 18 18 C 1.38631 * 120.36948 * 359.97438 * 17 16 15 19 19 C 1.38104 * 120.39785 * 359.97438 * 18 17 16 20 20 F 1.35095 * 119.98441 * 180.02562 * 19 18 17 21 21 C 1.39160 * 120.02121 * 0.02630 * 19 18 17 22 22 N 1.39022 * 120.17761 * 179.97438 * 21 19 18 23 23 H 1.08999 * 109.47215 * 300.00023 * 1 2 3 24 24 H 1.09000 * 109.47011 * 59.99704 * 1 2 3 25 25 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46819 * 239.99455 * 2 1 3 27 27 H 1.09000 * 109.47011 * 120.00296 * 2 1 3 28 28 H 1.08994 * 109.47452 * 29.99906 * 4 3 2 29 29 H 1.09005 * 109.46839 * 150.00367 * 4 3 2 30 30 H 0.96997 * 120.00236 * 180.02562 * 8 7 5 31 31 H 1.08008 * 120.01831 * 0.25357 * 16 15 13 32 32 H 1.08004 * 119.82047 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.80521 * 180.02562 * 18 17 16 34 34 H 0.97003 * 119.99857 * 185.00518 * 22 21 19 35 35 H 0.96996 * 120.00278 * 5.00599 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3687 2.0342 -1.2638 5 6 3.8231 1.7864 -1.5710 6 1 4.4261 1.2007 -0.8929 7 6 4.3837 2.3065 -2.7183 8 7 3.6494 3.0193 -3.5442 9 14 6.1864 1.9988 -3.0994 10 1 6.3179 0.7532 -3.8973 11 1 6.7308 3.1427 -3.8740 12 1 6.9433 1.8557 -1.8298 13 6 2.1454 2.0510 1.1625 14 8 2.4545 3.2271 1.1559 15 6 1.9096 1.3579 2.4423 16 6 2.6146 0.1907 2.7501 17 6 2.3862 -0.4562 3.9440 18 6 1.4597 0.0436 4.8460 19 6 0.7554 1.1962 4.5579 20 9 -0.1452 1.6762 5.4431 21 6 0.9732 1.8631 3.3561 22 7 0.2658 3.0233 3.0625 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7534 1.6270 -2.0660 29 1 2.1929 3.1067 -1.1795 30 1 4.0437 3.3849 -4.3515 31 1 3.3376 -0.2039 2.0514 32 1 2.9320 -1.3581 4.1792 33 1 1.2880 -0.4708 5.7799 34 1 0.3656 3.4459 2.1951 35 1 -0.3277 3.4103 3.7251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054210881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:40 Heat of formation + Delta-G solvation = -77.456274 kcal Electronic energy + Delta-G solvation = -20367.430548 eV Core-core repulsion = 17085.793375 eV Total energy + Delta-G solvation = -3281.637173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.80047 -41.38862 -39.15727 -37.07950 -35.59488 -34.91221 -32.07180 -31.52406 -29.76927 -28.89382 -25.72144 -24.68409 -23.58219 -23.15400 -20.49951 -18.88896 -18.53789 -18.27544 -18.07325 -17.42880 -16.82578 -16.58074 -16.24765 -16.02747 -15.65512 -15.45200 -14.75482 -14.56022 -14.34461 -13.95697 -13.80281 -13.54566 -13.28516 -13.08890 -12.85174 -12.67989 -12.59200 -12.47261 -12.19440 -12.02473 -11.73045 -11.61815 -10.72605 -10.64031 -9.83280 -9.42987 -8.61497 -8.22225 -6.37427 -0.01925 0.43035 1.37795 1.40772 1.50926 1.75749 2.24252 2.42068 2.67963 2.74707 3.07490 3.25788 3.66517 3.94506 4.03641 4.17437 4.35550 4.41381 4.53303 4.64088 4.85956 4.93350 4.97086 5.01339 5.05001 5.21512 5.30374 5.33195 5.45820 5.56833 5.81041 5.83610 6.05211 6.26440 6.60749 6.69546 6.75984 7.24780 7.40615 8.84836 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.005288 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.849420 B = 5293.872114 C = 5400.339153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.094 3.906 3 N -0.590 5.590 4 C 0.260 3.740 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.553 3.447 14 O -0.593 6.593 15 C -0.198 4.198 16 C -0.053 4.053 17 C -0.142 4.142 18 C -0.075 4.075 19 C -0.003 4.003 20 F -0.145 7.145 21 C 0.220 3.780 22 N -0.859 5.859 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.023 0.977 29 H -0.001 1.001 30 H 0.267 0.733 31 H 0.137 0.863 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.402 0.598 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 -10.953 15.219 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.319 5.319 4 C 0.139 3.861 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.342 3.658 14 O -0.476 6.476 15 C -0.206 4.206 16 C -0.072 4.072 17 C -0.162 4.162 18 C -0.094 4.094 19 C -0.027 4.027 20 F -0.124 7.124 21 C 0.110 3.890 22 N -0.397 5.397 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.119 0.881 28 H 0.041 0.959 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.190 0.810 33 H 0.188 0.812 34 H 0.231 0.769 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.354 -10.252 15.034 19.274 hybrid contribution 0.404 1.079 -0.771 1.386 sum -5.950 -9.173 14.263 17.971 Atomic orbital electron populations 1.22098 0.94967 1.03394 1.01031 1.21912 0.95086 0.81608 1.04216 1.48183 1.62326 1.14993 1.06446 1.18787 0.94874 0.92160 0.80261 1.21709 0.96242 1.33579 1.06694 0.92532 1.25859 1.02994 0.94398 0.95792 1.70050 1.38267 1.35545 1.12950 0.85403 0.78874 0.78228 0.78242 1.18692 1.20834 1.19623 1.18560 0.76756 0.85908 0.84557 1.90722 1.50523 1.18211 1.88098 1.19202 1.04661 1.01340 0.95422 1.21274 0.96648 0.91286 0.97981 1.21030 1.00146 1.02420 0.92592 1.21430 0.93943 0.92678 1.01368 1.17129 0.98126 0.98900 0.88552 1.91427 1.65802 1.88280 1.66886 1.17738 0.91302 0.87753 0.92225 1.42371 1.49773 1.27011 1.20553 0.93480 0.93984 0.88604 0.90273 0.88150 0.95851 0.98240 0.92412 0.84492 0.81006 0.81218 0.76885 0.75972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 10.20 71.98 0.73 -3.52 16 2 C 0.09 3.00 5.90 86.38 0.51 3.51 16 3 N -0.59 -25.48 2.47 -830.02 -2.05 -27.53 16 4 C 0.26 14.10 5.18 85.63 0.44 14.55 16 5 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 6 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.49 5.46 84.66 0.46 0.96 16 8 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.55 24.03 6.34 86.67 0.55 24.58 16 14 O -0.59 -31.34 15.58 -4.05 -0.06 -31.40 16 15 C -0.20 -6.54 4.88 -19.99 -0.10 -6.63 16 16 C -0.05 -1.35 7.59 22.52 0.17 -1.18 16 17 C -0.14 -2.53 10.02 22.24 0.22 -2.31 16 18 C -0.08 -1.36 10.00 22.33 0.22 -1.14 16 19 C 0.00 -0.08 7.30 22.46 0.16 0.09 16 20 F -0.14 -3.49 16.64 44.97 0.75 -2.74 16 21 C 0.22 6.57 6.76 38.71 0.26 6.83 16 22 N -0.86 -25.09 8.92 -50.79 -0.45 -25.55 16 23 H 0.05 1.30 8.05 -2.39 -0.02 1.28 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.08 2.59 8.03 -2.38 -0.02 2.57 16 27 H 0.10 2.65 4.53 -2.39 -0.01 2.64 16 28 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 29 H 0.00 -0.03 7.35 -2.38 -0.02 -0.05 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.14 3.42 7.38 -2.91 -0.02 3.40 16 32 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.40 13.50 7.01 -92.71 -0.65 12.85 16 35 H 0.41 9.72 8.32 -92.71 -0.77 8.95 16 Total: -1.00 -72.80 304.03 4.09 -68.70 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.29 Total: 22.91 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 3.88 Total: 4.81 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -2.21 Total: -108.86 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.06 Total: -31.40 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.75 Total: -2.74 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.80 4.09 -68.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054210881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.755 kcal (2) G-P(sol) polarization free energy of solvation -72.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds